Ss1.1-Pig4-TMW8024A13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCAGATCCGCTCTCTGGTCGAGAAAATACGGAAAAAACAAAAAGGTCTGTCTGTCACTT TTGATGGAAAAAGAGAAGATTACTTTCCTGACCTAATGAAATGGGCCTCTGACAATGGAG CCTCTGTCGAGGGCTTCGAGATGGTGAACTTCAAAGAAGAGGGCTTCGGTTTGAGGGCAA CAAGGGACATCAAGGCAGAAGAATTATTTTTGTGGGTTCCACGAAAATTGCTAATGACTG TTGAATCTGCTAAAAATTCAGTGTTGGGGCCCTTGTACGCGCAAGACCGAATTCTTCAAG CCATGGGCAACATCACACTGGCCTTCCACCTGCTGTGCGAGCGCGCCGACCCCAACTCCT TCTGGCAGCCCTACATCCAGACCCTCCCCAGCGAGTACGATACCCCCCTCTACTTCGAGG AAGACGAGGTTCGCTACCTGCAGTCCACGCAGGCCATCCACGACGTCTTCAGCCAGTACA AGAACACGGCGCGGCAGTACGCCTACTTCTATAAGGTCATCCAGACCCATCCGCAGGCCC ACAAACTGCCCTTGAAGGAATCCTTCACTTACGAGGATTACAGGTGGGCCGTCTCCTCTG TGATGACCCGACAAAACCAGATCCCCACGGAGGATGGTTCCCGGGTGACCCTGGCACTGA TCCCCCTGTGGGACATGTGCAATCACACCAACGGCCTGATCACCACCGGCTACAACCTGG AGGACGACCGCTGCGAGTGTGTGGCGCTGCGGGACTTCCGGGCCGGAGAGCAGATTTACA TTTTTTATGGCACTCGGTCAAATGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACA ATAATTCACACGACAGAGTGAAAATAAAACTTGGAGTGAGTAAAAGTGACAGGCTCTACG CTATGAAGGCCGAGGTCCTGGCTCGCGCTGGCATCCCCACGTAAGTAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCAGATCCGCTCTCTGGTCGAGAAAATACGGAAAAAACAAAAAGGTCTGTCTGTCACTT TTGATGGAAAAAGAGAAGATTACTTTCCTGACCTAATGAAATGGGCCTCTGACAATGGAG CCTCTGTCGAGGGCTTCGAGATGGTGAACTTCAAAGAAGAGGGCTTCGGTTTGAGGGCAA CAAGGGACATCAAGGCAGAAGAATTATTTTTGTGGGTTCCACGAAAATTGCTAATGACTG TTGAATCTGCTAAAAATTCAGTGTTGGGGCCCTTGTACGCGCAAGACCGAATTCTTCAAG CCATGGGCAACATCACACTGGCCTTCCACCTGCTGTGCGAGCGCGCCGACCCCAACTCCT TCTGGCAGCCCTACATCCAGACCCTCCCCAGCGAGTACGATACCCCCCTCTACTTCGAGG AAGACGAGGTTCGCTACCTGCAGTCCACGCAGGCCATCCACGACGTCTTCAGCCAGTACA AGAACACGGCGCGGCAGTACGCCTACTTCTATAAGGTCATCCAGACCCATCCGCAGGCCC ACAAACTGCCCTTGAAGGAATCCTTCACTTACGAGGATTACAGGTGGGCCGTCTCCTCTG TGATGACCCGACAAAACCAGATCCCCACGGAGGATGGTTCCCGGGTGACCCTGGCACTGA TCCCCCTGTGGGACATGTGCAATCACACCAACGGCCTGATCACCACCGGCTACAACCTGG AGGACGACCGCTGCGAGTGTGTGGCGCTGCGGGACTTCCGGGCCGGAGAGCAGATTTACA TTTTTTATGGCACTCGGTCAAATGCAGAGTTTGTGATCCACAGTGGTTTTTTCTTTGACA ATAATTCACACGACAGAGTGAAAATAAAACTTGGAGTGAGTAAAAGTGACAGGCTCTACG CTATGAAGGCCGAGGTCCTGGCTCGCGCTGGCATCCCCACGTAAGTAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 44-195, gnl|bosTau2|chr7 (31809874-31810025) | |
| 44-195, gnl|canFam2|chr8 (70919805-70919920) | |
| 44-195, gnl|danRer3|chr17 (14234825-14234940) | |
| 44-195, gnl|dasNov1|scaffold_4890 (53401-53516) | |
| 44-195, gnl|echTel1|scaffold_297349 (19072-18957) | |
| 44-195, gnl|fr1|chrUn (275925242-275925357) | |
| 44-195, gnl|galGal2|chr5 (44787895-44788010) | |
| 44-195, gnl|hg17|chr14 (98997277-98997392) | |
| 44-195, gnl|Hg17|chr14 (98997432-98997281) | |
| 44-195, gnl|loxAfr1|scaffold_3940 (3917-3802) | |
| 44-195, gnl|mm7|chr12 (105681403-105681518) | |
| 44-195, gnl|Mm7|chr12 (105681558-105681407) | |
| 44-195, gnl|monDom2|scaffold_6 (80389902-80390017) | |
| 44-195, gnl|oryCun1|scaffold_210771 (70684-70799) | |
| 44-195, gnl|panTro1|chr15 (99495205-99495320) | |
| 44-195, gnl|rheMac2|chr7 (162723937-162724052) | |
| 44-195, gnl|rn3|chr6 (132533943-132534058) | |
