Ss1.1-Pig4-TMW8023L14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGAGGGCTTCCGCGTGGCCCAGGAGAGGGCCCTGAGGAGGACGGAGCAGCTGGTGGCGC GCGCCTGCTCCCTGCCGCCCGGGCCGCAGACCGTGCTCCTCTTCGACGAGCTCTCGGACG CCTTGTGCAGGGTGGCCGACTTGGCCGACTTTGTGAGAATCGCTCACCCCGAGGCGGCGT TCAGGGAGGCGGCGGAGGAGGCCTGTCGGAGCATCGGCACCGCCGTGGAGAAGTTAAACA CAAATGTGGAATTATATCAAAGTCTACAGAAGTTACTGGCTGATGAAAGGCTCGCGAACT CCCTCGATCCGGAAACCAGGCGAGTGGCCGAACTGTTCCTGTTTGATTTTGAAATCAGTG GAATCCATCTAGACAACGACAAGCGCAGGAGAGCCGTGGACCTGAACGTGAAGATCCTGG ATCTGAGCAGCACGTTTCTCATGGGGACCAACCTGCCCGTCAAGGCTGAGAAGCACCTCT TGCCGGAGCAGGTCTGGCACCACTTCGAGGTGGCTGGGGACCACGTCGTGGTCGACGGTC TGCGGGCGGAGGCGCCGGATGACTTGGTGCGAGAAGCCGCTTACAAAATTTTTCTTTATC CCAATGCTGGTCAATTGAAATGTCTAGAAGAATTGCTCAGCAACAGAGATCTCCTGGCCA AGCTGGTGGGGTACGAGAGCTTTTCCCACAGGGCTCTCCAGGGGACGATGGCCAGAAGCC CAGAGACGGTCATGCAGTTCCTTGAGAAACTCTCTGACAAACTTTCTGAAAGAACCATGA AAGATTTTGAGATGATGCGAGGGATGAAAATGAAACTAAATCCTCAAAATTCTGAGCTGA TGCCTTGGGATCCACCCTACTACAGCAGCCTGATTCGAGCAGAGAGGTCCAGCGTGGAGC CCGGCGCCTACGGCCCCTTCTTCTCGCTGGGCGCCTGCATGGACGGCCTGGACGTGCTGC TCGGCCGGCTGCTGGGGGTCTCGCTCCGTGTGCAGCAGCCTGCGCCCGGCGAGGTGTGGG CCCAGGACGTGCGCAAACTGGCTGTGGTCCATGAGTCTGAAGGGCTGCTGGGATACATCT ACTGTGATTTTTTTCAGCGAGCAGACAAACCACATCAGGACTGTCACTTCACCATCCGAG GGGGCCGCGTGAGGGAAGACGGCAGCTATCAGCTCCCCGTTGTCGTCCTGATGCTGAATC TCCCCAGCCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGAGGGCTTCCGCGTGGCCCAGGAGAGGGCCCTGAGGAGGACGGAGCAGCTGGTGGCGC GCGCCTGCTCCCTGCCGCCCGGGCCGCAGACCGTGCTCCTCTTCGACGAGCTCTCGGACG CCTTGTGCAGGGTGGCCGACTTGGCCGACTTTGTGAGAATCGCTCACCCCGAGGCGGCGT TCAGGGAGGCGGCGGAGGAGGCCTGTCGGAGCATCGGCACCGCCGTGGAGAAGTTAAACA CAAATGTGGAATTATATCAAAGTCTACAGAAGTTACTGGCTGATGAAAGGCTCGCGAACT CCCTCGATCCGGAAACCAGGCGAGTGGCCGAACTGTTCCTGTTTGATTTTGAAATCAGTG GAATCCATCTAGACAACGACAAGCGCAGGAGAGCCGTGGACCTGAACGTGAAGATCCTGG ATCTGAGCAGCACGTTTCTCATGGGGACCAACCTGCCCGTCAAGGCTGAGAAGCACCTCT TGCCGGAGCAGGTCTGGCACCACTTCGAGGTGGCTGGGGACCACGTCGTGGTCGACGGTC TGCGGGCGGAGGCGCCGGATGACTTGGTGCGAGAAGCCGCTTACAAAATTTTTCTTTATC CCAATGCTGGTCAATTGAAATGTCTAGAAGAATTGCTCAGCAACAGAGATCTCCTGGCCA AGCTGGTGGGGTACGAGAGCTTTTCCCACAGGGCTCTCCAGGGGACGATGGCCAGAAGCC CAGAGACGGTCATGCAGTTCCTTGAGAAACTCTCTGACAAACTTTCTGAAAGAACCATGA AAGATTTTGAGATGATGCGAGGGATGAAAATGAAACTAAATCCTCAAAATTCTGAGCTGA TGCCTTGGGATCCACCCTACTACAGCAGCCTGATTCGAGCAGAGAGGTCCAGCGTGGAGC CCGGCGCCTACGGCCCCTTCTTCTCGCTGGGCGCCTGCATGGACGGCCTGGACGTGCTGC TCGGCCGGCTGCTGGGGGTCTCGCTCCGTGTGCAGCAGCCTGCGCCCGGCGAGGTGTGGG CCCAGGACGTGCGCAAACTGGCTGTGGTCCATGAGTCTGAAGGGCTGCTGGGATACATCT ACTGTGATTTTTTTCAGCGAGCAGACAAACCACATCAGGACTGTCACTTCACCATCCGAG GGGGCCGCGTGAGGGAAGACGGCAGCTATCAGCTCCCCGTTGTCGTCCTGATGCTGAATC TCCCCAGCCCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 101 entry(ies) | More info |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
| 3-144, gnl|bosTau2|chr12 (19103815-19103956) | |
