Ss1.1-Pig4-TMW8023P10.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCGGCGCGGGCTCTCACGTGGAGGCGGGGAATTTTGGCCCACGGGGATGATCACTAAG ACTCACAAAGGAGACCTGGGCCTCGGGCTCCCAGAGAAGAAGAAGAAGAAAAAGAAGGTC GTCCCAGAGCCTGAGACTCCATACTTGGTTTTAAACAGTGACAGTTATTTCACAGAGGCT TGTCCCACAAAAGCCATATCATCCTTGAAGAATGTGGTCCACGGGCAGGCACTAGAAGTG CCTCCAGTGAAGAAAAAGAAGAAAAAGAAGGGTCACAGTGCTGTCTGCGAGGAGCCCCTA AAACCTGAGCCTAAGTTACATGCTGGCCGCACCGAGTCGTCCCCTGGCCCCAGGAAGCAG GTGCTGCTTCCATCTGAGTCCCTCCGTGGGGAGAGGAAGAAGAGGAAGTCGACGTCCCCT TGCGCAAGGGTGAGGACCTCCCCAGACCCCAGGCAGGGCGAGGAGGTGACCCGAGTTGGC AAGAAGCTCAAAAAACACAAGAAGGAGAAAAAGGCCCAGGAAGCCACAGCCTTCTCAGCC GAGGACCCTTGGCTCTGCGAGGCCGGCGATGCTTCGTACATGTGCTCCGTTGGGAAGGAT GGTGAGGAGCGGGCCGCGCTGGGGCAGAAGCGGAAGCAGGGGAGCCCCGAGGAGCACAAA GTGAAGACGAAGAAGAGAAAGAAAATCCGGCAGAAGGGAGATTCTCCCCTGGAGCACCCC AAGCTTTCCAGGTCTGAGGAGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCGGCGCGGGCTCTCACGTGGAGGCGGGGAATTTTGGCCCACGGGGATGATCACTAAG ACTCACAAAGGAGACCTGGGCCTCGGGCTCCCAGAGAAGAAGAAGAAGAAAAAGAAGGTC GTCCCAGAGCCTGAGACTCCATACTTGGTTTTAAACAGTGACAGTTATTTCACAGAGGCT TGTCCCACAAAAGCCATATCATCCTTGAAGAATGTGGTCCACGGGCAGGCACTAGAAGTG CCTCCAGTGAAGAAAAAGAAGAAAAAGAAGGGTCACAGTGCTGTCTGCGAGGAGCCCCTA AAACCTGAGCCTAAGTTACATGCTGGCCGCACCGAGTCGTCCCCTGGCCCCAGGAAGCAG GTGCTGCTTCCATCTGAGTCCCTCCGTGGGGAGAGGAAGAAGAGGAAGTCGACGTCCCCT TGCGCAAGGGTGAGGACCTCCCCAGACCCCAGGCAGGGCGAGGAGGTGACCCGAGTTGGC AAGAAGCTCAAAAAACACAAGAAGGAGAAAAAGGCCCAGGAAGCCACAGCCTTCTCAGCC GAGGACCCTTGGCTCTGCGAGGCCGGCGATGCTTCGTACATGTGCTCCGTTGGGAAGGAT GGTGAGGAGCGGGCCGCGCTGGGGCAGAAGCGGAAGCAGGGGAGCCCCGAGGAGCACAAA GTGAAGACGAAGAAGAGAAAGAAAATCCGGCAGAAGGGAGATTCTCCCCTGGAGCACCCC AAGCTTTCCAGGTCTGAGGAGAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 376-501, - strand, RNAz p=0.992314 | |
| 399-491, - strand, RNAz p=0.995729 | |
| 401-581, - strand, RNAz p=0.875858 | |
| 569-685, - strand, RNAz p=0.999154 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 376-501, - strand, RNAz p=0.992314 | |
| 399-491, - strand, RNAz p=0.995729 | |
| 401-581, - strand, RNAz p=0.875858 | |
| 569-685, - strand, RNAz p=0.999154 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 46-744, gnl|bosTau2|chr25 (16990686-16989994) | |
| 46-744, gnl|canFam2|chr5 (45886330-45885840) | |
| 46-744, gnl|canFam2|chr5 (45886313-45885764) | |
| 46-744, gnl|canFam2|chr5 (45886313-45885768) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6231-6725) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6231-6801) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6230-6797) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45373) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45449) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45445) | |
| 46-744, gnl|Hg17|chr16 (19633861-19633148) | |
| 46-744, gnl|hg17|chr2 (51648930-51649468) | |
