Non-Coding RNA Search

Ss1.1-Pig4-TMW8023P17.3

Sequence:


               
               GGAGTGTTCCTCCCACACCACTCCCAGCGGCCTCCTATGGCGGCCCCACGCCGGCCTCCT
ATGCTACGGCCAGCACCCCCGCCGGCCCTGCCTTCCCTGTGCAAGTGAAGGTGGCACAAC
CAGTGAGAGGCTGTGGCCCCCCCAGGCGGGGGGCCCCTCAGGCCTCGGGGCCCCTCCCCG
GCCCCCACTTTCCTCTCCCAGGCCGAGGTGAAGTCTGGGGGGCTGGCTACAGGAGCCACC
GTGAGCCAGGGCCAGGGGGTAAAGAGGAGGCTGCCGGAGTCTCCGGCCCTCCGGGAGGAA
GAGGAGGCGGGTACGGGCCCCAGGTCCCCCTGAGCCAGCCTCCCGAGGAGGAACTTGAGA
GGCTGACCAAGAAGCTGGTGCAGGACATGAACCACCCGCCCAGTGGGGAGTACTTCGGCC
GGTGTGGTGGCTGCGGAGAAGATGTGGTTGGGGATGGGGCCGGGGTTGTGGCCCTGGACC
GTGTCTTTCACGTTGGCTGCTTTGTCTGTTCTACATGCCGGGCCCATCTCCGGGGCCAGC
ATTTCTATGCCGTGGAGAGGAGAGCGTATTGTGAGAGCTGCTATGTGGCCACCCTGGAGA
AGTGCTCCACCTGTTCCCAGCCCATCCTGGACCGGATTCTGCGGGCCATGGGGAAGGCCT
ATCACCCTGGCTGCTTCACTTGTGTGGTGTGCCACCGCGGCCTCGATGGCATCCCCTTCA
CTGTGGATGCCACCAGCCAGATCCACTGCATTGAGGACTTCCACAGGAAGTTTGCCCCAC
GATGCTCAGTGTGTGGTGGGGCCATCATGCCTGAGCCCGGTCAGGAGGAGACTGTGCGAA
TTGTAGCTCTGGACCGCAGTTTTCACGTTGGCTGTTACAAGTGCGAGGAGTGCGGGCTGC
TGCTCTCCTCTGAGGGTGAATGTCAGGGTTGCTACCCGCTGGATGGGCACATCTTGTGCA
AGGCCTGCAGTGCCTGGCGCATCCAAGAGCTCTCAGCCACCGTCACCACCGACTGCTGAG
TCTTTCCCAGAAGCACCTACTCTGTTCTCCCTTCCCATCAACCACCCTCCCTGACATCTA
CCTTTATAATGTTGTCACCAAATGCCATCTTCTCTTCCTCTAATCATGAAATAATAATCC
CTCAAGAGTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGTGTTCCTCCCACACCACTCCCAGCGGCCTCCTATGGCGGCCCCACGCCGGCCTCCT
ATGCTACGGCCAGCACCCCCGCCGGCCCTGCCTTCCCTGTGCAAGTGAAGGTGGCACAAC
CAGTGAGAGGCTGTGGCCCCCCCAGGCGGGGGGCCCCTCAGGCCTCGGGGCCCCTCCCCG
GCCCCCACTTTCCTCTCCCAGGCCGAGGTGAAGTCTGGGGGGCTGGCTACAGGAGCCACC
GTGAGCCAGGGCCAGGGGGTAAAGAGGAGGCTGCCGGAGTCTCCGGCCCTCCGGGAGGAA
GAGGAGGCGGGTACGGGCCCCAGGTCCCCCTGAGCCAGCCTCCCGAGGAGGAACTTGAGA
GGCTGACCAAGAAGCTGGTGCAGGACATGAACCACCCGCCCAGTGGGGAGTACTTCGGCC
GGTGTGGTGGCTGCGGAGAAGATGTGGTTGGGGATGGGGCCGGGGTTGTGGCCCTGGACC
GTGTCTTTCACGTTGGCTGCTTTGTCTGTTCTACATGCCGGGCCCATCTCCGGGGCCAGC
ATTTCTATGCCGTGGAGAGGAGAGCGTATTGTGAGAGCTGCTATGTGGCCACCCTGGAGA
AGTGCTCCACCTGTTCCCAGCCCATCCTGGACCGGATTCTGCGGGCCATGGGGAAGGCCT
ATCACCCTGGCTGCTTCACTTGTGTGGTGTGCCACCGCGGCCTCGATGGCATCCCCTTCA
CTGTGGATGCCACCAGCCAGATCCACTGCATTGAGGACTTCCACAGGAAGTTTGCCCCAC
GATGCTCAGTGTGTGGTGGGGCCATCATGCCTGAGCCCGGTCAGGAGGAGACTGTGCGAA
TTGTAGCTCTGGACCGCAGTTTTCACGTTGGCTGTTACAAGTGCGAGGAGTGCGGGCTGC
TGCTCTCCTCTGAGGGTGAATGTCAGGGTTGCTACCCGCTGGATGGGCACATCTTGTGCA
AGGCCTGCAGTGCCTGGCGCATCCAAGAGCTCTCAGCCACCGTCACCACCGACTGCTGAG
TCTTTCCCAGAAGCACCTACTCTGTTCTCCCTTCCCATCAACCACCCTCCCTGACATCTA
CCTTTATAATGTTGTCACCAAATGCCATCTTCTCTTCCTCTAATCATGAAATAATAATCC
CTCAAGAGTGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q71V88_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q71V88_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               87-745, - strand, RNAz p=0.966873
               

