Non-Coding RNA Search

Ss1.1-Pig4-TMW8023O21.3

Sequence:


               
               AAGGGGTAGAGTTTCTCATTCGGATGAAAACTCCTTCAACCAGTGGTGTGCAACTGAAGA
TACTCTCTCTCTCTTTTTTAAAAAAAAAAAAAAGAAAAGGCAAAAAAGAATTCTAGACAC
CACAGAACTGAAGTGTGTTTTTCTCCTCTTTGGTGGCCTACTTTAAGTAGTTGGGATGTT
TTGGACCTGGAGATAACACCGCTTACCTATCCTTACCAGGGAATGTTACCAGTTGAAAAT
AATAGAACTGAAGTTTTCTATGCTTTGCTTAGATTTTCATTTGAGTAGTCGCTCAAAATT
CTGCCTTGCTTAAGTTCTAACCCTGCCTCCCAGAGTTCAGTTTTGGACCTTGCACACCTC
AGACCTTCGAAGTGCATTTGCTCGCTAATTCAGAGGACACGTGGTCTGACTGCAGCAAAG
GACAGTCCTGTATGTTTCTGCAGGAATGAGAAAATTTTACGCTGCATCAAGTCGAGAGCA
AGGCTCAACAGTGGCTGCTGCATTAGGTTTCTTGAAAGTATCGGGAAACAAACTTTTGAA
ACAGAAGAAAATTTTTGCACCTGTGTTTTGGGTACCAGATACCTGGGTTCTTTCTCATGT
ATTAGATAAATGATTCTGATCACTGTAACAAAGGAAATTAAAAAAAAAATTGTTTTCCCC
ACAGTCTCCTCCTAGGAGAGAAACTCATGTCATTGAAATACTTAGCTCACTTTTCTTTAA
AACTTGTTACCAGTTGCCACATACTTTTTTATTCTGAGCTATCGAGATCCTTTCAGAATT
GCTGTCCTGTTGACCGTGAGTGACCCTAAGGCACTGGCGGACTGTCCACTGGATGTGGCG
TCATGACTTGTGTCGTTAAAACCTTCTTCATCTCCAGTATTCAGATGCCAAGTGTCAGCT
GTGGTACTTTCTTCACCTAGGATATTAATTCATAATTGTTTCTTTTTGTTGAAAGTTGAT
ACCCTCCCCATCGGTTTAAACTTCCATGTTATTTTTACTTCACATGCCCAGTAGTCCTAT
CTTCCAAAGCCACTGGACCACTTGAGTACATAAGTGCCACTGTTTAATGAAATATGTATA
TTCAGGTCTGTAAACCTAACTGTGTGACTTGGAGTGCTTCCTGCAGACGATTCTGACTGT
TGAGTATTTACATGGACCATGGTGATATCCAAAAGAGAAGTGCTTTTATATTTATAGATT
ATTTCATTGAACTATATGAAATGGGTATCAATAAATGTATTTACTCCAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGGTAGAGTTTCTCATTCGGATGAAAACTCCTTCAACCAGTGGTGTGCAACTGAAGA
TACTCTCTCTCTCTTTTTTAAAAAAAAAAAAAAGAAAAGGCAAAAAAGAATTCTAGACAC
CACAGAACTGAAGTGTGTTTTTCTCCTCTTTGGTGGCCTACTTTAAGTAGTTGGGATGTT
TTGGACCTGGAGATAACACCGCTTACCTATCCTTACCAGGGAATGTTACCAGTTGAAAAT
AATAGAACTGAAGTTTTCTATGCTTTGCTTAGATTTTCATTTGAGTAGTCGCTCAAAATT
CTGCCTTGCTTAAGTTCTAACCCTGCCTCCCAGAGTTCAGTTTTGGACCTTGCACACCTC
AGACCTTCGAAGTGCATTTGCTCGCTAATTCAGAGGACACGTGGTCTGACTGCAGCAAAG
GACAGTCCTGTATGTTTCTGCAGGAATGAGAAAATTTTACGCTGCATCAAGTCGAGAGCA
AGGCTCAACAGTGGCTGCTGCATTAGGTTTCTTGAAAGTATCGGGAAACAAACTTTTGAA
ACAGAAGAAAATTTTTGCACCTGTGTTTTGGGTACCAGATACCTGGGTTCTTTCTCATGT
ATTAGATAAATGATTCTGATCACTGTAACAAAGGAAATTAAAAAAAAAATTGTTTTCCCC
ACAGTCTCCTCCTAGGAGAGAAACTCATGTCATTGAAATACTTAGCTCACTTTTCTTTAA
AACTTGTTACCAGTTGCCACATACTTTTTTATTCTGAGCTATCGAGATCCTTTCAGAATT
GCTGTCCTGTTGACCGTGAGTGACCCTAAGGCACTGGCGGACTGTCCACTGGATGTGGCG
TCATGACTTGTGTCGTTAAAACCTTCTTCATCTCCAGTATTCAGATGCCAAGTGTCAGCT
GTGGTACTTTCTTCACCTAGGATATTAATTCATAATTGTTTCTTTTTGTTGAAAGTTGAT
ACCCTCCCCATCGGTTTAAACTTCCATGTTATTTTTACTTCACATGCCCAGTAGTCCTAT
CTTCCAAAGCCACTGGACCACTTGAGTACATAAGTGCCACTGTTTAATGAAATATGTATA
TTCAGGTCTGTAAACCTAACTGTGTGACTTGGAGTGCTTCCTGCAGACGATTCTGACTGT
TGAGTATTTACATGGACCATGGTGATATCCAAAAGAGAAGTGCTTTTATATTTATAGATT
ATTTCATTGAACTATATGAAATGGGTATCAATAAATGTATTTACTCCAGAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-642, gnl|bosTau2|chr23 (20544026-20543385)
               

