Ss1.1-Pig4-TMW8023O11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGTGCAGCAGCAATCAGAGATGGATACTTCTGTTAAATTTGATTTACAAATCCAAAGCT CCAATCTTTTTGACAAAGTAAGCCCGGTTGTATCTTACAAAGTTGACCTTGCTGTTTTAG CTGCTGTTGAGATAAGAGGAGTCTCAAGTCCCGATCATATCTTTCTTCCAATTCCAAATT GGGAGCACAAGGAGAACCCTGAGACTGAGGAAGACGTTGGGCCAGTTGTTCAGCACATCT ATGAGCTGAGAAACAATGGTCCAAGTTCATTCAGCAAGGCAATGCTAAATCTTCAGTGGC CTTACAAATATAACAACAACACTTTGTTGTACATCCTTCAATATGATAACTGCACTTCAG ATATGGAGATCAACCCTTTGAGAATTAAGATCTCAAATTCACAGACTGAAAAGAATGACA CAGTTGGTGGGCAGGGTGACCGGAACCATCTTGTCACTAAGCGGGATCTCACCCTCATTG AGGGAGATGTTCACACTTTGGGTTGTGGAATTGCTGAATGCTTGAAGATTGTCTGCCAGG TGGGGCGACTAGACAGAGGAAAGAGTGCAATCCTGTATGTAAAGTCTCTACTGTGGACCG AGACCTTTATGAATAAAGAAAACCAGAATCATTCATATTCTCTAAAGTCATCTGCTTCAT TTAATGTCATAGAGTTTCCTTATAAGAACCTTCCAATTGAGGACATTTTCAACTCTACAT TAGTTACCACTAATGTTACCTGGGGCATTCAGCCAGCACCCATGCCGGTGCCTGTGTGGG TGATCATTTTAGCAGTTCTAGCGGGATTGTTGTTACTGGCTGTTTTGGTATTTGTAATGT ACAGGATGGGCTTTTTTAAACGTGTCCGACCACCTCAAGAAGAACAGGAAAGGGAACAGC TTCAGCCTCATGAAAATGGTGAAGGAAACTCAGAAACTTAACTGTGATTCTTAAAGTTAC GCTACATCCAGACCCATTAGAAGTACCAACTTCATTATAGATTTTAATTTCCTTCAGGAA GAATAAAATATCAAGACTTCACTGCTGATGGTGCCCATTGGTATTAACCACAAAGTGAGA GCAATATTTGTCCACCTTTTCATTATAATTAATTTCAGATATACATTTAACATACATCCA CTGATTTGTGTTTTTAGGTATTTAAATAATAACATTTCAAGTGATCCTCTTCAATGTACA TAAGACAGGTAGTGCCTGAGTTACCACTTTATATAAAATAGTACTTCCTATAATTATTGT TTCTGATTTTGTATGTTGGAATTTGTTTTTGTTTTTGTTATTTTAAAGCAATCCAAATTT AGACCTTACTATCCACATCTTTTGTACAGATACTGAATACTAATGCACATTACACTACAG TTGAGTTTCAAGCTAACTTTTTAACTGCATAAACTTGGATTTTAATATTACCTACATGGT AGAACTTTAAATAAAAACAACAAATGATCCCATCAAAACACTTTAATAGCAAAGGTACAG TTTTTTTGTTTTACTATGAATATTGGGTACATGCTATTAAATTTTTATTTATATTTTTAG TCACAATCCATTTTATTGCATTTTATTTTGTATAAGTTCTATTTCAAATCCTTTAAGTCA GCTTATACTAAAAATTAGTTCTATAGTCAAAAATGCCTTTTTTGTGTAATATTTAATTTC TGCTAGACATCATGATGCTTAAAGCCATATGAGGTGGAAATCATTTCCAAAGTATGTTTA TTCCATTGCATTAGTCTGGCTATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGTGCAGCAGCAATCAGAGATGGATACTTCTGTTAAATTTGATTTACAAATCCAAAGCT CCAATCTTTTTGACAAAGTAAGCCCGGTTGTATCTTACAAAGTTGACCTTGCTGTTTTAG CTGCTGTTGAGATAAGAGGAGTCTCAAGTCCCGATCATATCTTTCTTCCAATTCCAAATT GGGAGCACAAGGAGAACCCTGAGACTGAGGAAGACGTTGGGCCAGTTGTTCAGCACATCT ATGAGCTGAGAAACAATGGTCCAAGTTCATTCAGCAAGGCAATGCTAAATCTTCAGTGGC CTTACAAATATAACAACAACACTTTGTTGTACATCCTTCAATATGATAACTGCACTTCAG ATATGGAGATCAACCCTTTGAGAATTAAGATCTCAAATTCACAGACTGAAAAGAATGACA CAGTTGGTGGGCAGGGTGACCGGAACCATCTTGTCACTAAGCGGGATCTCACCCTCATTG AGGGAGATGTTCACACTTTGGGTTGTGGAATTGCTGAATGCTTGAAGATTGTCTGCCAGG TGGGGCGACTAGACAGAGGAAAGAGTGCAATCCTGTATGTAAAGTCTCTACTGTGGACCG