Non-Coding RNA Search

Ss1.1-Pig4-TMW8023M14.3

Sequence:


               
               CTGGACGGCAAGCCTGGAAGAGAATTTTCAGAGCAGTTTATTCGGCAAGTTTGCACTGAT
GTATTAAGAGCCCAGCTACCAGCCTTGCTCCAGAGTGGGAGAATTCAAAGTTGTGACCAT
TGCCAGTCCCAGCACGGCTCCCCCGGGATTCCTGGGCCACCTGGTCCCATGGGCCCAGAA
GGTCCCCGAGGCTTCCCTGGTTTGCCTGGAAGAGATGGTGTTCCAGGACTAATGGGTGCT
CCCGGACGCCCAGGTGCCAAAGGATTAAAAGGTCTACCGGGACGAAATGGGGCAAAGGGG
AGCCAAGGGCTTGGGTACCCTGGAGAACAAGGCCCTCCTGGTCCACCAGGTCCAGAGGGC
CCCCCTGGAATAAGCAAAGAAGGTCCTCCCGGAGATCCTGGTCTCCCCGGGAAAGACGGA
GACCATGGAAAACCTGGAACCCAAGGGCAGCCTGGCCCCCCGGGCATCTGCGACCCCTCG
CTGTGTTTCAGTGTCATTGTCGGAAGAGATCCCTTCAGAAAAGGACCAAACTATTAGCGT
CTGATGCCTCATTCAGCAGCCTGGGCATGGTGCTGTTCTTTCGTGGTCTTTGCATCTCAG
GAAGAGAACAACAGTAATCCCTTGAAAAGAAACTAAAGTACCTCGGTGTTTTTATTATTG
TTTTTTTCCTTAAGGAAAAATATAAAAGGTCACGTATACTGATTGTAAAGGCGCCGCGGT
TATTCGGAGCCTTTAGATTCGTAGCATTAACTAAATCTCAAGGGTTTCTTATAAGTCCAT
TCGTTTTAATCAAAAGTCGAATATTAAAAAAGCCACCATCGCCTGTCAGCCGGTCAGTTT
CCGTCACTGTGAAAAGTTTCACATTCAGCTTCCGGGCAGCAGAGTATTTGAGTTCGATTT
CTTGTCTGTGTGAATTTGTTTCGTATCTCCTAGCGCGTGCTTCTGCACTAGCCCAGCTGT
GCCGCTGGCCGTGGGAAAGGAGGTGAGGACTGATGTTCAGTTGGGGACAGACCACAGAGC
CATACCCGCTCCAGGGTCTGTGCTCCCTGAGCAGGGCTGATGGGAGTTAAATATTCAGCG
TGTTAAATATCACCTCTGAAAGAGATGGATATGCTTCTTATCCCATCGGCAAATTTGCAA
ATCATTTGATGAATGATGATGCTAAGAAAGAGCATTGATGACATCAGGAGGGGTCAAAAT
ATGTAACATTAAAAACGTTCTGGAAGAAAAAGTTTCACTGTACCTGGTCAGGATGTTCAG
AGGAGTCAAGTTCAGAAGAACTAAAAAGACTTTCTTCTTCATACTTGCTTATTAAGTGGA
ATGTTCGTTGCATGCTTTCATTTTCCATTTCACTTATTATCTGTGTATGTTCATATATGT
TAACTTTTATTGTAGCAAAGCTAATGGGCATCAGTGCTCTAGTTGACAGGAAAGGCAACT
CCACAGATCCTAGGATGTCTTGATATTTTTAGCAGACTTTAAAATATTATAAACGGTCTT
TGTGTACTGTACTTAATGCTTCGTTGTTAAGGAACATAATTTGAGATATTTCATCCTTAT
CATGCTCTAAATTTTGTTACATGCTTCTTATTCAAAGTACAATAAAATTTTGTACAGGCC
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCTTTTAAAAATTTCCCTTGGG
GGGGCCAAATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGACGGCAAGCCTGGAAGAGAATTTTCAGAGCAGTTTATTCGGCAAGTTTGCACTGAT
GTATTAAGAGCCCAGCTACCAGCCTTGCTCCAGAGTGGGAGAATTCAAAGTTGTGACCAT
TGCCAGTCCCAGCACGGCTCCCCCGGGATTCCTGGGCCACCTGGTCCCATGGGCCCAGAA
GGTCCCCGAGGCTTCCCTGGTTTGCCTGGAAGAGATGGTGTTCCAGGACTAATGGGTGCT
CCCGGACGCCCAGGTGCCAAAGGATTAAAAGGTCTACCGGGACGAAATGGGGCAAAGGGG
AGCCAAGGGCTTGGGTACCCTGGAGAACAAGGCCCTCCTGGTCCACCAGGTCCAGAGGGC
CCCCCTGGAATAAGCAAAGAAGGTCCTCCCGGAGATCCTGGTCTCCCCGGGAAAGACGGA
GACCATGGAAAACCTGGAACCCAAGGGCAGCCTGGCCCCCCGGGCATCTGCGACCCCTCG
CTGTGTTTCAGTGTCATTGTCGGAAGAGATCCCTTCAGAAAAGGACCAAACTATTAGCGT
CTGATGCCTCATTCAGCAGCCTGGGCATGGTGCTGTTCTTTCGTGGTCTTTGCATCTCAG
GAAGAGAACAACAGTAATCCCTTGAAAAGAAACTAAAGTACCTCGGTGTTTTTATTATTG
TTTTTTTCCTTAAGGAAAAATATAAAAGGTCACGTATACTGATTGTAAAGGCGCCGCGGT
TATTCGGAGCCTTTAGATTCGTAGCATTAACTAAATCTCAAGGGTTTCTTATAAGTCCAT
TCGTTTTAATCAAAAGTCGAATATTAAAAAAGCCACCATCGCCTGTCAGCCGGTCAGTTT
CCGTCACTGTGAAAAGTTTCACATTCAGCTTCCGGGCAGCAGAGTATTTGAGTTCGATTT
CTTGTCTGTGTGAATTTGTTTCGTATCTCCTAGCGCGTGCTTCTGCACTAGCCCAGCTGT
GCCGCTGGCCGTGGGAAAGGAGGTGAGGACTGATGTTCAGTTGGGGACAGACCACAGAGC
CATACCCGCTCCAGGGTCTGTGCTCCCTGAGCAGGGCTGATGGGAGTTAAATATTCAGCG
TGTTAAATATCACCTCTGAAAGAGATGGATATGCTTCTTATCCCATCGGCAAATTTGCAA
ATCATTTGATGAATGATGATGCTAAGAAAGAGCATTGATGACATCAGGAGGGGTCAAAAT
ATGTAACATTAAAAACGTTCTGGAAGAAAAAGTTTCACTGTACCTGGTCAGGATGTTCAG
AGGAGTCAAGTTCAGAAGAACTAAAAAGACTTTCTTCTTCATACTTGCTTATTAAGTGGA
ATGTTCGTTGCATGCTTTCATTTTCCATTTCACTTATTATCTGTGTATGTTCATATATGT
TAACTTTTATTGTAGCAAAGCTAATGGGCATCAGTGCTCTAGTTGACAGGAAAGGCAACT
CCACAGATCCTAGGATGTCTTGATATTTTTAGCAGACTTTAAAATATTATAAACGGTCTT
TGTGTACTGTACTTAATGCTTCGTTGTTAAGGAACATAATTTGAGATATTTCATCCTTAT
CATGCTCTAAATTTTGTTACATGCTTCTTATTCAAAGTACAATAAAATTTTGTACAGGCC
TGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGGGCCTTTTAAAAATTTCCCTTGGG
GGGGCCAAATTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55626830|ref|XP_518554.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55626830|ref|XP_518554.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               108-1012, - strand, RNAz p=0.972286
               