| 3-144, gnl|canFam2|chr25 (17743874-17744084) | |
| 3-144, gnl|canFam2|chr25 (17744072-17743899) | |
| 3-144, gnl|danRer3|chr8 (34153403-34153593) | |
| 3-144, gnl|danRer3|chr8 (34153590-34153417) | |
| 3-144, gnl|dasNov1|scaffold_101635 (39266-39094) | |
| 3-144, gnl|dasNov1|scaffold_142521 (913-1117) | |
| 3-144, gnl|fr1|chrUn (53645691-53645518) | |
| 3-144, gnl|hg17|chr13 (20773535-20773771) | |
| 3-144, gnl|Hg17|chr13 (23358612-23358472) | |
| 3-144, gnl|hg17|chr7 (111972350-111972523) | |
| 3-144, gnl|loxAfr1|scaffold_152592 (701-911) | |
| 3-144, gnl|loxAfr1|scaffold_152592 (899-726) | |
| 3-144, gnl|mm7|chr14 (55654943-55655149) | |
| 3-144, gnl|mm7|chr14 (55655143-55654970) | |
| 3-144, gnl|Mm7|chr14 (55655001-55655142) | |
| 3-144, gnl|monDom2|scaffold_15 (32774404-32774196) | |
| 3-144, gnl|monDom2|scaffold_15 (32774206-32774379) | |
| 3-144, gnl|oryCun1|scaffold_133145 (1385-1212) | |
| 3-144, gnl|oryCun1|scaffold_144352 (5510-5309) | |
| 3-144, gnl|panTro1|chr14 (19921804-19922040) | |
| 3-144, gnl|panTro1|chr6 (113988640-113988813) | |
| 3-144, gnl|rheMac2|chr17 (4233176-4232980) | |
| 3-144, gnl|rheMac2|chr3 (150123343-150123516) | |
| 3-144, gnl|rn3|chr15 (39889372-39889576) | |
| 3-144, gnl|rn3|chr15 (39889572-39889399) | |
| 3-144, gnl|tetNig1|chrUn_random (13513841-13514019) | |
| 3-144, gnl|tetNig1|chrUn_random (13514015-13513842) | |
| 382-571, gnl|bosTau2|chr12 (19117397-19117586) | |
| 382-571, gnl|canFam2|chr25 (17763858-17763677) | |
| 382-571, gnl|canFam2|chr25 (17763864-17763715) | |
| 382-571, gnl|danRer3|chr8 (34162939-34162793) | |
| 382-571, gnl|dasNov1|scaffold_101635 (39679-39496) | |
| 382-571, gnl|dasNov1|scaffold_101635 (39685-39536) | |
| 382-571, gnl|echTel1|scaffold_299890 (55778-55924) | |
| 382-571, gnl|fr1|chrUn (53646808-53646662) | |
| 382-571, gnl|hg17|chr1 (235267717-235267874) | |
| 382-571, gnl|Hg17|chr13 (23342336-23342147) | |
| 382-571, gnl|hg17|chr7 (111972027-111972175) | |
| 382-571, gnl|loxAfr1|scaffold_7772 (2269-2086) | |
| 382-571, gnl|loxAfr1|scaffold_7772 (2272-2126) | |
| 382-571, gnl|mm7|chr14 (55669976-55669793) | |
| 382-571, gnl|mm7|chr14 (55669982-55669833) | |
| 382-571, gnl|Mm7|chr14 (55669792-55669981) | |
| 382-571, gnl|panTro1|chr1 (219234868-219235025) | |
| 382-571, gnl|panTro1|chr6 (113988317-113988465) | |
| 382-571, gnl|rheMac2|chr3 (150123004-150123186) | |
| 382-571, gnl|rheMac2|chr3 (150122998-150123146) | |
| 382-571, gnl|rn3|chr15 (39906330-39906147) | |
| 382-571, gnl|rn3|chr15 (39906336-39906187) | |
| 382-571, gnl|xenTro1|scaffold_417 (770065-770246) | |
| 382-571, gnl|xenTro1|scaffold_417 (770062-770208) | |
| 885-1041, gnl|bosTau2|chr12 (19130333-19130489) | |
| 885-1041, gnl|canFam2|chr25 (17806018-17805864) | |
