Ss1.1-Pig4-TMW8023M09.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATGGCGGAGGCTACGCGAAGAGTGGCGCGGTGTGACTGAGCTACCTTGTCTGCCTGTGT CCTAGAGGCGTCGGGGGCTGTGAAATCGCGGTGACCCTGCAGGCGGTGGCCAAGCCGAGA GGCAGGCAGGGTAGAAGCAGGGACGCTGGGCCAGGCTAGCCCTCGGTACAGGTGCAATGA AAGCCCTCCACGCTTTCTGTGTTGTCCTTTTGATATTTGGGAGTTTCTCTGAAGCAAAGT TTGATGATTTCGAGGATGAGGAAGACATAGTAGAGTATGATGATAACGACTTTGCTGAAT TCGAGGACGTCCCAGAAGATTCTGTCACTGAATCTCCTCAGCGGGTGATAACCACTGAGG ATGATGAAGATGAGACGACTGTGGAGTTGGAAGGGCAGGATGAAAACCAGGAAGGGGATT TTGAGGATGCAGATACCCAGGAGGGAGATACCGAGAGTGAACCATACGATGATGAAGAAT TTGAAGGTTATGAAGACAAACCAGATACTTCTTCTAGCAAAAGTAAAGACCCAATAACAA TTGTCGATGTTCCCGCACACCTCCAGAACAGCTGGGAGAGTTACTATCTAGAAATTTTGA TGGTGACTGGCCTGCTTGCCTACATCATGAATTATATCATCGGGAAGAATAAAAACAGTC GCCTTGCTCAGGCCTGGTTTAACACTCACAGGGAGCTTCTGGAGAGCAACTTTACCTTAG TAGGGGATGATGGAACTAACAAAGAAGCCACGAGCACAGGAAAGCTGAACCAGGAGAATG AGCACATTTACAACCTGTGGTGTTCTGGTCGAGTGTGCTGTGAGGGGATGCTTATCCAGC TGAGGTTTCTCAAGAGACAAGACTTACTGAATGTCCTGGCCCGGATGATGAGACCAGTGA GTGATCAAGTGCAAATAAAAGTAACCATGAATGATGAAGACATGGATACCTATGTGTTTG CTGTTGGTACTCGGAAAGCGTTGGTGCGACTGCAGAAGGAGATGCAGGATCTGAGTGAGT TTTGCAGTGACAAACCTAAGTCTGGAGCCAAGTACGGACTGCCTGACTCCTTGGCTATCC TGTCAGAGATGGGAGAAGTCACAGAGGGCATGATGGATACAAAGATGGTTCACTTTCTTA CACACTATGCTGACAAGATTGAATCTGTTCATTTTTCAGACCAGTTCTCTGGTCCAAAAA TTATGCAAGAGGAAGGTCAGCCTTTAAAGCTACCTGACACTAAGAGGACACTATTGTTTA CATTTAATGTGCCTGGCTCAGGTAACACTTACCCAAAGGATATGGAGGCTTTACTACCCC TGATGAACATGGTGATTTATTCTATTGATAAAGCCAAAAAGTTCCGACTCAACAGAGAAG GCAAGCAAAAAGCAGACAAGAACCGGGCTCGAGTAGAGGAGAATTTCTTGAAGCTGACGC ATGTGCAGAGACAGGAAGCTGCGCAGTCTCGACGTGAAGAGAAGAAAAGGGCAGAGAAGG AACGAATCATGAATGAGGAAGATCCTGAGAAACAGCGCAGGCTGGAGGAAGCTGCCTTGA GACGTGAGCAAAAGAAATTAGAGAAGAAGCAAATGAAAATGAAGCAAATCAAAGTGAAAG CCATGTGAAGTTATCCCAGAGATCTGAGTCCTGATACCACCTGTAAGCTCTGAATTCACA GAAAACAAAAAATACCAGTTCATTTCTCATCTTAAAATTTCCCAGTGACTGAGGAATCTG TATTGCATCATCCGTTCTGTTTTTGGTTTGGAGTTTTACAAAGGTTATAGATATATTGAA AGATTGTTTCAGTCATTTTCTTCCAGATAATCAAATCGTTTTGATTATTTTATAAAACAA ATGATATATATTAAATCTGTGTAGTTTTAAAACATTTTAAAAAATTATAACATGAATTAT CAGTACTTTTAGTGCTTTGATGTTTGAAGAAATATCATGAAATTTATAGGTATATAAATA GATTGTTGCTTTTTGTTTAAACTAGGCAGCTGAAATGGCTGTGAAGATTGACTCTAAACC AAGATTCCACAAATAACTATTGGAATTGCACAATAAACATTGTTTTGTGTTTTCTTTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATGGCGGAGGCTACGCGAAGAGTGGCGCGGTGTGACTGAGCTACCTTGTCTGCCTGTGT CCTAGAGGCGTCGGGGGCTGTGAAATCGCGGTGACCCTGCAGGCGGTGGCCAAGCCGAGA GGCAGGCAGGGTAGAAGCAGGGACGCTGGGCCAGGCTAGCCCTCGGTACAGGTGCAATGA AAGCCCTCCACGCTTTCTGTGTTGTCCTTTTGATATTTGGGAGTTTCTCTGAAGCAAAGT TTGATGATTTCGAGGATGAGGAAGACATAGTAGAGTATGATGATAACGACTTTGCTGAAT TCGAGGACGTCCCAGAAGATTCTGTCACTGAATCTCCTCAGCGGGTGATAACCACTGAGG