               
               348-506, - strand, RNAz p=0.999302
               

               
               625-781, - strand, RNAz p=0.827685

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-1012, - strand, RNAz p=0.972286
               

               
               348-506, - strand, RNAz p=0.999302
               

               
               625-781, - strand, RNAz p=0.827685

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               69-273, gnl|bosTau2|chr23 (3516041-3516245)
               

               
               69-273, gnl|Hg17|chr6 (56032977-56032773)
               


               
               348-1624, gnl|bosTau2|chr23 (3519655-3520938)
               

               
               348-1624, gnl|Hg17|chr6 (56030603-56029346)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-273, gnl|bosTau2|chr23 (3516041-3516245)
               

               
               69-273, gnl|Hg17|chr6 (56032977-56032773)
               


               
               348-1624, gnl|bosTau2|chr23 (3519655-3520938)
               

               
               348-1624, gnl|Hg17|chr6 (56030603-56029346)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               eep (0.490256)
               

               
               ski (0.440205)
               

               
               gul (0.355177)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.490256)
               

               
               ski (0.440205)
               

               
               gul (0.355177)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	108-1012, - strand, RNAz p=0.972286
	348-506, - strand, RNAz p=0.999302
	625-781, - strand, RNAz p=0.827685

	69-273, gnl\|bosTau2\|chr23 (3516041-3516245)
	69-273, gnl\|Hg17\|chr6 (56032977-56032773)

	348-1624, gnl\|bosTau2\|chr23 (3519655-3520938)
	348-1624, gnl\|Hg17\|chr6 (56030603-56029346)

	eep (0.490256)
	ski (0.440205)
	gul (0.355177)
	hea (0.204499)
	nep (0.183925)
	isp (0.150376)
	fat (0.147427)
	kid (0.129735)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	eru (0.120048)
	eje (0.0988338)