Non-Coding RNA Search

Ss1.1-Pig4-TMW8023N18.3

Sequence:


               
               CGACAGTTCTACCACAGTGTCCAGGATTTGTCCGGAGGCTCCAGACAGCATGAGACTCCC
TCGAACCGCCCCCTGAATGAGCCGCTAACCCCTCAGGGTCCCAGCCTTTCCCCTGCCAGC
TCCTGCACCCAGCACCGCGACCCTGAGCACTTCCCCTTCCCTGCCCCGGCCAATGCCCCC
CTGCAGCGCATCCGCTCCACGTCCACCCCCAACGTCCACATGGTCAGCACCACCGCCCCC
ATGGACTCCGGCCTGGTCCAGCTCACTGCCCAGAGTTTCAACACTGATGCTGCTGGTAAT
AGAGGTGGTGGCGACGGAGCCCCCCGGGGGAGCCCCAGCCCAGCCAGCGTGTCCTCGGGG
AGGAAGTCCCCACATTCCAAGTCGCCATCTGAGCAGCGGGAGCGGAAGTCCTTGGCCGAC
GACAAGAAGAAAGTGAAGAATCTGGGGTACCGGGACTCGGGCTATTACTGGGAGGTGCCC
CCCAGTGAGGTGCAGCTGCTGAAGAGGATCGGGACGGGCTCGTTTGGCACCGTGTTTCGC
GGGCGGTGGCATGGCGATGTGGCCGTGAAGGTGCTCAAGGTGGCCCAGCCCACAGCCGAG
CAGGCCCAGGCCTTCAAGAACGAGATGCAAGTGCTCAGGAAGACGCGGCACGTCAACATC
TTGCTGTTCATGGGCTTCATGACCCGGCCCGGCTTTGCCATCATCACACAGTGGTGCGAG
GGCTCCAGTCTGTACCACCACCTGCACGTGGCCGACACACGCTTCGACATGGTCCAGCTC
ATCGATGTGGCCCGGCAGACTGCCCAGGGCATGGACTACCTCCATGCCAAGAACATCATT
CACCGAGATCTCAAGTCTAACAACATCTTCCTACACGAGGGCCTCACGGTGAAGATCGGG
GACTTCGGCCTGGCCACAGTGAAGACGCGGTGGAGCGGGGCCCAGCCCTTGGAGCAGCCC
TCGGGCTCCGTGCTGTGGATGGCGGCTGAGGTGATCCGGATGCAGGACCCGAACCCCTAC
AGCTTCCAGTCTGACGTCTATGCCTATGGGGTGGTGCTCTACGAGCTCATGACCGGCTCG
CTGCCTTACAGCCACATTGGCAGCCGTGACCAGATTATCTTCATGGTGGGCCGTGGCTAT
CTGTCCCCGGACCTCAGCAAAATCTCCAGCAACTGCCCCAAGGCCATGCGGCGCCTGCTG
TCTGACTGCCTCAAGTTCCAGCGGGAGGAGCGACCCCTCTTCCCCCAGATCCTGGCCACG
ATTGAGCTGCTGCAGCGGTCACTCCCCAAGATTGAGCGGAGTGCCTCGGAACCCTCCTTG
CACCGAACCCAGGCTGATGAGTTGCCTGCCTGCCTACTCAGCGCAGCCCGCCTTGTGCCT
TAGGCCCCACCCCCAGCCACCAGGGAGCCAATCTCAGCCTGCCACGCCAAGGAGCCCTGC
CCACCAACCAATCAATGTTCTGTCTCTGCCCTGATACTGCCTCAGGATCCCCCATCCCCG
CCCTGGGAGATGAGGGGGTCCCCATGTACTTTTCCAGTTCCTCTGGAATTGGGGGACCCC
CCAAAGACTGGGACCCCTGCCTCCTCCATAATTGGGTTTGTTCTTGGCTTTGGGGATACT
TATAAATTCAGGGGCTCCTCCATCTCCAATGGCTGGGATTTGTGGCAGGGATTCCACTCC
GAGCCTCTCTGGAATTTGTGCCTGATGTGCCTTCCACTGGATTTTGGGGTCCCCAGCACC
CCGTGTGGATTTGGGGGGGTCCCCTCTGTCTCTCCCTCACCATTCAAGGACTCCCCTGTT
TCTTCACCAAGAAGCACAGAATTCTGCTGGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACAGTTCTACCACAGTGTCCAGGATTTGTCCGGAGGCTCCAGACAGCATGAGACTCCC
