Ss1.1-Pig4-TMW8024A05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCACCTCTGCAGTTGATAATAATGAAGCACAGAAAAAAAAACAGGAGGCACTGAAACTT CAGCAGGATGTAAGGAAAAGGAAACAAGAAATTTTAGAAAAGCACATTGAAACACAGAAG ATGTTAATTTCAAAACTGGAGAAAAACAAAGCAATGAAGTCTGAAGATAAAGCAGAAATA ATGAAAACTTTAGAGGTTTTAACAAAAAATATTACCAAGTTGAAAGATGAGGTCAAAGCT GCTTCTCCTGGACGCTGTCTTCCAAAAAGTATAAAAACCAAGACTCAGATGCAGAAAGAA TTGCTTGACACAGAACTGGATTTGTATAAGAAGATGCAAGCTGGAGAAGAAGTCACTGAA CTGAGGCGAAAGTATACGGAATTACAGCTGGAGGCTGCAAAACGAGGGATTCTTTCATCT GGCCGTGGTAGAGGAATTCATTCAAGAGGTCGAGGTGCTGCTCATGGCCGAGGCAGGGGT CGAGGTCGAGGTCGAGGTGTGCCTGGTCATGCTGTAGTGGATCACCGTCCCAGGGCTTTG GAGATTTCTGCATTTACAGAGAGTGATAGAGAAGACCTTCTTCCTCATTTTGCGCAATAT GGTGAAATTGAAGATTGTCAGATTGATGACTCTTCACTTCATGCAGTAATTACGTTCAAG ACACGAGCAGAAGCTGAAGCAGCTGCAGTTCATGGAGCTCGTTTCAAAGGGCAGGATCTA AAACTGGCATGGAATAAACCAATAACTAATATTTCAGCTGTTGAAACAGAAGAAGTTGAA CCTGATGAAGAGGAATTTCAGGAAGAGTCTTTGGTGGATGACTCATTACTTCAAGATGAT GATGAAGAAGAAGAGGACAATGAATCTCGCTCTTGGAGAAGATGATTTGACTGATCATTG ATCTGCATATGCTAGAACTCTACCTGTGTTTCATTAGTATTACCTAATGTACTTTTACAT ATTTGTAAAAACAATTTTTGGTAAAAATGTGATGAAGATGGATTTCACAAATAGACAAAA GAGAAGAAAACTACCTTCTGAATCCTGTATTTTGAAAGATTGATGTTTGCGTTTTATTTC AGTAAACAATTGCTAAAGACATCACACTAGAAACATATGCAATGTTTTTATTACATACTT CTACTGAACATTACAAAATTCTTTGGGTTCTTTGTAATTTAATGAATAGATATGAAGACT TAATGACCAATACTTGTTATAACTTAGAGGATTTTGTTTTACTCCAAATAAGGAATGAAT TTGCATTTAAAATCTTAATGAATGTTTTCAAAAATGAATAGATAACATAGTACTCTAACT AAAGTCTCCAAGTTATGTATTCATAATTATTACATAGTAGTATGCTTAGGCTTTACTATG TATTAGCCTTTTGTTGGACTTGTGTATGTATTTTACATATGGGTTTTAATGATAACGGTG TATGACTGCTTTGCGTTTGAGTCCTTATGCATTCAGATGTTAAAAATAAAGTGGAATGGT CTCTTGAAAAGAAAAGAAAAGAAAAAAAATGACAAAAAAAAAAAGACAATGTTCCTTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCACCTCTGCAGTTGATAATAATGAAGCACAGAAAAAAAAACAGGAGGCACTGAAACTT CAGCAGGATGTAAGGAAAAGGAAACAAGAAATTTTAGAAAAGCACATTGAAACACAGAAG ATGTTAATTTCAAAACTGGAGAAAAACAAAGCAATGAAGTCTGAAGATAAAGCAGAAATA ATGAAAACTTTAGAGGTTTTAACAAAAAATATTACCAAGTTGAAAGATGAGGTCAAAGCT GCTTCTCCTGGACGCTGTCTTCCAAAAAGTATAAAAACCAAGACTCAGATGCAGAAAGAA TTGCTTGACACAGAACTGGATTTGTATAAGAAGATGCAAGCTGGAGAAGAAGTCACTGAA CTGAGGCGAAAGTATACGGAATTACAGCTGGAGGCTGCAAAACGAGGGATTCTTTCATCT GGCCGTGGTAGAGGAATTCATTCAAGAGGTCGAGGTGCTGCTCATGGCCGAGGCAGGGGT CGAGGTCGAGGTCGAGGTGTGCCTGGTCATGCTGTAGTGGATCACCGTCCCAGGGCTTTG GAGATTTCTGCATTTACAGAGAGTGATAGAGAAGACCTTCTTCCTCATTTTGCGCAATAT GGTGAAATTGAAGATTGTCAGATTGATGACTCTTCACTTCATGCAGTAATTACGTTCAAG ACACGAGCAGAAGCTGAAGCAGCTGCAGTTCATGGAGCTCGTTTCAAAGGGCAGGATCTA AAACTGGCATGGAATAAACCAATAACTAATATTTCAGCTGTTGAAACAGAAGAAGTTGAA CCTGATGAAGAGGAATTTCAGGAAGAGTCTTTGGTGGATGACTCATTACTTCAAGATGAT