Non-Coding RNA Search

Ss1.1-Pig4-TMW8023M17.3

Sequence:


               
               ATCCAAGTCTGTGGACAAATCAGATGAAGACCTACAGTTTCCCAAAGAGCTGATGGAGGA
CTGGAGTGCCATGGAGGTGTGTGTAGACTGCAAAAAGTTCATTTCAGAGATCATCAGTTC
AAGCCGGCATAGCCTCGTGTTGGCCAACAAGAGAGCCCGATTGAAAAGGAAAACCCAGTC
TTTCTCCATGGCTTCTGCAGGCCCCTCGGAGTACTGGCCCTCGGAGAGGACCATCAGCGA
GGTCTGAGCCCTGCCCTGTGCCCGGCGGCCTCGGCGGAGGGCACTAGCTGGCCCGGCTCA
GCCTCGGGCTAGAGGTTGCATCAGGGCAGGTTTCTGCTGCATCACCTTATTCCACAGACT
GAGTACTGTGTTCACCTCGATGACACATGACAGGTCAGCCAGTGGCTTGTCCACTCTGAG
AGAGGACAGCGGTTTGAAACTTGCTTTTGTGTGTGTGTGTGTGTGTGGATGTGGAGGCAG
AACCTTTTTCCTTAGTTCAGTTCTTTACTGCTCCTCACATAGTTGTCTGACTAAGGCAGA
AAGCGTCTCAGCACGAACTGGGTCTAAGACGGCGTGGACTTCGGCGCTGCCCGCACGCGC
TAAGTCACAATGGCATCTCCAGGACATGGTCCTCGCCGATGTGCGCAGCGCTGCCTGTCC
CAGCACAGAACCCGCAGGGTTTGCTCTGACTCTCTGGCTGACTGTGTGGGACTGTTCTCT
GGGGTGAGGGCCACGCCCATGCAGGACGTCGATGCCGCTCTGCTCCAGGTGGGTGGCCGT
GTCCTCCACGCTGCTGGCTCTGCCCCGAGTGGGGGAGCATCTTCGGAGCAGTGACAGCTC
CTCTGCTCTTGTCTTGAATGTATTATGGTTACCAGTCCTTTCATAACGGGGATCTCAGAA
GTAAAGTTTTGTGGTATTTTGGGTCAAAGAAAGGTTAGAAGTTTGTCCAGGGGTTGAGCG
TTTTGGCCAGCTGTGACAAGACTGTGACCGTGAAGGATGCCCTTGTGGGCCGCACTGCAG
GGAGTGAGCTGGAACCCCACATTCCCAACCACAGTGTCATAACTTTATAGTCTCGCTATC
ACGCCTAAATTCAGCCACAATTTGGTACCTAAGGTCTCAAACTGAAATTTATTTATTTTT
ATAAATGAATTTTAAATGGGAAAAAAAAAAACCATTGTCTAGTTCTTTTAAAATTACAAG
AAAATTAACCTGCTGATAGGCTTTTTGGATGCTTTTTGCACACGTTTTCCCTGTGAGCGG
CTTGAGTGAGCAGGGTGGGGGTTTGGTGAGGTAGGTTGGAGGGTAGCATTGTACACCAGT
AATCTCTCGGCTTATTTGGCCCATTCCCTGGGCCGTCCCTTGTTATTTTGGATGCTTAGC
AATGTCCCCAGCAATGACCCCAGTCAAGGTGCCAGTCTCTGCGGTTCCCTGAAGCTTCTC
CGTAGTCAGCGCTGCGACAGCACCACTTAACCCAAGGCATGGCGGTCACACTTCATGCCA
TGTCCAGATAGGGTAACATTTCTGTAGTACATTAACAGTGATACCTCAGAACTGCGCTGC
GAATTTTTAATGACTGAAATTTATAAATTAGTAAATGGCTTAAAATTGCTTATACTTATA
AAATAAACTTTACCAATTGACTGAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCAAGTCTGTGGACAAATCAGATGAAGACCTACAGTTTCCCAAAGAGCTGATGGAGGA
CTGGAGTGCCATGGAGGTGTGTGTAGACTGCAAAAAGTTCATTTCAGAGATCATCAGTTC
AAGCCGGCATAGCCTCGTGTTGGCCAACAAGAGAGCCCGATTGAAAAGGAAAACCCAGTC
TTTCTCCATGGCTTCTGCAGGCCCCTCGGAGTACTGGCCCTCGGAGAGGACCATCAGCGA
GGTCTGAGCCCTGCCCTGTGCCCGGCGGCCTCGGCGGAGGGCACTAGCTGGCCCGGCTCA
GCCTCGGGCTAGAGGTTGCATCAGGGCAGGTTTCTGCTGCATCACCTTATTCCACAGACT
GAGTACTGTGTTCACCTCGATGACACATGACAGGTCAGCCAGTGGCTTGTCCACTCTGAG
AGAGGACAGCGGTTTGAAACTTGCTTTTGTGTGTGTGTGTGTGTGTGGATGTGGAGGCAG
AACCTTTTTCCTTAGTTCAGTTCTTTACTGCTCCTCACATAGTTGTCTGACTAAGGCAGA
AAGCGTCTCAGCACGAACTGGGTCTAAGACGGCGTGGACTTCGGCGCTGCCCGCACGCGC
TAAGTCACAATGGCATCTCCAGGACATGGTCCTCGCCGATGTGCGCAGCGCTGCCTGTCC
CAGCACAGAACCCGCAGGGTTTGCTCTGACTCTCTGGCTGACTGTGTGGGACTGTTCTCT
GGGGTGAGGGCCACGCCCATGCAGGACGTCGATGCCGCTCTGCTCCAGGTGGGTGGCCGT
GTCCTCCACGCTGCTGGCTCTGCCCCGAGTGGGGGAGCATCTTCGGAGCAGTGACAGCTC
CTCTGCTCTTGTCTTGAATGTATTATGGTTACCAGTCCTTTCATAACGGGGATCTCAGAA
GTAAAGTTTTGTGGTATTTTGGGTCAAAGAAAGGTTAGAAGTTTGTCCAGGGGTTGAGCG
TTTTGGCCAGCTGTGACAAGACTGTGACCGTGAAGGATGCCCTTGTGGGCCGCACTGCAG
GGAGTGAGCTGGAACCCCACATTCCCAACCACAGTGTCATAACTTTATAGTCTCGCTATC
ACGCCTAAATTCAGCCACAATTTGGTACCTAAGGTCTCAAACTGAAATTTATTTATTTTT
ATAAATGAATTTTAAATGGGAAAAAAAAAAACCATTGTCTAGTTCTTTTAAAATTACAAG
AAAATTAACCTGCTGATAGGCTTTTTGGATGCTTTTTGCACACGTTTTCCCTGTGAGCGG
CTTGAGTGAGCAGGGTGGGGGTTTGGTGAGGTAGGTTGGAGGGTAGCATTGTACACCAGT
AATCTCTCGGCTTATTTGGCCCATTCCCTGGGCCGTCCCTTGTTATTTTGGATGCTTAGC
AATGTCCCCAGCAATGACCCCAGTCAAGGTGCCAGTCTCTGCGGTTCCCTGAAGCTTCTC
CGTAGTCAGCGCTGCGACAGCACCACTTAACCCAAGGCATGGCGGTCACACTTCATGCCA
TGTCCAGATAGGGTAACATTTCTGTAGTACATTAACAGTGATACCTCAGAACTGCGCTGC
GAATTTTTAATGACTGAAATTTATAAATTAGTAAATGGCTTAAAATTGCTTATACTTATA
AAATAAACTTTACCAATTGACTGAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|16877102|gb|AAH16825.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|16877102|gb|AAH16825.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-968, gnl|bosTau2|chr24 (29146200-29147169)
               

