Non-Coding RNA Search

Ss1.1-Pig4-TMW8023L17.5

Sequence:


               
               CACTTTATGGCTAGTTGTCTAGGGAGAGTGACCCGGAGCACCATTCCAGCTGCCCTGCCG
GGCACACGCCATCCTCCTCAGCTCACAAAGGCCTTGATCTCCGGCTTCCTCCAGCCTGTG
GCCCAGCCACCCCCGCTCTCTCCTCCCCTAATGGTTCCCCTATAGACGGCTCCCCTCCTA
GCTCTCTGCCACCCCCTGCACACACTCAGCAGCAGACTTTTGTAAAGGTTTTCTCTGGGC
AGCAGCGGCAGCTTGCCAACAAGACAGTTGGTTTTAAACTTTGATCCGAATAGCCTTTTG
ATACTTGAATATTTTTAAGTTTTATACATAGTTTCTAATTTTCTTCCTAACAGATTCAGA
TACCTAATAAGATGTTAGAATGTACTCTGTGGACAATCGGAGTCCCAGTGGTATCCTGTC
TTCCTCCTAGCGCCAGCTCAGTTTCCACCAGGAGACTGCTTCTGAAACCTCTGCAGCATC
TGGGGTTTGGGGGGTTGGGGACAGGGGCTAGCTACTCCACAGGCCAGGCCGAGGGTGGGG
CTCCCATCCCAGAGCAGGTGGAGATACAGACCCGCCCACTGCCTGCCTGGCCACACTCAA
CGCTCCTGGTAACCCTTCTGACCGGCTGACCTAGGGGAAGAGGAACTGGGGGGGCCGCAA
AGTAGTTTGAAGAAACAAGTCTGTGAAGAATTGCATCACTTTTTTCAAAAAAGGGTCGCG
GGCGAGGAGAAAAGAAACAAAGGCCAAGTTTCCATGCTGGACTTGCAGGAAGAGAGGATG
CAGCTGAACCGGAGGAGAGAAGCAGTGGCATGACTCAGGAAAAGGCATTTGCTTTCACAT
GATTACACCCGGTAGCAGGAGGCACTGTCCCATGACCCCTCCCATGTCCCTGGCACCCAG
TGAGGCAGTGGGCAGCTCCTGCCCAACCTCACAGCACACGGGGGCCACGTGCCCCCACTC
TCCCCTTGGCCTGTAGACCTGCCAAGGCAGGGGACCAAAAAAGAAGTCACTTGAAGGTCT
TAAGTCTGCATACTGTATTTATTTAGTTGTACTTTTTACTCGCAAGACCCACCATTTTGA
GGCAGCACTGCCCTTCTGGGGGAGGAGGGCAGGGAGCAGGGTCCTCTGTCCTCTGCACAT
TTCCGGACTCAGTGGGTTTCCCAGGCCACCAGATCCCGGCCTCTTCTGGCCTGGCTTCCA
TGTTCCCGTCCAGCCCTGCAAGGGGAGCACCCTTCGCTTAGAAAAGCCAGACCCAGCCCT
TGTTTCTGTTTCCCTGGAGTCCCATGATTTGCGTCTGTCGCACTGAAACTGGAAAGCAAT
CTCTCAGTGTCTGTGCCAACTTTCATTCCCTCCCCCACCTCCTTCCCCTTTCTGCTTTTT
ATTTATGTAGGATGTGTGCTGTTTAATGGTGGAATGTCAAAGCGCTCCTTTGCTGGGCCA
CAGTGGCGGCAGTCACTTTGGGTCCTCACGTGCCCCGTCCTCCCCCTGACACTCAGGCCT
GAGGGTTGGCAAAGCCAATGGGCAGGTGACAGCCTAGGGCCCACATGTGACCTTCTTTGA
GGCTCGGCTGCCGGACTCTGCGACGAGAAGAGACACCTCGCCGCCCCGGGGCCCTGGGTC
TGGAGCAGCAAGCTCAGGGGGCAGCCGGACCCCACGCTGGTGGGTGGTGGTCTCTTGGCA
GCTGCAAGTCCAAGTTTGAACTCGGCCGTCTCTGTACCACTGTGGGGAAAAGGACTGCTG
ACACTTTCATTAAAGTTCCCTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTATGGCTAGTTGTCTAGGGAGAGTGACCCGGAGCACCATTCCAGCTGCCCTGCCG
GGCACACGCCATCCTCCTCAGCTCACAAAGGCCTTGATCTCCGGCTTCCTCCAGCCTGTG
GCCCAGCCACCCCCGCTCTCTCCTCCCCTAATGGTTCCCCTATAGACGGCTCCCCTCCTA
GCTCTCTGCCACCCCCTGCACACACTCAGCAGCAGACTTTTGTAAAGGTTTTCTCTGGGC
AGCAGCGGCAGCTTGCCAACAAGACAGTTGGTTTTAAACTTTGATCCGAATAGCCTTTTG
ATACTTGAATATTTTTAAGTTTTATACATAGTTTCTAATTTTCTTCCTAACAGATTCAGA
TACCTAATAAGATGTTAGAATGTACTCTGTGGACAATCGGAGTCCCAGTGGTATCCTGTC
TTCCTCCTAGCGCCAGCTCAGTTTCCACCAGGAGACTGCTTCTGAAACCTCTGCAGCATC