ATGATGAAGATGAGACGACTGTGGAGTTGGAAGGGCAGGATGAAAACCAGGAAGGGGATT TTGAGGATGCAGATACCCAGGAGGGAGATACCGAGAGTGAACCATACGATGATGAAGAAT TTGAAGGTTATGAAGACAAACCAGATACTTCTTCTAGCAAAAGTAAAGACCCAATAACAA TTGTCGATGTTCCCGCACACCTCCAGAACAGCTGGGAGAGTTACTATCTAGAAATTTTGA TGGTGACTGGCCTGCTTGCCTACATCATGAATTATATCATCGGGAAGAATAAAAACAGTC GCCTTGCTCAGGCCTGGTTTAACACTCACAGGGAGCTTCTGGAGAGCAACTTTACCTTAG TAGGGGATGATGGAACTAACAAAGAAGCCACGAGCACAGGAAAGCTGAACCAGGAGAATG AGCACATTTACAACCTGTGGTGTTCTGGTCGAGTGTGCTGTGAGGGGATGCTTATCCAGC TGAGGTTTCTCAAGAGACAAGACTTACTGAATGTCCTGGCCCGGATGATGAGACCAGTGA GTGATCAAGTGCAAATAAAAGTAACCATGAATGATGAAGACATGGATACCTATGTGTTTG CTGTTGGTACTCGGAAAGCGTTGGTGCGACTGCAGAAGGAGATGCAGGATCTGAGTGAGT TTTGCAGTGACAAACCTAAGTCTGGAGCCAAGTACGGACTGCCTGACTCCTTGGCTATCC TGTCAGAGATGGGAGAAGTCACAGAGGGCATGATGGATACAAAGATGGTTCACTTTCTTA CACACTATGCTGACAAGATTGAATCTGTTCATTTTTCAGACCAGTTCTCTGGTCCAAAAA TTATGCAAGAGGAAGGTCAGCCTTTAAAGCTACCTGACACTAAGAGGACACTATTGTTTA CATTTAATGTGCCTGGCTCAGGTAACACTTACCCAAAGGATATGGAGGCTTTACTACCCC TGATGAACATGGTGATTTATTCTATTGATAAAGCCAAAAAGTTCCGACTCAACAGAGAAG GCAAGCAAAAAGCAGACAAGAACCGGGCTCGAGTAGAGGAGAATTTCTTGAAGCTGACGC ATGTGCAGAGACAGGAAGCTGCGCAGTCTCGACGTGAAGAGAAGAAAAGGGCAGAGAAGG AACGAATCATGAATGAGGAAGATCCTGAGAAACAGCGCAGGCTGGAGGAAGCTGCCTTGA GACGTGAGCAAAAGAAATTAGAGAAGAAGCAAATGAAAATGAAGCAAATCAAAGTGAAAG CCATGTGAAGTTATCCCAGAGATCTGAGTCCTGATACCACCTGTAAGCTCTGAATTCACA GAAAACAAAAAATACCAGTTCATTTCTCATCTTAAAATTTCCCAGTGACTGAGGAATCTG TATTGCATCATCCGTTCTGTTTTTGGTTTGGAGTTTTACAAAGGTTATAGATATATTGAA AGATTGTTTCAGTCATTTTCTTCCAGATAATCAAATCGTTTTGATTATTTTATAAAACAA ATGATATATATTAAATCTGTGTAGTTTTAAAACATTTTAAAAAATTATAACATGAATTAT CAGTACTTTTAGTGCTTTGATGTTTGAAGAAATATCATGAAATTTATAGGTATATAAATA GATTGTTGCTTTTTGTTTAAACTAGGCAGCTGAAATGGCTGTGAAGATTGACTCTAAACC AAGATTCCACAAATAACTATTGGAATTGCACAATAAACATTGTTTTGTGTTTTCTTTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 324-1124, - strand, RNAz p=0.794804 | |
| 1013-1105, - strand, RNAz p=0.779406 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 324-1124, - strand, RNAz p=0.794804 | |
| 1013-1105, - strand, RNAz p=0.779406 |
| Aligned organism(s): 72 entry(ies) | More info |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
| 3-154, gnl|bosTau2|chr19 (40456786-40456635) | |
| 3-154, gnl|canFam2|chr9 (14862501-14862980) | |
| 3-154, gnl|dasNov1|scaffold_28226 (2380-2830) | |
| 3-154, gnl|echTel1|scaffold_313474 (105972-105494) | |
| 3-154, gnl|hg17|chr17 (59204433-59204911) | |
| 3-154, gnl|Hg17|chr17 (59204681-59204531) | |
| 3-154, gnl|loxAfr1|scaffold_105004 (7216-6709) | |
| 3-154, gnl|mm7|chr11 (106325120-106325584) | |
| 3-154, gnl|Mm7|chr11 (106325366-106325217) | |