GATGAAGAAGAAGAGGACAATGAATCTCGCTCTTGGAGAAGATGATTTGACTGATCATTG ATCTGCATATGCTAGAACTCTACCTGTGTTTCATTAGTATTACCTAATGTACTTTTACAT ATTTGTAAAAACAATTTTTGGTAAAAATGTGATGAAGATGGATTTCACAAATAGACAAAA GAGAAGAAAACTACCTTCTGAATCCTGTATTTTGAAAGATTGATGTTTGCGTTTTATTTC AGTAAACAATTGCTAAAGACATCACACTAGAAACATATGCAATGTTTTTATTACATACTT CTACTGAACATTACAAAATTCTTTGGGTTCTTTGTAATTTAATGAATAGATATGAAGACT TAATGACCAATACTTGTTATAACTTAGAGGATTTTGTTTTACTCCAAATAAGGAATGAAT TTGCATTTAAAATCTTAATGAATGTTTTCAAAAATGAATAGATAACATAGTACTCTAACT AAAGTCTCCAAGTTATGTATTCATAATTATTACATAGTAGTATGCTTAGGCTTTACTATG TATTAGCCTTTTGTTGGACTTGTGTATGTATTTTACATATGGGTTTTAATGATAACGGTG TATGACTGCTTTGCGTTTGAGTCCTTATGCATTCAGATGTTAAAAATAAAGTGGAATGGT CTCTTGAAAAGAAAAGAAAAGAAAAAAAATGACAAAAAAAAAAAGACAATGTTCCTTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 875-1034, + strand, RNAz p=0.889281 | |
| 1275-1472, - strand, RNAz p=0.897262 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 875-1034, + strand, RNAz p=0.889281 | |
| 1275-1472, - strand, RNAz p=0.897262 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL834343, + |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 119-288, gnl|bosTau2|chr12 (31140073-31140242) | |
| 119-288, gnl|canFam2|chr22 (35554318-35554496) | |
| 119-288, gnl|danRer3|chr11 (11737645-11737823) | |
| 119-288, gnl|dasNov1|scaffold_23452 (42959-42783) | |
| 119-288, gnl|echTel1|scaffold_221745 (898-1076) | |
| 119-288, gnl|fr1|chrUn (204346573-204346395) | |
| 119-288, gnl|galGal2|chr1 (149890421-149890240) | |
| 119-288, gnl|hg17|chr13 (78814798-78814976) | |
| 119-288, gnl|Hg17|chr13 (78814969-78814800) | |
| 119-288, gnl|loxAfr1|scaffold_1700 (55088-54910) | |
| 119-288, gnl|mm7|chr14 (99559892-99560070) | |
| 119-288, gnl|Mm7|chr14 (99560063-99559894) | |
| 119-288, gnl|monDom2|scaffold_8 (17551840-17552018) | |
| 119-288, gnl|oryCun1|scaffold_166695 (13833-14006) | |
| 119-288, gnl|panTro1|chr14 (61469165-61469343) | |
| 119-288, gnl|rheMac2|chr17 (59849487-59849665) | |
| 119-288, gnl|rn3|chr15 (89206227-89206405) | |
| 119-288, gnl|tetNig1|chr5 (9204652-9204830) | |
| 119-288, gnl|xenTro1|scaffold_141 (1031655-1031477) | |
| 392-594, gnl|bosTau2|chr12 (31144134-31144336) | |
| 392-594, gnl|canFam2|chr22 (35549350-35549589) | |
| 392-594, gnl|danRer3|chr11 (11733066-11733281) | |
| 392-594, gnl|dasNov1|scaffold_23452 (48584-48345) | |
| 392-594, gnl|echTel1|scaffold_57052 (607-368) | |
| 392-594, gnl|fr1|chrUn (204347131-204346903) | |
| 392-594, gnl|galGal2|chr1 (149897543-149897298) | |
| 392-594, gnl|hg17|chr13 (78809222-78809461) | |
| 392-594, gnl|Hg17|chr13 (78809440-78809238) | |