TGGGGTTTGGGGGGTTGGGGACAGGGGCTAGCTACTCCACAGGCCAGGCCGAGGGTGGGG
CTCCCATCCCAGAGCAGGTGGAGATACAGACCCGCCCACTGCCTGCCTGGCCACACTCAA
CGCTCCTGGTAACCCTTCTGACCGGCTGACCTAGGGGAAGAGGAACTGGGGGGGCCGCAA
AGTAGTTTGAAGAAACAAGTCTGTGAAGAATTGCATCACTTTTTTCAAAAAAGGGTCGCG
GGCGAGGAGAAAAGAAACAAAGGCCAAGTTTCCATGCTGGACTTGCAGGAAGAGAGGATG
CAGCTGAACCGGAGGAGAGAAGCAGTGGCATGACTCAGGAAAAGGCATTTGCTTTCACAT
GATTACACCCGGTAGCAGGAGGCACTGTCCCATGACCCCTCCCATGTCCCTGGCACCCAG
TGAGGCAGTGGGCAGCTCCTGCCCAACCTCACAGCACACGGGGGCCACGTGCCCCCACTC
TCCCCTTGGCCTGTAGACCTGCCAAGGCAGGGGACCAAAAAAGAAGTCACTTGAAGGTCT
TAAGTCTGCATACTGTATTTATTTAGTTGTACTTTTTACTCGCAAGACCCACCATTTTGA
GGCAGCACTGCCCTTCTGGGGGAGGAGGGCAGGGAGCAGGGTCCTCTGTCCTCTGCACAT
TTCCGGACTCAGTGGGTTTCCCAGGCCACCAGATCCCGGCCTCTTCTGGCCTGGCTTCCA
TGTTCCCGTCCAGCCCTGCAAGGGGAGCACCCTTCGCTTAGAAAAGCCAGACCCAGCCCT
TGTTTCTGTTTCCCTGGAGTCCCATGATTTGCGTCTGTCGCACTGAAACTGGAAAGCAAT
CTCTCAGTGTCTGTGCCAACTTTCATTCCCTCCCCCACCTCCTTCCCCTTTCTGCTTTTT
ATTTATGTAGGATGTGTGCTGTTTAATGGTGGAATGTCAAAGCGCTCCTTTGCTGGGCCA
CAGTGGCGGCAGTCACTTTGGGTCCTCACGTGCCCCGTCCTCCCCCTGACACTCAGGCCT
GAGGGTTGGCAAAGCCAATGGGCAGGTGACAGCCTAGGGCCCACATGTGACCTTCTTTGA
GGCTCGGCTGCCGGACTCTGCGACGAGAAGAGACACCTCGCCGCCCCGGGGCCCTGGGTC
TGGAGCAGCAAGCTCAGGGGGCAGCCGGACCCCACGCTGGTGGGTGGTGGTCTCTTGGCA
GCTGCAAGTCCAAGTTTGAACTCGGCCGTCTCTGTACCACTGTGGGGAAAAGGACTGCTG
ACACTTTCATTAAAGTTCCCTGAG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               101-1416, gnl|bosTau2|chr17 (45029419-45028110)
               

               
               101-1416, gnl|Hg17|chr22 (21983056-21984381)
               

               
               101-1416, gnl|Mm7|chr10 (74838824-74840154)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               101-1416, gnl|bosTau2|chr17 (45029419-45028110)
               

               
               101-1416, gnl|Hg17|chr22 (21983056-21984381)
               

               
               101-1416, gnl|Mm7|chr10 (74838824-74840154)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               cov (0.528611)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.528611)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	101-1416, gnl\|bosTau2\|chr17 (45029419-45028110)
	101-1416, gnl\|Hg17\|chr22 (21983056-21984381)
	101-1416, gnl\|Mm7\|chr10 (74838824-74840154)

	cov (0.528611)
	fcc (0.197785)
	col (0.195008)
	fbs (0.175346)
	nje (0.16592)
	pla (0.133672)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)