Non-Coding RNA Search

Ss1.1-Pig4-TMW8023L10.3

Sequence:


               
               GTTTTTAAACTATCATAACTCCATTTTGTTCCTTATGTAGGAAAACTGTAAATTAGAATT
ACTTTTTTAGAAAGCATGCATGTAATGTATGTATGCAGTATGCCTTACTTCAAAAGACAA
AAGGGTATTAATTTTAAGTCTTCTAGGAAATAGAAGAACCTAGATGTCAAAGCCAGTATT
TGTTTGGGTTATGAAACAAACAATGATCTAATCACAATAGTACCTTTTTTTGTTCAAGTG
TTGGAACATGTATAAAACAAACAGGAATGTAAGTTTATTATCAGAAGAATATGTACTCTA
TAAAAGTTATAGAAGATGAGAGCACAGTGGTATCGTTCCCACATATTTATAATACCCAAG
TACATTCTAATTATCAGTTCGTCAGAAGAATTTTTTAATAACCTGTGTTTTTCTATATTA
TTATACATAGTCATTGTAGAAAACTTGAAAAAATGCAGAAATGTATAAAACAGAAAAAAA
TACTGATGATATCACACCCCAGAAGTAACCACCATGAACAGCTTTTTCCCCCTGTATAGG
CCTATATGTATATTATATACCCTTTTATATAATTGGGATCATACAATTTTATAACTAGTT
TGCTTTTTCCATTGAAGAATTGCCGCATTTTCCTATGGCATTAAAAATGTTACAAAAACA
TAATTTTAATGACTATATAATATTCCATTTAATGGACACCACTCAGTTTAACCATTCCCG
TACTGTTGACTACTTAGGCTATGTCTCATTTTCACTATTATAAATAATGTTGTGAAAAAT
TTTATGTACATACAACTTTGTCCATATAGTTGATTATTAGGACGCATTCCCCTGAAGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTAAACTATCATAACTCCATTTTGTTCCTTATGTAGGAAAACTGTAAATTAGAATT
ACTTTTTTAGAAAGCATGCATGTAATGTATGTATGCAGTATGCCTTACTTCAAAAGACAA
AAGGGTATTAATTTTAAGTCTTCTAGGAAATAGAAGAACCTAGATGTCAAAGCCAGTATT
TGTTTGGGTTATGAAACAAACAATGATCTAATCACAATAGTACCTTTTTTTGTTCAAGTG
TTGGAACATGTATAAAACAAACAGGAATGTAAGTTTATTATCAGAAGAATATGTACTCTA
TAAAAGTTATAGAAGATGAGAGCACAGTGGTATCGTTCCCACATATTTATAATACCCAAG
TACATTCTAATTATCAGTTCGTCAGAAGAATTTTTTAATAACCTGTGTTTTTCTATATTA
TTATACATAGTCATTGTAGAAAACTTGAAAAAATGCAGAAATGTATAAAACAGAAAAAAA
TACTGATGATATCACACCCCAGAAGTAACCACCATGAACAGCTTTTTCCCCCTGTATAGG
CCTATATGTATATTATATACCCTTTTATATAATTGGGATCATACAATTTTATAACTAGTT
TGCTTTTTCCATTGAAGAATTGCCGCATTTTCCTATGGCATTAAAAATGTTACAAAAACA
TAATTTTAATGACTATATAATATTCCATTTAATGGACACCACTCAGTTTAACCATTCCCG
TACTGTTGACTACTTAGGCTATGTCTCATTTTCACTATTATAAATAATGTTGTGAAAAAT
TTTATGTACATACAACTTTGTCCATATAGTTGATTATTAGGACGCATTCCCCTGAAGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-96, - strand, RNAz p=0.940243

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-96, - strand, RNAz p=0.940243

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-840, gnl|bosTau2|chr8 (54389607-54388754)
               

               
               1-840, gnl|Hg17|chr9 (110716787-110715959)
               

               
               1-840, gnl|Mm7|chr4 (58478289-58477432)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-840, gnl|bosTau2|chr8 (54389607-54388754)
               

               
               1-840, gnl|Hg17|chr9 (110716787-110715959)
               

               
               1-840, gnl|Mm7|chr4 (58478289-58477432)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cut (0.169924)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)

	1-840, gnl\|bosTau2\|chr8 (54389607-54388754)
	1-840, gnl\|Hg17\|chr9 (110716787-110715959)
	1-840, gnl\|Mm7\|chr4 (58478289-58477432)