Non-Coding RNA Search

Ss1.1-Pig4-TMW8023P19.3

Sequence:


               
               ACAATGCTGGCGGGAGAAGCCTTATGAAAGGCCCTCATTTGCCCAGATCTTGGTGTCCTT
GAACAGGATGTTAGAAGAACGAAAGACCTACGTGAATACCACGCTTTATGAGAAGTTTAC
CTACGCAGGAATTGACTGTTCTGCTGAAGAAGCAGCCTAGGACAGCCCATCTTTTATCTA
TATATATTCTGTCTCCCTTTCACTGGCATGAGAGACCCGTGATACCTGGATGCCAAGCCA
GCCAGCCTCTGCCCAGAGAGGTGACATAGAATATGGACATGTATATAGATTGCTGTCTGT
CTGGGACTTTCTCCATAAGACCTCTGTGTGTGAATCTATAGTACACTCTGACTCTACTAG
GACTGTATATACTGTTTTGAGTAAGAATGTGCTGGACTCAGAATGCCTGTTCGTGGTTTC
ATATGCAATAATATATTTTTCTAAAACATGGACTTTATAGGAAGGTGTGAGAGTACAATT
AATGTAGTGCATAACTCATTGTTAGCCTGGATATTTTTGATATTTACCTATATAATGAAG
GTAGAAGAAAATTTTGTTAAGAAACCTAATGCTGACCCTGACAGCACAGGTGAGAAAAGT
AGGGGAAGTGAATGAGTTCTAACAGGACATGGATTTAAGTTACTTAAAAGTTCACCTAAG
TGGTATCAAAGAGATTCTTCTCTCTCTAAACTTCTTCCCTCACCTGTAGAAGCCATCTCA
ATTTCATTTGGTAATCTGACATCTTTGTCATGTGTTTTCTGAGCCCACAAGTTGGTCCAG
AATGCTAACACTGAAAAACAGACTTAAATCTCATTCCATAGAAGCCTTAGAGCTTATAGA
GAAGTATAAGTTCCATAAATTAATAGGATTTAGTTTTAGTTTCTCTGATAACATTGATGT
GTTTATTAAGAAATTAAAATGGGAATCGTGGAGTTATATTTTGGGAGACATGTGACATTT
ATCCTATCAAATTAACATCCCTACGTGTATTGCACATTGTAAAAAGTTTGTTTTCATCAG
TTATGAGTTTACCATTTATATTGTAGGCACATGTTGCACTGAGATCATACAGTAAGTAAA
TAAATGTCTTGCCTACTCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAATGCTGGCGGGAGAAGCCTTATGAAAGGCCCTCATTTGCCCAGATCTTGGTGTCCTT
GAACAGGATGTTAGAAGAACGAAAGACCTACGTGAATACCACGCTTTATGAGAAGTTTAC
CTACGCAGGAATTGACTGTTCTGCTGAAGAAGCAGCCTAGGACAGCCCATCTTTTATCTA
TATATATTCTGTCTCCCTTTCACTGGCATGAGAGACCCGTGATACCTGGATGCCAAGCCA
GCCAGCCTCTGCCCAGAGAGGTGACATAGAATATGGACATGTATATAGATTGCTGTCTGT
CTGGGACTTTCTCCATAAGACCTCTGTGTGTGAATCTATAGTACACTCTGACTCTACTAG
GACTGTATATACTGTTTTGAGTAAGAATGTGCTGGACTCAGAATGCCTGTTCGTGGTTTC
ATATGCAATAATATATTTTTCTAAAACATGGACTTTATAGGAAGGTGTGAGAGTACAATT
AATGTAGTGCATAACTCATTGTTAGCCTGGATATTTTTGATATTTACCTATATAATGAAG
GTAGAAGAAAATTTTGTTAAGAAACCTAATGCTGACCCTGACAGCACAGGTGAGAAAAGT
AGGGGAAGTGAATGAGTTCTAACAGGACATGGATTTAAGTTACTTAAAAGTTCACCTAAG
TGGTATCAAAGAGATTCTTCTCTCTCTAAACTTCTTCCCTCACCTGTAGAAGCCATCTCA
ATTTCATTTGGTAATCTGACATCTTTGTCATGTGTTTTCTGAGCCCACAAGTTGGTCCAG
AATGCTAACACTGAAAAACAGACTTAAATCTCATTCCATAGAAGCCTTAGAGCTTATAGA
GAAGTATAAGTTCCATAAATTAATAGGATTTAGTTTTAGTTTCTCTGATAACATTGATGT
GTTTATTAAGAAATTAAAATGGGAATCGTGGAGTTATATTTTGGGAGACATGTGACATTT
ATCCTATCAAATTAACATCCCTACGTGTATTGCACATTGTAAAAAGTTTGTTTTCATCAG
TTATGAGTTTACCATTTATATTGTAGGCACATGTTGCACTGAGATCATACAGTAAGTAAA
TAAATGTCTTGCCTACTCAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               84-1099, gnl|bosTau2|chr8 (10396318-10395319)
               

               
               84-1099, gnl|Hg17|chr9 (27219154-27220165)
               

               
               84-1099, gnl|Mm7|chr4 (94266528-94267543)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-1099, gnl|bosTau2|chr8 (10396318-10395319)
               

               
               84-1099, gnl|Hg17|chr9 (27219154-27220165)
               

               
               84-1099, gnl|Mm7|chr4 (94266528-94267543)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               liv (0.585137)
               

               
               kid (0.518941)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.585137)
               

               
               kid (0.518941)
               

               
               amn (0.417711)
               

               
               ret (0.3862)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               mgp (0.230681)
               

               
               cty (0.20816)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fco (0.157208)
               

               
               csk (0.140746)
               

               
               spc (0.113366)

	84-1099, gnl\|bosTau2\|chr8 (10396318-10395319)
	84-1099, gnl\|Hg17\|chr9 (27219154-27220165)
	84-1099, gnl\|Mm7\|chr4 (94266528-94267543)

	liv (0.585137)
	kid (0.518941)
	amn (0.417711)
	ret (0.3862)
	isp (0.300752)
	bfe (0.299715)
	mgp (0.230681)
	cty (0.20816)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	fco (0.157208)
	csk (0.140746)
	spc (0.113366)