TCGAACCGCCCCCTGAATGAGCCGCTAACCCCTCAGGGTCCCAGCCTTTCCCCTGCCAGC
TCCTGCACCCAGCACCGCGACCCTGAGCACTTCCCCTTCCCTGCCCCGGCCAATGCCCCC
CTGCAGCGCATCCGCTCCACGTCCACCCCCAACGTCCACATGGTCAGCACCACCGCCCCC
ATGGACTCCGGCCTGGTCCAGCTCACTGCCCAGAGTTTCAACACTGATGCTGCTGGTAAT
AGAGGTGGTGGCGACGGAGCCCCCCGGGGGAGCCCCAGCCCAGCCAGCGTGTCCTCGGGG
AGGAAGTCCCCACATTCCAAGTCGCCATCTGAGCAGCGGGAGCGGAAGTCCTTGGCCGAC
GACAAGAAGAAAGTGAAGAATCTGGGGTACCGGGACTCGGGCTATTACTGGGAGGTGCCC
CCCAGTGAGGTGCAGCTGCTGAAGAGGATCGGGACGGGCTCGTTTGGCACCGTGTTTCGC
GGGCGGTGGCATGGCGATGTGGCCGTGAAGGTGCTCAAGGTGGCCCAGCCCACAGCCGAG
CAGGCCCAGGCCTTCAAGAACGAGATGCAAGTGCTCAGGAAGACGCGGCACGTCAACATC
TTGCTGTTCATGGGCTTCATGACCCGGCCCGGCTTTGCCATCATCACACAGTGGTGCGAG
GGCTCCAGTCTGTACCACCACCTGCACGTGGCCGACACACGCTTCGACATGGTCCAGCTC
ATCGATGTGGCCCGGCAGACTGCCCAGGGCATGGACTACCTCCATGCCAAGAACATCATT
CACCGAGATCTCAAGTCTAACAACATCTTCCTACACGAGGGCCTCACGGTGAAGATCGGG
GACTTCGGCCTGGCCACAGTGAAGACGCGGTGGAGCGGGGCCCAGCCCTTGGAGCAGCCC
TCGGGCTCCGTGCTGTGGATGGCGGCTGAGGTGATCCGGATGCAGGACCCGAACCCCTAC
AGCTTCCAGTCTGACGTCTATGCCTATGGGGTGGTGCTCTACGAGCTCATGACCGGCTCG
CTGCCTTACAGCCACATTGGCAGCCGTGACCAGATTATCTTCATGGTGGGCCGTGGCTAT
CTGTCCCCGGACCTCAGCAAAATCTCCAGCAACTGCCCCAAGGCCATGCGGCGCCTGCTG
TCTGACTGCCTCAAGTTCCAGCGGGAGGAGCGACCCCTCTTCCCCCAGATCCTGGCCACG
ATTGAGCTGCTGCAGCGGTCACTCCCCAAGATTGAGCGGAGTGCCTCGGAACCCTCCTTG
CACCGAACCCAGGCTGATGAGTTGCCTGCCTGCCTACTCAGCGCAGCCCGCCTTGTGCCT
TAGGCCCCACCCCCAGCCACCAGGGAGCCAATCTCAGCCTGCCACGCCAAGGAGCCCTGC
CCACCAACCAATCAATGTTCTGTCTCTGCCCTGATACTGCCTCAGGATCCCCCATCCCCG
CCCTGGGAGATGAGGGGGTCCCCATGTACTTTTCCAGTTCCTCTGGAATTGGGGGACCCC
CCAAAGACTGGGACCCCTGCCTCCTCCATAATTGGGTTTGTTCTTGGCTTTGGGGATACT
TATAAATTCAGGGGCTCCTCCATCTCCAATGGCTGGGATTTGTGGCAGGGATTCCACTCC
GAGCCTCTCTGGAATTTGTGCCTGATGTGCCTTCCACTGGATTTTGGGGTCCCCAGCACC
CCGTGTGGATTTGGGGGGGTCCCCTCTGTCTCTCCCTCACCATTCAAGGACTCCCCTGTT
TCTTCACCAAGAAGCACAGAATTCTGCTGGAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|387023|gb|AAB08754.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|387023|gb|AAB08754.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               1473-1830, + strand, RNAz p=0.999442

