Non-Coding RNA Search

Ss1.1-Pig4-TMW8023P01.3.5

Sequence:


               
               ACTCTGGGGTGGAGTGGGGTCCTCACTGGTTAGCATTCCATTTTCCTAAGGAGAATGAGC
CCTGCGACTGGGGGAACAGCCGGGAGGCTTGTGTATCCCCTTGTGTGTTCCTTATCTAGG
CAAGCAAACGCTTCACTTTTCTTCATCCTCTAAATTATAGACGGAGGATTTCTCAGCCTT
TTTAAGTCAAGGTTGGGACTGCTGCTCTGCCTGTGACTTCTGCTAAGAGCTGCTGATGCA
CCAGCCTGACCAGGGGACCATGGCTTCTCTGGCTTTATTTTCCCTTTCAGTTGGTTTGTT
TTCTAGAAATCTAATCAGATGCTTTGGGGAATGCAATGTGTGATTTGCTAGCTCTCTCGC
CACTTTAACTCACTGTGAGAATAAATATGCATGCTTTCTGTAATTAACTGGTGCTTTGAA
AACCTTTTTTTAAGGAAGACAAATCTCAACCAAAGTTCTGCTCATCCGGACAAGCTCACC
CTCGAGTTAATTTTAGCACAGCTCATTCTTCAGTGCCTCATTACTGAACGAACATCCATC
ATCCCAGTAAGGCTTCCAGATAGCACTGTTTTGCTAAAAGATTTATTCTTATTGTTTTCC
AAAAGCGAATGGCTTTCATGTAAGATTAAACAAACTAGGTGCTTATAAATAATTTATTAC
AGTTTACTCTGTTGCATTTCTATGAAACTGAAATGCATGCCCTCCAGGGAAAGGCAGACT
GTGAATCAGGTTAAAAAGCAAACAAAAAGACCCGATAATAAGCAATATGAAACTGCTCTC
TTTCACAACGAGAAGTTCCTAAGTGATTCAGAAGAGGAGAAGAAAATTTTGCTCTCAAAA
CTTTAAGAAAAAAGGAAAGAACTAGCATGAAATGTGTAGGACTAGCAACAGAGAAAGTGC
TATGAGACTTGCTTCTCAGATCTGTGAACTCTCACAAAGTCACAAGAGCGAGTGGAGAAA
ATAAGTTAGGGACTGCAATGACTGTGGGATTTCCAATCTGAAGGGAAAAGCATTCCCCAG
AGTTCTCCATGCGTATGAGTGCTCTGTGAGATGTTCCTAGGTGTTTTGTAAAAAAAGTGT
TGCTGGTAACATCAATTTGCACATGGACCCTCTTTCCTAGAAATTCACAGTGCACTTGTA
AGGGCTTCAGGGTCTGCCAGTACCAAGCCTGTTTAACCCAGCATTTCCCAATCCATGTGA
CCCCAGGGCCTTTTTCTCCTTGGGGACACCTATGGACCTCTCATTAGGTTCATAGAAGAC
ATTTTGGGAAACACTATGTCAGGTGGTTCTTTAAGGGGACAAAATAACTCCCAGATGGCA
CGGAGGCAGAATTTGCATACATTTTGTAAATCAAATGTTGCATTTAATGGATGTATATTT
CCTCTCCTAGAGACGATAAGCACAGAAATCGATAATACAGTTGGTCAGAGCTCTTTCCTT
AATGATTATGGGTTCTTTTCACTGAAAGTAGCAAAATAAACACTAGGATTAATTGAGGTA
AAAAATTAAGATTGTAATTCAGATCTGGAAGAAATTATTGCACAATTGAATGCAGCTTTT
TATCCACAGGTAGTTCTAGCGTTTAGAAATGATAGGACTTACCACTGAGGTTTATAAGAC
TTAATTTGGCTGTAAATCTGTTTTTTAAAACACTCTTTGTAGGAACTTGAGACTTGGCAT
CTGGCATTTTAGTTTAATACAAACTAATGATTGCATTTGAAAGAGACTTTTGACTCTACT
GGTAAACATCTAAACTCTGAAATGCCTTGATGGAAGGTGTTAAACTATTTGCCTGTTGTA
CAAAGAAATGTTAGATTGTTGTAGAAAGATGTACTATAAAGTACCGGAAAAATGACATGG
TGTGACGTCACGAGTGAAACTTCTATGGAAACTTTTTTTATGCCTGTTAATATATTGTAA
GACACACAGAAGTGTAGTTTTGTTTTAATAAACCGAAAAGTGAATGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCTGGGGTGGAGTGGGGTCCTCACTGGTTAGCATTCCATTTTCCTAAGGAGAATGAGC