               
               925-1070, - strand, RNAz p=0.703303

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               87-745, - strand, RNAz p=0.966873
               

               
               925-1070, - strand, RNAz p=0.703303

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               7-336, gnl|bosTau2|chr25 (32198643-32198313)
               

               
               7-336, gnl|Hg17|chr7 (100110822-100111154)
               

               
               7-336, gnl|Mm7|chr5 (136231293-136230956)
               


               
               587-767, gnl|bosTau2|chr25 (32196575-32196395)
               

               
               587-767, gnl|Hg17|chr7 (100113815-100113995)
               

               
               587-767, gnl|Mm7|chr5 (136229100-136228920)
               


               
               886-1152, gnl|bosTau2|chr25 (32195880-32195615)
               

               
               886-1152, gnl|Hg17|chr7 (100115443-100115720)
               

               
               886-1152, gnl|Mm7|chr5 (136228444-136228172)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-336, gnl|bosTau2|chr25 (32198643-32198313)
               

               
               7-336, gnl|Hg17|chr7 (100110822-100111154)
               

               
               7-336, gnl|Mm7|chr5 (136231293-136230956)
               


               
               587-767, gnl|bosTau2|chr25 (32196575-32196395)
               

               
               587-767, gnl|Hg17|chr7 (100113815-100113995)
               

               
               587-767, gnl|Mm7|chr5 (136229100-136228920)
               


               
               886-1152, gnl|bosTau2|chr25 (32195880-32195615)
               

               
               886-1152, gnl|Hg17|chr7 (100115443-100115720)
               

               
               886-1152, gnl|Mm7|chr5 (136228444-136228172)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               eru (0.240096)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	87-745, - strand, RNAz p=0.966873
	925-1070, - strand, RNAz p=0.703303

	7-336, gnl\|bosTau2\|chr25 (32198643-32198313)
	7-336, gnl\|Hg17\|chr7 (100110822-100111154)
	7-336, gnl\|Mm7\|chr5 (136231293-136230956)

	587-767, gnl\|bosTau2\|chr25 (32196575-32196395)
	587-767, gnl\|Hg17\|chr7 (100113815-100113995)
	587-767, gnl\|Mm7\|chr5 (136229100-136228920)

	886-1152, gnl\|bosTau2\|chr25 (32195880-32195615)
	886-1152, gnl\|Hg17\|chr7 (100115443-100115720)
	886-1152, gnl\|Mm7\|chr5 (136228444-136228172)

	eru (0.240096)
	nco (0.161734)
	hyp (0.142837)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	ese (0.126502)
	ebs (0.118301)