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1473-1830, + strand, RNAz p=0.999442

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of AB208831, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB208831, +

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               99-261, gnl|bosTau2|chrX (25476374-25476536)
               

               
               99-261, gnl|Hg17|chrX (47182271-47182433)
               

               
               99-261, gnl|Mm7|chrX (19286447-19286609)
               


               
               435-639, gnl|bosTau2|chrX (25476987-25477191)
               

               
               435-639, gnl|Hg17|chrX (47182882-47183086)
               

               
               435-639, gnl|Mm7|chrX (19287062-19287266)
               


               
               973-1124, gnl|bosTau2|chrX (25479975-25480126)
               

               
               973-1124, gnl|Hg17|chrX (47185537-47185688)
               

               
               973-1124, gnl|Mm7|chrX (19291883-19292034)
               


               
               1236-1830, gnl|bosTau2|chrX (25481393-25481969)
               

               
               1236-1830, gnl|Hg17|chrX (47186963-47187559)
               

               
               1236-1830, gnl|Mm7|chrX (19293116-19293669)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-261, gnl|bosTau2|chrX (25476374-25476536)
               

               
               99-261, gnl|Hg17|chrX (47182271-47182433)
               

               
               99-261, gnl|Mm7|chrX (19286447-19286609)
               


               
               435-639, gnl|bosTau2|chrX (25476987-25477191)
               

               
               435-639, gnl|Hg17|chrX (47182882-47183086)
               

               
               435-639, gnl|Mm7|chrX (19287062-19287266)
               


               
               973-1124, gnl|bosTau2|chrX (25479975-25480126)
               

               
               973-1124, gnl|Hg17|chrX (47185537-47185688)
               

               
               973-1124, gnl|Mm7|chrX (19291883-19292034)
               


               
               1236-1830, gnl|bosTau2|chrX (25481393-25481969)
               

               
               1236-1830, gnl|Hg17|chrX (47186963-47187559)
               

               
               1236-1830, gnl|Mm7|chrX (19293116-19293669)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               nms (0.427716)
               

               
               csp (0.322373)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               csp (0.322373)
               

               
               jca (0.22792)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	99-261, gnl\|bosTau2\|chrX (25476374-25476536)
	99-261, gnl\|Hg17\|chrX (47182271-47182433)
	99-261, gnl\|Mm7\|chrX (19286447-19286609)

	435-639, gnl\|bosTau2\|chrX (25476987-25477191)
	435-639, gnl\|Hg17\|chrX (47182882-47183086)
	435-639, gnl\|Mm7\|chrX (19287062-19287266)

	973-1124, gnl\|bosTau2\|chrX (25479975-25480126)
	973-1124, gnl\|Hg17\|chrX (47185537-47185688)
	973-1124, gnl\|Mm7\|chrX (19291883-19292034)

	1236-1830, gnl\|bosTau2\|chrX (25481393-25481969)
	1236-1830, gnl\|Hg17\|chrX (47186963-47187559)
	1236-1830, gnl\|Mm7\|chrX (19293116-19293669)

	nms (0.427716)
	csp (0.322373)
	jca (0.22792)
	nep (0.183925)
	fty (0.17584)
	ill (0.175593)
	nje (0.16592)
	nco (0.161734)
	pty (0.142714)
	cst (0.140036)
	nmm (0.132802)
	ute (0.132784)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)