CCTGCGACTGGGGGAACAGCCGGGAGGCTTGTGTATCCCCTTGTGTGTTCCTTATCTAGG
CAAGCAAACGCTTCACTTTTCTTCATCCTCTAAATTATAGACGGAGGATTTCTCAGCCTT
TTTAAGTCAAGGTTGGGACTGCTGCTCTGCCTGTGACTTCTGCTAAGAGCTGCTGATGCA
CCAGCCTGACCAGGGGACCATGGCTTCTCTGGCTTTATTTTCCCTTTCAGTTGGTTTGTT
TTCTAGAAATCTAATCAGATGCTTTGGGGAATGCAATGTGTGATTTGCTAGCTCTCTCGC
CACTTTAACTCACTGTGAGAATAAATATGCATGCTTTCTGTAATTAACTGGTGCTTTGAA
AACCTTTTTTTAAGGAAGACAAATCTCAACCAAAGTTCTGCTCATCCGGACAAGCTCACC
CTCGAGTTAATTTTAGCACAGCTCATTCTTCAGTGCCTCATTACTGAACGAACATCCATC
ATCCCAGTAAGGCTTCCAGATAGCACTGTTTTGCTAAAAGATTTATTCTTATTGTTTTCC
AAAAGCGAATGGCTTTCATGTAAGATTAAACAAACTAGGTGCTTATAAATAATTTATTAC
AGTTTACTCTGTTGCATTTCTATGAAACTGAAATGCATGCCCTCCAGGGAAAGGCAGACT
GTGAATCAGGTTAAAAAGCAAACAAAAAGACCCGATAATAAGCAATATGAAACTGCTCTC
TTTCACAACGAGAAGTTCCTAAGTGATTCAGAAGAGGAGAAGAAAATTTTGCTCTCAAAA
CTTTAAGAAAAAAGGAAAGAACTAGCATGAAATGTGTAGGACTAGCAACAGAGAAAGTGC
TATGAGACTTGCTTCTCAGATCTGTGAACTCTCACAAAGTCACAAGAGCGAGTGGAGAAA
ATAAGTTAGGGACTGCAATGACTGTGGGATTTCCAATCTGAAGGGAAAAGCATTCCCCAG
AGTTCTCCATGCGTATGAGTGCTCTGTGAGATGTTCCTAGGTGTTTTGTAAAAAAAGTGT
TGCTGGTAACATCAATTTGCACATGGACCCTCTTTCCTAGAAATTCACAGTGCACTTGTA
AGGGCTTCAGGGTCTGCCAGTACCAAGCCTGTTTAACCCAGCATTTCCCAATCCATGTGA
CCCCAGGGCCTTTTTCTCCTTGGGGACACCTATGGACCTCTCATTAGGTTCATAGAAGAC
ATTTTGGGAAACACTATGTCAGGTGGTTCTTTAAGGGGACAAAATAACTCCCAGATGGCA
CGGAGGCAGAATTTGCATACATTTTGTAAATCAAATGTTGCATTTAATGGATGTATATTT
CCTCTCCTAGAGACGATAAGCACAGAAATCGATAATACAGTTGGTCAGAGCTCTTTCCTT
AATGATTATGGGTTCTTTTCACTGAAAGTAGCAAAATAAACACTAGGATTAATTGAGGTA
AAAAATTAAGATTGTAATTCAGATCTGGAAGAAATTATTGCACAATTGAATGCAGCTTTT
TATCCACAGGTAGTTCTAGCGTTTAGAAATGATAGGACTTACCACTGAGGTTTATAAGAC
TTAATTTGGCTGTAAATCTGTTTTTTAAAACACTCTTTGTAGGAACTTGAGACTTGGCAT
CTGGCATTTTAGTTTAATACAAACTAATGATTGCATTTGAAAGAGACTTTTGACTCTACT
GGTAAACATCTAAACTCTGAAATGCCTTGATGGAAGGTGTTAAACTATTTGCCTGTTGTA
CAAAGAAATGTTAGATTGTTGTAGAAAGATGTACTATAAAGTACCGGAAAAATGACATGG
TGTGACGTCACGAGTGAAACTTCTATGGAAACTTTTTTTATGCCTGTTAATATATTGTAA
GACACACAGAAGTGTAGTTTTGTTTTAATAAACCGAAAAGTGAATGTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               624-743, + strand, RNAz p=0.798042
               