| 46-744, gnl|hg17|chr6 (73752798-73753343) | |
| 46-744, gnl|hg17|chr8 (127153995-127154485) | |
| 46-744, gnl|mm7|chr7 (114775913-114775416) | |
| 46-744, gnl|mm7|chr7 (114775914-114775340) | |
| 46-744, gnl|mm7|chr7 (114775913-114775344) | |
| 46-744, gnl|Mm7|chr7 (114775914-114775192) | |
| 46-744, gnl|monDom2|scaffold_19 (39852634-39852120) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61651) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61575) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61579) | |
| 46-744, gnl|panTro1|chr12 (53763104-53763643) | |
| 46-744, gnl|panTro1|chr5 (74900953-74901499) | |
| 46-744, gnl|panTro1|chr7 (129885016-129885509) | |
| 46-744, gnl|rheMac2|chr13 (51689209-51689768) | |
| 46-744, gnl|rheMac2|chr4 (69226684-69227185) | |
| 46-744, gnl|rheMac2|chr8 (128684697-128685184) | |
| 46-744, gnl|rn3|chr2 (66157431-66156923) | |
| 46-744, gnl|rn3|chr2 (66157405-66156849) | |
| 46-744, gnl|rn3|chr2 (66157406-66156853) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 46-744, gnl|bosTau2|chr25 (16990686-16989994) | |
| 46-744, gnl|canFam2|chr5 (45886330-45885840) | |
| 46-744, gnl|canFam2|chr5 (45886313-45885764) | |
| 46-744, gnl|canFam2|chr5 (45886313-45885768) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6231-6725) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6231-6801) | |
| 46-744, gnl|dasNov1|scaffold_55897 (6230-6797) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45373) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45449) | |
| 46-744, gnl|echTel1|scaffold_284048 (44899-45445) | |
| 46-744, gnl|Hg17|chr16 (19633861-19633148) | |
| 46-744, gnl|hg17|chr2 (51648930-51649468) | |
| 46-744, gnl|hg17|chr6 (73752798-73753343) | |
| 46-744, gnl|hg17|chr8 (127153995-127154485) | |
| 46-744, gnl|mm7|chr7 (114775913-114775416) | |
| 46-744, gnl|mm7|chr7 (114775914-114775340) | |
| 46-744, gnl|mm7|chr7 (114775913-114775344) | |
| 46-744, gnl|Mm7|chr7 (114775914-114775192) | |
| 46-744, gnl|monDom2|scaffold_19 (39852634-39852120) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61651) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61575) | |
| 46-744, gnl|oryCun1|scaffold_173268 (62128-61579) | |
| 46-744, gnl|panTro1|chr12 (53763104-53763643) | |
| 46-744, gnl|panTro1|chr5 (74900953-74901499) | |
| 46-744, gnl|panTro1|chr7 (129885016-129885509) | |
| 46-744, gnl|rheMac2|chr13 (51689209-51689768) | |
| 46-744, gnl|rheMac2|chr4 (69226684-69227185) | |
| 46-744, gnl|rheMac2|chr8 (128684697-128685184) | |
| 46-744, gnl|rn3|chr2 (66157431-66156923) | |
| 46-744, gnl|rn3|chr2 (66157405-66156849) | |
| 46-744, gnl|rn3|chr2 (66157406-66156853) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nmm (0.132802) |