| 885-1041, gnl|canFam2|chr25 (17806030-17805833) | |
| 885-1041, gnl|canFam2|chr25 (17806018-17805867) | |
| 885-1041, gnl|danRer3|chr8 (34170508-34170330) | |
| 885-1041, gnl|danRer3|chr8 (34170493-34170337) | |
| 885-1041, gnl|dasNov1|scaffold_101635 (40155-40002) | |
| 885-1041, gnl|dasNov1|scaffold_101635 (40155-39999) | |
| 885-1041, gnl|dasNov1|scaffold_42471 (9725-9526) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3610-3764) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3597-3794) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3610-3766) | |
| 885-1041, gnl|fr1|chrUn (53648975-53648747) | |
| 885-1041, gnl|fr1|chrUn (53648905-53648738) | |
| 885-1041, gnl|fr1|chrUn (53648901-53648745) | |
| 885-1041, gnl|galGal2|chr1 (169427187-169427034) | |
| 885-1041, gnl|galGal2|chr1 (169427191-169427003) | |
| 885-1041, gnl|galGal2|chr1 (169427187-169427031) | |
| 885-1041, gnl|hg17|chr1 (235267252-235267407) | |
| 885-1041, gnl|hg17|chr13 (23313459-23313659) | |
| 885-1041, gnl|Hg17|chr13 (23313629-23313473) | |
| 885-1041, gnl|hg17|chr7 (111970048-111970204) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47475-47321) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47486-47290) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47475-47319) | |
| 885-1041, gnl|mm7|chr14 (55695143-55694942) | |
| 885-1041, gnl|mm7|chr14 (55695125-55694971) | |
| 885-1041, gnl|Mm7|chr14 (55694970-55695126) | |
| 885-1041, gnl|mm7|chr14_random (3289681-3289835) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711125-32711279) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711111-32711309) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711125-32711281) | |
| 885-1041, gnl|oryCun1|scaffold_152862 (1072-1217) | |
| 885-1041, gnl|oryCun1|scaffold_152862 (1072-1222) | |
| 885-1041, gnl|oryCun1|scaffold_205964 (277457-277665) | |
| 885-1041, gnl|panTro1|chr1 (219234403-219234558) | |
| 885-1041, gnl|panTro1|chr14 (22506107-22506307) | |
| 885-1041, gnl|panTro1|chr6 (113986342-113986500) | |
| 885-1041, gnl|rheMac2|chr17 (4190445-4190642) | |
| 885-1041, gnl|rheMac2|chr3 (150122530-150122682) | |
| 885-1041, gnl|rheMac2|chr3 (150122530-150122685) | |
| 885-1041, gnl|rn3|chr15 (39935666-39935512) | |
| 885-1041, gnl|rn3|chr15 (39935682-39935481) | |
| 885-1041, gnl|rn3|chr15 (39935664-39935510) | |
| 885-1041, gnl|tetNig1|chrUn_random (13515883-13515720) | |
| 885-1041, gnl|tetNig1|chrUn_random (13515879-13515723) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763959-764113) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763944-764144) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763959-764110) |
| Aligned organism(s): 101 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-144, gnl|bosTau2|chr12 (19103815-19103956) | |