| 392-594, gnl|loxAfr1|scaffold_1700 (60403-60164) | |
| 392-594, gnl|mm7|chr14 (99554228-99554467) | |
| 392-594, gnl|Mm7|chr14 (99554446-99554244) | |
| 392-594, gnl|monDom2|scaffold_8 (17546740-17546975) | |
| 392-594, gnl|oryCun1|scaffold_116766 (5000-4761) | |
| 392-594, gnl|panTro1|chr14 (61463585-61463824) | |
| 392-594, gnl|rheMac2|chr17 (59843719-59843958) | |
| 392-594, gnl|rn3|chr15 (89200586-89200824) | |
| 392-594, gnl|tetNig1|chr5 (9204083-9204301) | |
| 392-594, gnl|xenTro1|scaffold_141 (1033831-1033603) | |
| 682-795, gnl|bosTau2|chr12 (31156780-31156893) | |
| 682-795, gnl|canFam2|chr22 (35539286-35539408) | |
| 682-795, gnl|dasNov1|scaffold_67181 (1613-1491) | |
| 682-795, gnl|echTel1|scaffold_310783 (8949-9071) | |
| 682-795, gnl|fr1|chrUn (204347748-204347627) | |
| 682-795, gnl|galGal2|chr1 (149902381-149902259) | |
| 682-795, gnl|hg17|chr13 (78794479-78794601) | |
| 682-795, gnl|Hg17|chr13 (78794598-78794485) | |
| 682-795, gnl|loxAfr1|scaffold_1700 (74551-74429) | |
| 682-795, gnl|mm7|chr14 (99546641-99546763) | |
| 682-795, gnl|Mm7|chr14 (99546760-99546647) | |
| 682-795, gnl|monDom2|scaffold_8 (17533358-17533480) | |
| 682-795, gnl|panTro1|chr14 (61448912-61449009) | |
| 682-795, gnl|rheMac2|chr17 (59828429-59828551) | |
| 682-795, gnl|rn3|chr15 (89189811-89189933) | |
| 682-795, gnl|tetNig1|chr5 (9203556-9203677) | |
| 682-795, gnl|xenTro1|scaffold_141 (1036447-1036325) | |
| 796-1560, gnl|bosTau2|chr12 (31158512-31159276) | |
| 796-1560, gnl|Hg17|chr13 (78792846-78792065) | |
| 796-1560, gnl|Mm7|chr14 (99544947-99544181) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 119-288, gnl|bosTau2|chr12 (31140073-31140242) | |
| 119-288, gnl|canFam2|chr22 (35554318-35554496) | |
| 119-288, gnl|danRer3|chr11 (11737645-11737823) | |
| 119-288, gnl|dasNov1|scaffold_23452 (42959-42783) | |
| 119-288, gnl|echTel1|scaffold_221745 (898-1076) | |
| 119-288, gnl|fr1|chrUn (204346573-204346395) | |
| 119-288, gnl|galGal2|chr1 (149890421-149890240) | |
| 119-288, gnl|hg17|chr13 (78814798-78814976) | |
| 119-288, gnl|Hg17|chr13 (78814969-78814800) | |
| 119-288, gnl|loxAfr1|scaffold_1700 (55088-54910) | |
| 119-288, gnl|mm7|chr14 (99559892-99560070) | |
| 119-288, gnl|Mm7|chr14 (99560063-99559894) | |
| 119-288, gnl|monDom2|scaffold_8 (17551840-17552018) | |
| 119-288, gnl|oryCun1|scaffold_166695 (13833-14006) | |
| 119-288, gnl|panTro1|chr14 (61469165-61469343) | |
| 119-288, gnl|rheMac2|chr17 (59849487-59849665) | |
| 119-288, gnl|rn3|chr15 (89206227-89206405) | |
| 119-288, gnl|tetNig1|chr5 (9204652-9204830) | |