| 3-154, gnl|monDom2|scaffold_18 (35732119-35731621) | |
| 3-154, gnl|oryCun1|scaffold_202889 (133127-133582) | |
| 3-154, gnl|panTro1|chr19 (45931764-45931286) | |
| 3-154, gnl|rheMac2|chr16 (59284224-59284716) | |
| 3-154, gnl|rn3|chr10 (95626195-95626651) | |
| 169-441, gnl|bosTau2|chr19 (40449392-40449120) | |
| 169-441, gnl|Hg17|chr17 (59197274-59197003) | |
| 169-441, gnl|Mm7|chr11 (106322393-106322121) | |
| 549-724, gnl|bosTau2|chr19 (40448081-40447906) | |
| 549-724, gnl|canFam2|chr9 (14853812-14854010) | |
| 549-724, gnl|dasNov1|scaffold_35576 (3181-3379) | |
| 549-724, gnl|echTel1|scaffold_313474 (114427-114229) | |
| 549-724, gnl|fr1|chrUn (140114308-140114118) | |
| 549-724, gnl|galGal2|chr27 (1257047-1257242) | |
| 549-724, gnl|hg17|chr17 (59195102-59195300) | |
| 549-724, gnl|Hg17|chr17 (59195282-59195107) | |
| 549-724, gnl|loxAfr1|scaffold_47806 (9079-9277) | |
| 549-724, gnl|mm7|chr11 (106319323-106319520) | |
| 549-724, gnl|Mm7|chr11 (106319503-106319328) | |
| 549-724, gnl|monDom2|scaffold_18 (35747016-35746817) | |
| 549-724, gnl|oryCun1|scaffold_202889 (125828-126023) | |
| 549-724, gnl|panTro1|chr19 (45941083-45940885) | |
| 549-724, gnl|rheMac2|chr16 (59276578-59276776) | |
| 549-724, gnl|rn3|chr10 (95620544-95620741) | |
| 549-724, gnl|tetNig1|chr3 (13702034-13701832) | |
| 549-724, gnl|xenTro1|scaffold_221 (1570558-1570762) | |
| 1013-1124, gnl|bosTau2|chr19 (40443565-40443454) | |
| 1013-1124, gnl|canFam2|chr9 (14848009-14848173) | |
| 1013-1124, gnl|echTel1|scaffold_313474 (117942-117775) | |
| 1013-1124, gnl|fr1|chrUn (140115138-140114994) | |
| 1013-1124, gnl|galGal2|chr27 (1254260-1254421) | |
| 1013-1124, gnl|hg17|chr17 (59187315-59187482) | |
| 1013-1124, gnl|Hg17|chr17 (59187443-59187332) | |
| 1013-1124, gnl|loxAfr1|scaffold_47806 (4057-4224) | |
| 1013-1124, gnl|mm7|chr11 (106313945-106314110) | |
| 1013-1124, gnl|Mm7|chr11 (106314073-106313962) | |
| 1013-1124, gnl|monDom2|scaffold_18 (35752480-35752339) | |
| 1013-1124, gnl|panTro1|chr19 (45948849-45948682) | |
| 1013-1124, gnl|rheMac2|chr16 (59269185-59269352) | |
| 1013-1124, gnl|rn3|chr10 (95614649-95614814) | |
| 1013-1124, gnl|tetNig1|chr3 (13702801-13702667) | |
| 1013-1124, gnl|xenTro1|scaffold_221 (1569123-1569275) | |
| 1253-1380, gnl|bosTau2|chr19 (40441142-40441015) | |
| 1253-1380, gnl|canFam2|chr9 (14845425-14845553) | |
| 1253-1380, gnl|dasNov1|scaffold_259631 (231-359) | |
| 1253-1380, gnl|echTel1|scaffold_313474 (123523-123395) | |
| 1253-1380, gnl|fr1|chrUn (140115617-140115496) | |
| 1253-1380, gnl|galGal2|chr27 (1252176-1252304) | |
| 1253-1380, gnl|hg17|chr17 (59183408-59183536) | |