               
               1169-1282, - strand, RNAz p=0.907324
               

               
               1682-1796, - strand, RNAz p=0.966903

Predicted RNA structure(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-743, + strand, RNAz p=0.798042
               

               
               1169-1282, - strand, RNAz p=0.907324
               

               
               1682-1796, - strand, RNAz p=0.966903

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               1682-1796, BB875232 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB875232.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, BB877838 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB877838.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, DB545737 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB545737.1|), blast E-value=9e-27, identity=89.66% 
               

               
               1682-1796, DKFZp470I021_r1 470 (synonym (emb|CR544035.1|), blast E-value=9e-27, 
identity=89.66% 
               

               
               1682-1796, ILLUMIGEN_MCQ_2215 Katze_MMLG Macaca mulatta cDNA 5', mRNA sequence 
(gb|CK231427.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, n7195 Human Fetal Cochlea cDNA Library Homo sapiens cDNA clone 
(gb|DV460950.1|), blast E-value=9e-27, identity=89.66%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               1682-1796, BB875232 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB875232.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, BB877838 Sugano cDNA library, adult liver Macaca fascicularis cDNA 
(dbj|BB877838.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, DB545737 RIKEN full-length enriched human cDNA library, hippocampus 
(dbj|DB545737.1|), blast E-value=9e-27, identity=89.66% 
               

               
               1682-1796, DKFZp470I021_r1 470 (synonym (emb|CR544035.1|), blast E-value=9e-27, 
identity=89.66% 
               

               
               1682-1796, ILLUMIGEN_MCQ_2215 Katze_MMLG Macaca mulatta cDNA 5', mRNA sequence 
(gb|CK231427.1|), blast E-value=4e-29, identity=90.52% 
               

               
               1682-1796, n7195 Human Fetal Cochlea cDNA Library Homo sapiens cDNA clone 
(gb|DV460950.1|), blast E-value=9e-27, identity=89.66%

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_020918, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_020918, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-810, gnl|bosTau2|chr26 (20985476-20984645)
               

               
               2-810, gnl|Hg17|chr10 (113901641-113900800)
               

               
               2-810, gnl|Mm7|chr19 (54983760-54982969)
               


               
               850-1968, gnl|bosTau2|chr26 (20984631-20983500)
               

               
               850-1968, gnl|Hg17|chr10 (113900771-113899613)
               

               
               850-1968, gnl|Mm7|chr19 (54982936-54981865)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-810, gnl|bosTau2|chr26 (20985476-20984645)
               

               
               2-810, gnl|Hg17|chr10 (113901641-113900800)
               

               
               2-810, gnl|Mm7|chr19 (54983760-54982969)
               


               
               850-1968, gnl|bosTau2|chr26 (20984631-20983500)
               

               
               850-1968, gnl|Hg17|chr10 (113900771-113899613)
               

               
               850-1968, gnl|Mm7|chr19 (54982936-54981865)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               mga (0.801025)
               

               
               fco (0.628832)
               

               
               cbr (0.511902)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.801025)
               

               
               fco (0.628832)
               

               
               cbr (0.511902)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               fce (0.271592)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               lun (0.150489)
               

               
               kid (0.129735)
               

               
               ret (0.128733)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	624-743, + strand, RNAz p=0.798042
	1169-1282, - strand, RNAz p=0.907324
	1682-1796, - strand, RNAz p=0.966903

	1682-1796, BB875232 Sugano cDNA library, adult liver Macaca fascicularis cDNA (dbj\|BB875232.1\|), blast E-value=4e-29, identity=90.52%
	1682-1796, BB877838 Sugano cDNA library, adult liver Macaca fascicularis cDNA (dbj\|BB877838.1\|), blast E-value=4e-29, identity=90.52%
	1682-1796, DB545737 RIKEN full-length enriched human cDNA library, hippocampus (dbj\|DB545737.1\|), blast E-value=9e-27, identity=89.66%
	1682-1796, DKFZp470I021_r1 470 (synonym (emb\|CR544035.1\|), blast E-value=9e-27, identity=89.66%
	1682-1796, ILLUMIGEN_MCQ_2215 Katze_MMLG Macaca mulatta cDNA 5', mRNA sequence (gb\|CK231427.1\|), blast E-value=4e-29, identity=90.52%
	1682-1796, n7195 Human Fetal Cochlea cDNA Library Homo sapiens cDNA clone (gb\|DV460950.1\|), blast E-value=9e-27, identity=89.66%

	2-810, gnl\|bosTau2\|chr26 (20985476-20984645)
	2-810, gnl\|Hg17\|chr10 (113901641-113900800)
	2-810, gnl\|Mm7\|chr19 (54983760-54982969)

	850-1968, gnl\|bosTau2\|chr26 (20984631-20983500)
	850-1968, gnl\|Hg17\|chr10 (113900771-113899613)
	850-1968, gnl\|Mm7\|chr19 (54982936-54981865)

	mga (0.801025)
	fco (0.628832)
	cbr (0.511902)
	mgm (0.360685)
	vin (0.332557)
	fce (0.271592)
	tra (0.246184)
	mgp (0.230681)
	sin (0.174948)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	lun (0.150489)
	kid (0.129735)
	ret (0.128733)
	sug (0.127291)
	spc (0.113366)