| 119-288, gnl|xenTro1|scaffold_141 (1031655-1031477) | |
| 392-594, gnl|bosTau2|chr12 (31144134-31144336) | |
| 392-594, gnl|canFam2|chr22 (35549350-35549589) | |
| 392-594, gnl|danRer3|chr11 (11733066-11733281) | |
| 392-594, gnl|dasNov1|scaffold_23452 (48584-48345) | |
| 392-594, gnl|echTel1|scaffold_57052 (607-368) | |
| 392-594, gnl|fr1|chrUn (204347131-204346903) | |
| 392-594, gnl|galGal2|chr1 (149897543-149897298) | |
| 392-594, gnl|hg17|chr13 (78809222-78809461) | |
| 392-594, gnl|Hg17|chr13 (78809440-78809238) | |
| 392-594, gnl|loxAfr1|scaffold_1700 (60403-60164) | |
| 392-594, gnl|mm7|chr14 (99554228-99554467) | |
| 392-594, gnl|Mm7|chr14 (99554446-99554244) | |
| 392-594, gnl|monDom2|scaffold_8 (17546740-17546975) | |
| 392-594, gnl|oryCun1|scaffold_116766 (5000-4761) | |
| 392-594, gnl|panTro1|chr14 (61463585-61463824) | |
| 392-594, gnl|rheMac2|chr17 (59843719-59843958) | |
| 392-594, gnl|rn3|chr15 (89200586-89200824) | |
| 392-594, gnl|tetNig1|chr5 (9204083-9204301) | |
| 392-594, gnl|xenTro1|scaffold_141 (1033831-1033603) | |
| 682-795, gnl|bosTau2|chr12 (31156780-31156893) | |
| 682-795, gnl|canFam2|chr22 (35539286-35539408) | |
| 682-795, gnl|dasNov1|scaffold_67181 (1613-1491) | |
| 682-795, gnl|echTel1|scaffold_310783 (8949-9071) | |
| 682-795, gnl|fr1|chrUn (204347748-204347627) | |
| 682-795, gnl|galGal2|chr1 (149902381-149902259) | |
| 682-795, gnl|hg17|chr13 (78794479-78794601) | |
| 682-795, gnl|Hg17|chr13 (78794598-78794485) | |
| 682-795, gnl|loxAfr1|scaffold_1700 (74551-74429) | |
| 682-795, gnl|mm7|chr14 (99546641-99546763) | |
| 682-795, gnl|Mm7|chr14 (99546760-99546647) | |
| 682-795, gnl|monDom2|scaffold_8 (17533358-17533480) | |
| 682-795, gnl|panTro1|chr14 (61448912-61449009) | |
| 682-795, gnl|rheMac2|chr17 (59828429-59828551) | |
| 682-795, gnl|rn3|chr15 (89189811-89189933) | |
| 682-795, gnl|tetNig1|chr5 (9203556-9203677) | |
| 682-795, gnl|xenTro1|scaffold_141 (1036447-1036325) | |
| 796-1560, gnl|bosTau2|chr12 (31158512-31159276) | |
| 796-1560, gnl|Hg17|chr13 (78792846-78792065) | |
| 796-1560, gnl|Mm7|chr14 (99544947-99544181) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ret (0.514933) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| thg (0.253582) | |
| fco (0.157208) | |
| fat (0.147427) | |
| che (0.136314) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ret (0.514933) | |
| vin (0.332557) | |
| bfe (0.299715) | |
| cte (0.29274) | |
| thg (0.253582) | |
| fco (0.157208) | |
| fat (0.147427) | |
| che (0.136314) | |
| sug (0.127291) | |
| cty (0.10408) |