Non-Coding RNA Search

Ss1.1-Pig4-TMW8023P21.3

Sequence:


               
               CATCAAGCTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCTTTCAGCGCAGACACCGGAGG
GGGCGGCCGGGAGAGCAACATCCACCTGATCCCGTACATCATCCACACTGTGCTTTACGT
CCTGAACACAACCCGAGCAACTTCCCGAGAGGAGAAGAACCTCCAGGGCTTTCTGGAGCA
GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCCACTATTTCACAGT
CCTGGCCCTCCACATCCTGCCCCCCGAGAAGTGGAGAGCCACACGCGTGGAAATCCTGCG
GAGGCTGCTGGTGACCTCTCAGGCCCGGGCAGTGGCTCCAGGGGGAGCCACCAGGCTGAC
AGACAAGGCGGTGAAGGACTACTCCGTGTATCGCTCTTCCCTTCTCTTCTGGGCTCTCGT
CGATCTCATTTACAACATGTTTAAGAAGGTGCCGACCAGCAACACGGAGGGAGGCTGGTC
CTGCTCGCTCGCGGAGTACATCCGCCACAACGACATGCCCATCCACGAGGCTGCCGACAA
GGCCCTGAAGGCCTTCCAGGAGGAGTTCATGCCCGTGGAGACCTTCTCCGAGTTCCTCGA
TGCCGCCGGTCTCTTAGCAGAAATCACCGATCCAGAGAGCTTCCTGAAGGATCTGCTGAA
CTCAGTGCCCTGAGCACCATGCGGAATCTGCGGCCGACGGAGATTGACGCTAGCTGGCCT
TCCATCCTTCTGTGTCTCCCTCCCGTGCGTTGACTCCCCCACGGGGTGCTGCAACACTGC
TCCTCCCCCTCCCCCTTCTTCTTGGAGTGGCTTGGGGCTTTTAGGCCTCCTGTTTATCTC
GTGTGTGTGGTGCACTAGCTATGAAGTTGTCTGTGACCCAAGCCGTCGAAGGATCTGTAC
ATACCTGGGAGCCATGAGTTGTCCTGGCCGACTTAATACTTGAGTGTGCCCATCCTGAGA
AATAAACGAATGACTTAATACACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAAGCTGCTCTTCCTGCGCTTCGCCATGGAGCAGTCTTTCAGCGCAGACACCGGAGG
GGGCGGCCGGGAGAGCAACATCCACCTGATCCCGTACATCATCCACACTGTGCTTTACGT
CCTGAACACAACCCGAGCAACTTCCCGAGAGGAGAAGAACCTCCAGGGCTTTCTGGAGCA
GCCCAAGGAGAAGTGGGTGGAGAGTGCCTTTGAAGTGGACGGGCCCCACTATTTCACAGT
CCTGGCCCTCCACATCCTGCCCCCCGAGAAGTGGAGAGCCACACGCGTGGAAATCCTGCG
GAGGCTGCTGGTGACCTCTCAGGCCCGGGCAGTGGCTCCAGGGGGAGCCACCAGGCTGAC
AGACAAGGCGGTGAAGGACTACTCCGTGTATCGCTCTTCCCTTCTCTTCTGGGCTCTCGT
CGATCTCATTTACAACATGTTTAAGAAGGTGCCGACCAGCAACACGGAGGGAGGCTGGTC
CTGCTCGCTCGCGGAGTACATCCGCCACAACGACATGCCCATCCACGAGGCTGCCGACAA
GGCCCTGAAGGCCTTCCAGGAGGAGTTCATGCCCGTGGAGACCTTCTCCGAGTTCCTCGA
TGCCGCCGGTCTCTTAGCAGAAATCACCGATCCAGAGAGCTTCCTGAAGGATCTGCTGAA
CTCAGTGCCCTGAGCACCATGCGGAATCTGCGGCCGACGGAGATTGACGCTAGCTGGCCT
TCCATCCTTCTGTGTCTCCCTCCCGTGCGTTGACTCCCCCACGGGGTGCTGCAACACTGC
TCCTCCCCCTCCCCCTTCTTCTTGGAGTGGCTTGGGGCTTTTAGGCCTCCTGTTTATCTC
GTGTGTGTGGTGCACTAGCTATGAAGTTGTCTGTGACCCAAGCCGTCGAAGGATCTGTAC
ATACCTGGGAGCCATGAGTTGTCCTGGCCGACTTAATACTTGAGTGTGCCCATCCTGAGA
AATAAACGAATGACTTAATACACAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49522558|gb|AAH73905.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49522558|gb|AAH73905.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               127-358, gnl|bosTau2|chr2 (60999869-60999638)
               

               
               127-358, gnl|Hg17|chr1 (19153376-19153145)
               

               
               127-358, gnl|Mm7|chr4 (138860896-138861127)
               


               
               608-981, gnl|bosTau2|chr2 (60993237-60992876)
               

               
               608-981, gnl|Hg17|chr1 (19146697-19146320)
               

               
               608-981, gnl|Mm7|chr4 (138867607-138867964)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               127-358, gnl|bosTau2|chr2 (60999869-60999638)
               

               
               127-358, gnl|Hg17|chr1 (19153376-19153145)
               

               
               127-358, gnl|Mm7|chr4 (138860896-138861127)
               


               
               608-981, gnl|bosTau2|chr2 (60993237-60992876)
               

               
               608-981, gnl|Hg17|chr1 (19146697-19146320)
               

               
               608-981, gnl|Mm7|chr4 (138867607-138867964)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               hyp (0.285673)
               

               
               pty (0.285429)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               ebs (0.236602)
               

               
               jej (0.197844)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               eli (0.151814)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	127-358, gnl\|bosTau2\|chr2 (60999869-60999638)
	127-358, gnl\|Hg17\|chr1 (19153376-19153145)
	127-358, gnl\|Mm7\|chr4 (138860896-138861127)

	608-981, gnl\|bosTau2\|chr2 (60993237-60992876)
	608-981, gnl\|Hg17\|chr1 (19146697-19146320)
	608-981, gnl\|Mm7\|chr4 (138867607-138867964)

	elu (0.385356)
	hyp (0.285673)
	pty (0.285429)
	ese (0.253004)
	cbe (0.239234)
	ebs (0.236602)
	jej (0.197844)
	fty (0.17584)
	fbs (0.175346)
	fhi (0.169578)
	eli (0.151814)
	nmm (0.132802)
	ute (0.132784)
	eep (0.122564)
	pgl (0.118483)
	cty (0.10408)
	nbm (0.0993246)