Non-Coding RNA Search

Ss1.1-Pig4-TMW8023M21.3

Sequence:


               
               TCCAGCAGCACCGAGAGGATGTCGAACAAGGTGGAAGAGAATCACAGAAGGGGGAGCTAC
CAGGGTCAGGAAGGCAGTGCCTCCTTTCCACTGTCCTCTGATTAGATGCCCTGTTCCCTT
ACCCTAAACACAATTTTTTTTTTTTTTTAACTTTTTCCTAGTCAACTAATAAAGGCAATC
ATGACAACCAACATTCCAAACTTGCCCCAGGGACACCCGCGCAGCGGACGTTAATGCGCA
TGCGAGCGGTCCGTGCACAAGAACTTGGGGTTCAAAGTCACGATTCACCAAGGGGAGAAA
GTGACTCCCCTTGTGGGATTATGTTTGTGTGTTGGGGGGCGGGGGTACTAAAACAGTATT
ATCTTTGAAAGTTGTAGGGACATGCGTATAGCAATGTTATCCCGTCATGATGGCTAGAAT
TGTGCCTTTTCTGAGTTTTTGAACCTTGATCTCCTCGGTGAACCTTTTAATCCACTTTCC
ACTGCGCACGTCAATGTGGTTTTGATTCGTTTTTAACCACTGGAATTTTTCCGTGCCCTC
ATTTTTAGTTCGTGATTTTTGCACTTTGAGATTGGAACGCCATGTCTATTTGGTTCCTTC
CCCTCCACCCCACCCTGCAGGCTTGTCACAGTCTGCTTGCTCTCAGTGTGACAAAGTGGA
TCCCCAAGGATGACACGCAGGATGGCTCACATATTGTCCCGCATACCACTTTTTCCAGAA
CATAATGCATGTGTTGTACCTCGACTTGCTAAAACTGATTAGCAGAAAGGCATGGCTAAG
GATGTCGGCAGTAAAAATAAATAAGTAAACAAAACAAAGATCTCCTGCTCTCTCTCTCTG
CCCAGCCTCAATGTGCTCATCATATGCTTAAGGTTGCTGCATTTTTATTATTTTCTTGAC
AGGATCAAAGGACTGAAGACTTTTTTTTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGCAGCACCGAGAGGATGTCGAACAAGGTGGAAGAGAATCACAGAAGGGGGAGCTAC
CAGGGTCAGGAAGGCAGTGCCTCCTTTCCACTGTCCTCTGATTAGATGCCCTGTTCCCTT
ACCCTAAACACAATTTTTTTTTTTTTTTAACTTTTTCCTAGTCAACTAATAAAGGCAATC
ATGACAACCAACATTCCAAACTTGCCCCAGGGACACCCGCGCAGCGGACGTTAATGCGCA
TGCGAGCGGTCCGTGCACAAGAACTTGGGGTTCAAAGTCACGATTCACCAAGGGGAGAAA
GTGACTCCCCTTGTGGGATTATGTTTGTGTGTTGGGGGGCGGGGGTACTAAAACAGTATT
ATCTTTGAAAGTTGTAGGGACATGCGTATAGCAATGTTATCCCGTCATGATGGCTAGAAT
TGTGCCTTTTCTGAGTTTTTGAACCTTGATCTCCTCGGTGAACCTTTTAATCCACTTTCC
ACTGCGCACGTCAATGTGGTTTTGATTCGTTTTTAACCACTGGAATTTTTCCGTGCCCTC
ATTTTTAGTTCGTGATTTTTGCACTTTGAGATTGGAACGCCATGTCTATTTGGTTCCTTC
CCCTCCACCCCACCCTGCAGGCTTGTCACAGTCTGCTTGCTCTCAGTGTGACAAAGTGGA
TCCCCAAGGATGACACGCAGGATGGCTCACATATTGTCCCGCATACCACTTTTTCCAGAA
CATAATGCATGTGTTGTACCTCGACTTGCTAAAACTGATTAGCAGAAAGGCATGGCTAAG
GATGTCGGCAGTAAAAATAAATAAGTAAACAAAACAAAGATCTCCTGCTCTCTCTCTCTG
CCCAGCCTCAATGTGCTCATCATATGCTTAAGGTTGCTGCATTTTTATTATTTTCTTGAC
AGGATCAAAGGACTGAAGACTTTTTTTTTTTTTTTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-935, gnl|bosTau2|chr14 (19506797-19505878)
               

               
               1-935, gnl|Hg17|chr8 (70734007-70734974)
               

               
               1-935, gnl|Mm7|chr1 (13004516-13005464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-935, gnl|bosTau2|chr14 (19506797-19505878)
               

               
               1-935, gnl|Hg17|chr8 (70734007-70734974)
               

               
               1-935, gnl|Mm7|chr1 (13004516-13005464)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               eru (0.240096)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               csk (0.140746)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	1-935, gnl\|bosTau2\|chr14 (19506797-19505878)
	1-935, gnl\|Hg17\|chr8 (70734007-70734974)
	1-935, gnl\|Mm7\|chr1 (13004516-13005464)

	eru (0.240096)
	csk (0.140746)
	sug (0.127291)
	ese (0.126502)
	eep (0.122564)
	cbl (0.114797)
	jca (0.11396)
	eje (0.0988338)