AGACCTTTATGAATAAAGAAAACCAGAATCATTCATATTCTCTAAAGTCATCTGCTTCAT TTAATGTCATAGAGTTTCCTTATAAGAACCTTCCAATTGAGGACATTTTCAACTCTACAT TAGTTACCACTAATGTTACCTGGGGCATTCAGCCAGCACCCATGCCGGTGCCTGTGTGGG TGATCATTTTAGCAGTTCTAGCGGGATTGTTGTTACTGGCTGTTTTGGTATTTGTAATGT ACAGGATGGGCTTTTTTAAACGTGTCCGACCACCTCAAGAAGAACAGGAAAGGGAACAGC TTCAGCCTCATGAAAATGGTGAAGGAAACTCAGAAACTTAACTGTGATTCTTAAAGTTAC GCTACATCCAGACCCATTAGAAGTACCAACTTCATTATAGATTTTAATTTCCTTCAGGAA GAATAAAATATCAAGACTTCACTGCTGATGGTGCCCATTGGTATTAACCACAAAGTGAGA GCAATATTTGTCCACCTTTTCATTATAATTAATTTCAGATATACATTTAACATACATCCA CTGATTTGTGTTTTTAGGTATTTAAATAATAACATTTCAAGTGATCCTCTTCAATGTACA TAAGACAGGTAGTGCCTGAGTTACCACTTTATATAAAATAGTACTTCCTATAATTATTGT TTCTGATTTTGTATGTTGGAATTTGTTTTTGTTTTTGTTATTTTAAAGCAATCCAAATTT AGACCTTACTATCCACATCTTTTGTACAGATACTGAATACTAATGCACATTACACTACAG TTGAGTTTCAAGCTAACTTTTTAACTGCATAAACTTGGATTTTAATATTACCTACATGGT AGAACTTTAAATAAAAACAACAAATGATCCCATCAAAACACTTTAATAGCAAAGGTACAG TTTTTTTGTTTTACTATGAATATTGGGTACATGCTATTAAATTTTTATTTATATTTTTAG TCACAATCCATTTTATTGCATTTTATTTTGTATAAGTTCTATTTCAAATCCTTTAAGTCA GCTTATACTAAAAATTAGTTCTATAGTCAAAAATGCCTTTTTTGTGTAATATTTAATTTC TGCTAGACATCATGATGCTTAAAGCCATATGAGGTGGAAATCATTTCCAAAGTATGTTTA TTCCATTGCATTAGTCTGGCTATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1203-1386, - strand, RNAz p=0.720442 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1203-1386, - strand, RNAz p=0.720442 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 241-389, gnl|bosTau2|chr2 (5102174-5102337) | |
| 241-389, gnl|canFam2|chr36 (31908577-31908783) | |
| 241-389, gnl|danRer3|chr9 (13525331-13525518) | |
| 241-389, gnl|dasNov1|scaffold_217862 (898-1104) | |
| 241-389, gnl|echTel1|scaffold_319278 (124274-124067) | |
| 241-389, gnl|fr1|chrUn (320582108-320582301) | |
| 241-389, gnl|galGal2|chr7 (1283133-1282939) | |
| 241-389, gnl|hg17|chr2 (187358968-187359177) | |
| 241-389, gnl|Hg17|chr2 (187358990-187359153) | |
| 241-389, gnl|loxAfr1|scaffold_41194 (1902-2109) | |
| 241-389, gnl|mm7|chr2 (83639777-83639983) | |
| 241-389, gnl|Mm7|chr2 (83639797-83639960) | |
| 241-389, gnl|monDom2|scaffold_2 (91215917-91216124) | |
| 241-389, gnl|oryCun1|scaffold_126082 (5514-5308) | |
| 241-389, gnl|panTro1|chr13 (77192683-77192893) | |
| 241-389, gnl|rheMac2|chr12 (50282906-50283115) | |
| 241-389, gnl|rn3|chr3 (66917302-66917507) | |
| 241-389, gnl|tetNig1|chrUn_random (42086378-42086187) | |
| 241-389, gnl|xenTro1|scaffold_48 (2515403-2515217) | |
| 500-614, gnl|bosTau2|chr2 (5108221-5108335) | |
| 500-614, gnl|canFam2|chr36 (31915379-31915550) | |