| 1253-1380, gnl|Hg17|chr17 (59183539-59183411) | |
| 1253-1380, gnl|loxAfr1|scaffold_47806 (810-937) | |
| 1253-1380, gnl|mm7|chr11 (106311421-106311549) | |
| 1253-1380, gnl|Mm7|chr11 (106311551-106311424) | |
| 1253-1380, gnl|monDom2|scaffold_18 (35756272-35756144) | |
| 1253-1380, gnl|oryCun1|scaffold_202889 (114750-114878) | |
| 1253-1380, gnl|panTro1|chr19 (45952759-45952631) | |
| 1253-1380, gnl|rheMac2|chr16 (59265269-59265397) | |
| 1253-1380, gnl|rn3|chr10 (95612237-95612365) | |
| 1253-1380, gnl|tetNig1|chr3 (13703302-13703174) | |
| 1253-1380, gnl|xenTro1|scaffold_221 (1566716-1566838) | |
| 1546-2100, gnl|bosTau2|chr19 (40437676-40437122) | |
| 1546-2100, gnl|Hg17|chr17 (59178055-59177488) | |
| 1546-2100, gnl|Mm7|chr11 (106310059-106309532) |
| Aligned organism(s): 72 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-154, gnl|bosTau2|chr19 (40456786-40456635) | |
| 3-154, gnl|canFam2|chr9 (14862501-14862980) | |
| 3-154, gnl|dasNov1|scaffold_28226 (2380-2830) | |
| 3-154, gnl|echTel1|scaffold_313474 (105972-105494) | |
| 3-154, gnl|hg17|chr17 (59204433-59204911) | |
| 3-154, gnl|Hg17|chr17 (59204681-59204531) | |
| 3-154, gnl|loxAfr1|scaffold_105004 (7216-6709) | |
| 3-154, gnl|mm7|chr11 (106325120-106325584) | |
| 3-154, gnl|Mm7|chr11 (106325366-106325217) | |
| 3-154, gnl|monDom2|scaffold_18 (35732119-35731621) | |
| 3-154, gnl|oryCun1|scaffold_202889 (133127-133582) | |
| 3-154, gnl|panTro1|chr19 (45931764-45931286) | |
| 3-154, gnl|rheMac2|chr16 (59284224-59284716) | |
| 3-154, gnl|rn3|chr10 (95626195-95626651) | |
| 169-441, gnl|bosTau2|chr19 (40449392-40449120) | |
| 169-441, gnl|Hg17|chr17 (59197274-59197003) | |
| 169-441, gnl|Mm7|chr11 (106322393-106322121) | |
| 549-724, gnl|bosTau2|chr19 (40448081-40447906) | |
| 549-724, gnl|canFam2|chr9 (14853812-14854010) | |
| 549-724, gnl|dasNov1|scaffold_35576 (3181-3379) | |
| 549-724, gnl|echTel1|scaffold_313474 (114427-114229) | |
| 549-724, gnl|fr1|chrUn (140114308-140114118) | |
| 549-724, gnl|galGal2|chr27 (1257047-1257242) | |
| 549-724, gnl|hg17|chr17 (59195102-59195300) | |
| 549-724, gnl|Hg17|chr17 (59195282-59195107) | |
| 549-724, gnl|loxAfr1|scaffold_47806 (9079-9277) | |
| 549-724, gnl|mm7|chr11 (106319323-106319520) | |
| 549-724, gnl|Mm7|chr11 (106319503-106319328) | |
| 549-724, gnl|monDom2|scaffold_18 (35747016-35746817) | |
| 549-724, gnl|oryCun1|scaffold_202889 (125828-126023) | |
| 549-724, gnl|panTro1|chr19 (45941083-45940885) | |
| 549-724, gnl|rheMac2|chr16 (59276578-59276776) | |
| 549-724, gnl|rn3|chr10 (95620544-95620741) | |