               
               1-968, gnl|Hg17|chr18 (12439883-12438815)
               

               
               1-968, gnl|Mm7|chr18 (67883832-67882829)
               


               
               1036-1642, gnl|bosTau2|chr24 (29147193-29147788)
               

               
               1036-1642, gnl|Hg17|chr18 (12438745-12438115)
               

               
               1036-1642, gnl|Mm7|chr18 (67882777-67882162)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-968, gnl|bosTau2|chr24 (29146200-29147169)
               

               
               1-968, gnl|Hg17|chr18 (12439883-12438815)
               

               
               1-968, gnl|Mm7|chr18 (67883832-67882829)
               


               
               1036-1642, gnl|bosTau2|chr24 (29147193-29147788)
               

               
               1036-1642, gnl|Hg17|chr18 (12438745-12438115)
               

               
               1036-1642, gnl|Mm7|chr18 (67882777-67882162)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fat (0.147427)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-968, gnl\|bosTau2\|chr24 (29146200-29147169)
	1-968, gnl\|Hg17\|chr18 (12439883-12438815)
	1-968, gnl\|Mm7\|chr18 (67883832-67882829)

	1036-1642, gnl\|bosTau2\|chr24 (29147193-29147788)
	1036-1642, gnl\|Hg17\|chr18 (12438745-12438115)
	1036-1642, gnl\|Mm7\|chr18 (67882777-67882162)