| 500-614, gnl|danRer3|chr9 (13529448-13529621) | |
| 500-614, gnl|echTel1|scaffold_319278 (116532-116369) | |
| 500-614, gnl|galGal2|chr7 (1280671-1280498) | |
| 500-614, gnl|hg17|chr2 (187365835-187366004) | |
| 500-614, gnl|Hg17|chr2 (187365836-187365950) | |
| 500-614, gnl|loxAfr1|scaffold_41194 (9221-9385) | |
| 500-614, gnl|mm7|chr2 (83645484-83645647) | |
| 500-614, gnl|Mm7|chr2 (83645485-83645599) | |
| 500-614, gnl|monDom2|scaffold_2 (91222053-91222218) | |
| 500-614, gnl|panTro1|chr13 (77199539-77199708) | |
| 500-614, gnl|rheMac2|chr12 (50289712-50289881) | |
| 500-614, gnl|rn3|chr3 (66924139-66924302) | |
| 500-614, gnl|xenTro1|scaffold_48 (2499080-2498937) | |
| 615-724, gnl|bosTau2|chr2 (5108436-5108545) | |
| 615-724, gnl|canFam2|chr36 (31915597-31915725) | |
| 615-724, gnl|danRer3|chr9 (13529690-13529815) | |
| 615-724, gnl|galGal2|chr7 (1280469-1280343) | |
| 615-724, gnl|hg17|chr2 (187366051-187366179) | |
| 615-724, gnl|Hg17|chr2 (187366053-187366162) | |
| 615-724, gnl|loxAfr1|scaffold_41194 (9431-9559) | |
| 615-724, gnl|mm7|chr2 (83645692-83645820) | |
| 615-724, gnl|Mm7|chr2 (83645694-83645803) | |
| 615-724, gnl|monDom2|scaffold_2 (91222264-91222392) | |
| 615-724, gnl|oryCun1|scaffold_154988 (4396-4269) | |
| 615-724, gnl|panTro1|chr13 (77199755-77199883) | |
| 615-724, gnl|rheMac2|chr12 (50289928-50290056) | |
| 615-724, gnl|rn3|chr3 (66924348-66924476) | |
| 615-724, gnl|xenTro1|scaffold_48 (2498875-2498747) | |
| 808-1640, gnl|bosTau2|chr2 (5109620-5110464) | |
| 808-1640, gnl|Hg17|chr2 (187367403-187368200) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 241-389, gnl|bosTau2|chr2 (5102174-5102337) | |
| 241-389, gnl|canFam2|chr36 (31908577-31908783) | |
| 241-389, gnl|danRer3|chr9 (13525331-13525518) | |
| 241-389, gnl|dasNov1|scaffold_217862 (898-1104) | |
| 241-389, gnl|echTel1|scaffold_319278 (124274-124067) | |
| 241-389, gnl|fr1|chrUn (320582108-320582301) | |
| 241-389, gnl|galGal2|chr7 (1283133-1282939) | |
| 241-389, gnl|hg17|chr2 (187358968-187359177) | |
| 241-389, gnl|Hg17|chr2 (187358990-187359153) | |
| 241-389, gnl|loxAfr1|scaffold_41194 (1902-2109) | |
| 241-389, gnl|mm7|chr2 (83639777-83639983) | |
| 241-389, gnl|Mm7|chr2 (83639797-83639960) | |
| 241-389, gnl|monDom2|scaffold_2 (91215917-91216124) | |
| 241-389, gnl|oryCun1|scaffold_126082 (5514-5308) | |
| 241-389, gnl|panTro1|chr13 (77192683-77192893) | |
| 241-389, gnl|rheMac2|chr12 (50282906-50283115) | |
| 241-389, gnl|rn3|chr3 (66917302-66917507) | |