| 549-724, gnl|tetNig1|chr3 (13702034-13701832) | |
| 549-724, gnl|xenTro1|scaffold_221 (1570558-1570762) | |
| 1013-1124, gnl|bosTau2|chr19 (40443565-40443454) | |
| 1013-1124, gnl|canFam2|chr9 (14848009-14848173) | |
| 1013-1124, gnl|echTel1|scaffold_313474 (117942-117775) | |
| 1013-1124, gnl|fr1|chrUn (140115138-140114994) | |
| 1013-1124, gnl|galGal2|chr27 (1254260-1254421) | |
| 1013-1124, gnl|hg17|chr17 (59187315-59187482) | |
| 1013-1124, gnl|Hg17|chr17 (59187443-59187332) | |
| 1013-1124, gnl|loxAfr1|scaffold_47806 (4057-4224) | |
| 1013-1124, gnl|mm7|chr11 (106313945-106314110) | |
| 1013-1124, gnl|Mm7|chr11 (106314073-106313962) | |
| 1013-1124, gnl|monDom2|scaffold_18 (35752480-35752339) | |
| 1013-1124, gnl|panTro1|chr19 (45948849-45948682) | |
| 1013-1124, gnl|rheMac2|chr16 (59269185-59269352) | |
| 1013-1124, gnl|rn3|chr10 (95614649-95614814) | |
| 1013-1124, gnl|tetNig1|chr3 (13702801-13702667) | |
| 1013-1124, gnl|xenTro1|scaffold_221 (1569123-1569275) | |
| 1253-1380, gnl|bosTau2|chr19 (40441142-40441015) | |
| 1253-1380, gnl|canFam2|chr9 (14845425-14845553) | |
| 1253-1380, gnl|dasNov1|scaffold_259631 (231-359) | |
| 1253-1380, gnl|echTel1|scaffold_313474 (123523-123395) | |
| 1253-1380, gnl|fr1|chrUn (140115617-140115496) | |
| 1253-1380, gnl|galGal2|chr27 (1252176-1252304) | |
| 1253-1380, gnl|hg17|chr17 (59183408-59183536) | |
| 1253-1380, gnl|Hg17|chr17 (59183539-59183411) | |
| 1253-1380, gnl|loxAfr1|scaffold_47806 (810-937) | |
| 1253-1380, gnl|mm7|chr11 (106311421-106311549) | |
| 1253-1380, gnl|Mm7|chr11 (106311551-106311424) | |
| 1253-1380, gnl|monDom2|scaffold_18 (35756272-35756144) | |
| 1253-1380, gnl|oryCun1|scaffold_202889 (114750-114878) | |
| 1253-1380, gnl|panTro1|chr19 (45952759-45952631) | |
| 1253-1380, gnl|rheMac2|chr16 (59265269-59265397) | |
| 1253-1380, gnl|rn3|chr10 (95612237-95612365) | |
| 1253-1380, gnl|tetNig1|chr3 (13703302-13703174) | |
| 1253-1380, gnl|xenTro1|scaffold_221 (1566716-1566838) | |
| 1546-2100, gnl|bosTau2|chr19 (40437676-40437122) | |
| 1546-2100, gnl|Hg17|chr17 (59178055-59177488) | |
| 1546-2100, gnl|Mm7|chr11 (106310059-106309532) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| kid (0.778412) | |
| tra (0.492368) | |
| ste (0.405625) | |
| ret (0.3862) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pan (0.23596) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.778412) | |
| tra (0.492368) | |
| ste (0.405625) | |
| ret (0.3862) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| lyg (0.266205) | |
| sug (0.254582) | |
| pan (0.23596) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| eje (0.0988338) |