| 3-144, gnl|canFam2|chr25 (17743874-17744084) | |
| 3-144, gnl|canFam2|chr25 (17744072-17743899) | |
| 3-144, gnl|danRer3|chr8 (34153403-34153593) | |
| 3-144, gnl|danRer3|chr8 (34153590-34153417) | |
| 3-144, gnl|dasNov1|scaffold_101635 (39266-39094) | |
| 3-144, gnl|dasNov1|scaffold_142521 (913-1117) | |
| 3-144, gnl|fr1|chrUn (53645691-53645518) | |
| 3-144, gnl|hg17|chr13 (20773535-20773771) | |
| 3-144, gnl|Hg17|chr13 (23358612-23358472) | |
| 3-144, gnl|hg17|chr7 (111972350-111972523) | |
| 3-144, gnl|loxAfr1|scaffold_152592 (701-911) | |
| 3-144, gnl|loxAfr1|scaffold_152592 (899-726) | |
| 3-144, gnl|mm7|chr14 (55654943-55655149) | |
| 3-144, gnl|mm7|chr14 (55655143-55654970) | |
| 3-144, gnl|Mm7|chr14 (55655001-55655142) | |
| 3-144, gnl|monDom2|scaffold_15 (32774404-32774196) | |
| 3-144, gnl|monDom2|scaffold_15 (32774206-32774379) | |
| 3-144, gnl|oryCun1|scaffold_133145 (1385-1212) | |
| 3-144, gnl|oryCun1|scaffold_144352 (5510-5309) | |
| 3-144, gnl|panTro1|chr14 (19921804-19922040) | |
| 3-144, gnl|panTro1|chr6 (113988640-113988813) | |
| 3-144, gnl|rheMac2|chr17 (4233176-4232980) | |
| 3-144, gnl|rheMac2|chr3 (150123343-150123516) | |
| 3-144, gnl|rn3|chr15 (39889372-39889576) | |
| 3-144, gnl|rn3|chr15 (39889572-39889399) | |
| 3-144, gnl|tetNig1|chrUn_random (13513841-13514019) | |
| 3-144, gnl|tetNig1|chrUn_random (13514015-13513842) | |
| 382-571, gnl|bosTau2|chr12 (19117397-19117586) | |
| 382-571, gnl|canFam2|chr25 (17763858-17763677) | |
| 382-571, gnl|canFam2|chr25 (17763864-17763715) | |
| 382-571, gnl|danRer3|chr8 (34162939-34162793) | |
| 382-571, gnl|dasNov1|scaffold_101635 (39679-39496) | |
| 382-571, gnl|dasNov1|scaffold_101635 (39685-39536) | |
| 382-571, gnl|echTel1|scaffold_299890 (55778-55924) | |
| 382-571, gnl|fr1|chrUn (53646808-53646662) | |
| 382-571, gnl|hg17|chr1 (235267717-235267874) | |
| 382-571, gnl|Hg17|chr13 (23342336-23342147) | |
| 382-571, gnl|hg17|chr7 (111972027-111972175) | |
| 382-571, gnl|loxAfr1|scaffold_7772 (2269-2086) | |
| 382-571, gnl|loxAfr1|scaffold_7772 (2272-2126) | |
| 382-571, gnl|mm7|chr14 (55669976-55669793) | |
| 382-571, gnl|mm7|chr14 (55669982-55669833) | |
| 382-571, gnl|Mm7|chr14 (55669792-55669981) | |
| 382-571, gnl|panTro1|chr1 (219234868-219235025) | |
| 382-571, gnl|panTro1|chr6 (113988317-113988465) | |
| 382-571, gnl|rheMac2|chr3 (150123004-150123186) | |
| 382-571, gnl|rheMac2|chr3 (150122998-150123146) | |
| 382-571, gnl|rn3|chr15 (39906330-39906147) | |
| 382-571, gnl|rn3|chr15 (39906336-39906187) | |
| 382-571, gnl|xenTro1|scaffold_417 (770065-770246) | |
| 382-571, gnl|xenTro1|scaffold_417 (770062-770208) | |
| 885-1041, gnl|bosTau2|chr12 (19130333-19130489) | |