| 241-389, gnl|tetNig1|chrUn_random (42086378-42086187) | |
| 241-389, gnl|xenTro1|scaffold_48 (2515403-2515217) | |
| 500-614, gnl|bosTau2|chr2 (5108221-5108335) | |
| 500-614, gnl|canFam2|chr36 (31915379-31915550) | |
| 500-614, gnl|danRer3|chr9 (13529448-13529621) | |
| 500-614, gnl|echTel1|scaffold_319278 (116532-116369) | |
| 500-614, gnl|galGal2|chr7 (1280671-1280498) | |
| 500-614, gnl|hg17|chr2 (187365835-187366004) | |
| 500-614, gnl|Hg17|chr2 (187365836-187365950) | |
| 500-614, gnl|loxAfr1|scaffold_41194 (9221-9385) | |
| 500-614, gnl|mm7|chr2 (83645484-83645647) | |
| 500-614, gnl|Mm7|chr2 (83645485-83645599) | |
| 500-614, gnl|monDom2|scaffold_2 (91222053-91222218) | |
| 500-614, gnl|panTro1|chr13 (77199539-77199708) | |
| 500-614, gnl|rheMac2|chr12 (50289712-50289881) | |
| 500-614, gnl|rn3|chr3 (66924139-66924302) | |
| 500-614, gnl|xenTro1|scaffold_48 (2499080-2498937) | |
| 615-724, gnl|bosTau2|chr2 (5108436-5108545) | |
| 615-724, gnl|canFam2|chr36 (31915597-31915725) | |
| 615-724, gnl|danRer3|chr9 (13529690-13529815) | |
| 615-724, gnl|galGal2|chr7 (1280469-1280343) | |
| 615-724, gnl|hg17|chr2 (187366051-187366179) | |
| 615-724, gnl|Hg17|chr2 (187366053-187366162) | |
| 615-724, gnl|loxAfr1|scaffold_41194 (9431-9559) | |
| 615-724, gnl|mm7|chr2 (83645692-83645820) | |
| 615-724, gnl|Mm7|chr2 (83645694-83645803) | |
| 615-724, gnl|monDom2|scaffold_2 (91222264-91222392) | |
| 615-724, gnl|oryCun1|scaffold_154988 (4396-4269) | |
| 615-724, gnl|panTro1|chr13 (77199755-77199883) | |
| 615-724, gnl|rheMac2|chr12 (50289928-50290056) | |
| 615-724, gnl|rn3|chr3 (66924348-66924476) | |
| 615-724, gnl|xenTro1|scaffold_48 (2498875-2498747) | |
| 808-1640, gnl|bosTau2|chr2 (5109620-5110464) | |
| 808-1640, gnl|Hg17|chr2 (187367403-187368200) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| kid (0.518941) | |
| amn (0.417711) | |
| fat (0.294855) | |
| liv (0.292569) | |
| spl (0.286369) | |
| jca (0.22792) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ton (0.1755) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eje (0.0988338) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.518941) | |
| amn (0.417711) | |
| fat (0.294855) | |
| liv (0.292569) | |
| spl (0.286369) | |
| jca (0.22792) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ton (0.1755) | |
| eli (0.151814) | |
| lun (0.150489) | |
| bfe (0.149858) | |
| lin (0.145603) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| tra (0.123092) | |
| eje (0.0988338) |