               
               1-642, gnl|Hg17|chr1 (38974197-38973568)
               

               
               1-642, gnl|Mm7|chr4 (123380444-123381029)
               


               
               970-1274, gnl|bosTau2|chr27 (9203806-9204112)
               

               
               970-1274, gnl|Hg17|chr1 (38973246-38972963)
               

               
               970-1274, gnl|Mm7|chr4 (123381366-123381639)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-642, gnl|bosTau2|chr23 (20544026-20543385)
               

               
               1-642, gnl|Hg17|chr1 (38974197-38973568)
               

               
               1-642, gnl|Mm7|chr4 (123380444-123381029)
               


               
               970-1274, gnl|bosTau2|chr27 (9203806-9204112)
               

               
               970-1274, gnl|Hg17|chr1 (38973246-38972963)
               

               
               970-1274, gnl|Mm7|chr4 (123381366-123381639)

Expressed library(ies): 23 entry(ies)

More info

Expressed library(ies): 23 entry(ies)

Help | Less info


               
               rec (0.519211)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.519211)
               

               
               sin (0.349895)
               

               
               bfe (0.299715)
               

               
               lin (0.291206)
               

               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               lyg (0.133103)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-642, gnl\|bosTau2\|chr23 (20544026-20543385)
	1-642, gnl\|Hg17\|chr1 (38974197-38973568)
	1-642, gnl\|Mm7\|chr4 (123380444-123381029)

	970-1274, gnl\|bosTau2\|chr27 (9203806-9204112)
	970-1274, gnl\|Hg17\|chr1 (38973246-38972963)
	970-1274, gnl\|Mm7\|chr4 (123381366-123381639)

	rec (0.519211)
	sin (0.349895)
	bfe (0.299715)
	lin (0.291206)
	spl (0.286369)
	thg (0.253582)
	mgp (0.230681)
	tes (0.207814)
	gul (0.177588)
	nco (0.161734)
	mga (0.160205)
	fco (0.157208)
	lun (0.150489)
	isp (0.150376)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	csk (0.140746)
	lyg (0.133103)
	kid (0.129735)
	bla (0.124347)
	jej (0.0989218)
	ldo (0.0970026)