| 885-1041, gnl|canFam2|chr25 (17806018-17805864) | |
| 885-1041, gnl|canFam2|chr25 (17806030-17805833) | |
| 885-1041, gnl|canFam2|chr25 (17806018-17805867) | |
| 885-1041, gnl|danRer3|chr8 (34170508-34170330) | |
| 885-1041, gnl|danRer3|chr8 (34170493-34170337) | |
| 885-1041, gnl|dasNov1|scaffold_101635 (40155-40002) | |
| 885-1041, gnl|dasNov1|scaffold_101635 (40155-39999) | |
| 885-1041, gnl|dasNov1|scaffold_42471 (9725-9526) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3610-3764) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3597-3794) | |
| 885-1041, gnl|echTel1|scaffold_280617 (3610-3766) | |
| 885-1041, gnl|fr1|chrUn (53648975-53648747) | |
| 885-1041, gnl|fr1|chrUn (53648905-53648738) | |
| 885-1041, gnl|fr1|chrUn (53648901-53648745) | |
| 885-1041, gnl|galGal2|chr1 (169427187-169427034) | |
| 885-1041, gnl|galGal2|chr1 (169427191-169427003) | |
| 885-1041, gnl|galGal2|chr1 (169427187-169427031) | |
| 885-1041, gnl|hg17|chr1 (235267252-235267407) | |
| 885-1041, gnl|hg17|chr13 (23313459-23313659) | |
| 885-1041, gnl|Hg17|chr13 (23313629-23313473) | |
| 885-1041, gnl|hg17|chr7 (111970048-111970204) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47475-47321) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47486-47290) | |
| 885-1041, gnl|loxAfr1|scaffold_7772 (47475-47319) | |
| 885-1041, gnl|mm7|chr14 (55695143-55694942) | |
| 885-1041, gnl|mm7|chr14 (55695125-55694971) | |
| 885-1041, gnl|Mm7|chr14 (55694970-55695126) | |
| 885-1041, gnl|mm7|chr14_random (3289681-3289835) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711125-32711279) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711111-32711309) | |
| 885-1041, gnl|monDom2|scaffold_15 (32711125-32711281) | |
| 885-1041, gnl|oryCun1|scaffold_152862 (1072-1217) | |
| 885-1041, gnl|oryCun1|scaffold_152862 (1072-1222) | |
| 885-1041, gnl|oryCun1|scaffold_205964 (277457-277665) | |
| 885-1041, gnl|panTro1|chr1 (219234403-219234558) | |
| 885-1041, gnl|panTro1|chr14 (22506107-22506307) | |
| 885-1041, gnl|panTro1|chr6 (113986342-113986500) | |
| 885-1041, gnl|rheMac2|chr17 (4190445-4190642) | |
| 885-1041, gnl|rheMac2|chr3 (150122530-150122682) | |
| 885-1041, gnl|rheMac2|chr3 (150122530-150122685) | |
| 885-1041, gnl|rn3|chr15 (39935666-39935512) | |
| 885-1041, gnl|rn3|chr15 (39935682-39935481) | |
| 885-1041, gnl|rn3|chr15 (39935664-39935510) | |
| 885-1041, gnl|tetNig1|chrUn_random (13515883-13515720) | |
| 885-1041, gnl|tetNig1|chrUn_random (13515879-13515723) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763959-764113) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763944-764144) | |
| 885-1041, gnl|xenTro1|scaffold_417 (763959-764110) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.142308) | |
| ese (0.126502) |