| 44-195, gnl|tetNig1|chrUn_random (26298029-26298144) | |
| 44-195, gnl|xenTro1|scaffold_588 (455944-456059) | |
| 267-524, gnl|bosTau2|chr7 (31812708-31812965) | |
| 267-524, gnl|canFam2|chr8 (70917145-70917418) | |
| 267-524, gnl|danRer3|chr17 (14228319-14228590) | |
| 267-524, gnl|dasNov1|scaffold_4890 (51095-51368) | |
| 267-524, gnl|echTel1|scaffold_297349 (21025-20750) | |
| 267-524, gnl|fr1|chrUn (275924620-275924892) | |
| 267-524, gnl|galGal2|chr5 (44786008-44786281) | |
| 267-524, gnl|hg17|chr14 (98994358-98994631) | |
| 267-524, gnl|Hg17|chr14 (98994626-98994369) | |
| 267-524, gnl|loxAfr1|scaffold_3940 (6370-6097) | |
| 267-524, gnl|mm7|chr12 (105678923-105679191) | |
| 267-524, gnl|Mm7|chr12 (105679186-105678929) | |
| 267-524, gnl|monDom2|scaffold_6 (80387288-80387561) | |
| 267-524, gnl|oryCun1|scaffold_210771 (68262-68535) | |
| 267-524, gnl|panTro1|chr15 (99491718-99491991) | |
| 267-524, gnl|rheMac2|chr7 (162721022-162721295) | |
| 267-524, gnl|rn3|chr6 (132531574-132531842) | |
| 267-524, gnl|tetNig1|chrUn_random (26297032-26297298) | |
| 267-524, gnl|xenTro1|scaffold_588 (452070-452331) | |
| 563-707, gnl|bosTau2|chr21 (44133800-44133656) | |
| 563-707, gnl|canFam2|chr8 (70875750-70875883) | |
| 563-707, gnl|danRer3|chr17 (14218603-14218729) | |
| 563-707, gnl|dasNov1|scaffold_64319 (4164-4028) | |
| 563-707, gnl|echTel1|scaffold_293371 (8487-8361) | |
| 563-707, gnl|fr1|chrUn (275923548-275923686) | |
| 563-707, gnl|galGal2|chr5 (44768308-44768441) | |
| 563-707, gnl|hg17|chr14 (98949025-98949161) | |
| 563-707, gnl|Hg17|chr14 (98949170-98949032) | |
| 563-707, gnl|loxAfr1|scaffold_3940 (43259-43127) | |
| 563-707, gnl|mm7|chr12 (105639402-105639537) | |
| 563-707, gnl|Mm7|chr12 (105639561-105639408) | |
| 563-707, gnl|monDom2|scaffold_6 (80330113-80330246) | |
| 563-707, gnl|oryCun1|scaffold_204740 (4010-3875) | |
| 563-707, gnl|panTro1|chr15 (99446713-99446849) | |
| 563-707, gnl|rheMac2|chr7 (162673665-162673801) | |
| 563-707, gnl|rn3|chr6 (132497454-132497589) | |
| 563-707, gnl|tetNig1|chrUn_random (26295798-26295920) | |
| 563-707, gnl|xenTro1|scaffold_588 (437762-437885) | |
| 771-948, gnl|bosTau2|chr21 (44127892-44127715) | |
| 771-948, gnl|Hg17|chr14 (98941464-98941287) | |
| 771-948, gnl|Mm7|chr12 (105633474-105633297) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-195, gnl|bosTau2|chr7 (31809874-31810025) | |
| 44-195, gnl|canFam2|chr8 (70919805-70919920) | |
| 44-195, gnl|danRer3|chr17 (14234825-14234940) | |
| 44-195, gnl|dasNov1|scaffold_4890 (53401-53516) | |
| 44-195, gnl|echTel1|scaffold_297349 (19072-18957) | |
| 44-195, gnl|fr1|chrUn (275925242-275925357) | |
| 44-195, gnl|galGal2|chr5 (44787895-44788010) | |
| 44-195, gnl|hg17|chr14 (98997277-98997392) | |
| 44-195, gnl|Hg17|chr14 (98997432-98997281) | |
| 44-195, gnl|loxAfr1|scaffold_3940 (3917-3802) | |
| 44-195, gnl|mm7|chr12 (105681403-105681518) | |
| 44-195, gnl|Mm7|chr12 (105681558-105681407) | |
| 44-195, gnl|monDom2|scaffold_6 (80389902-80390017) | |
| 44-195, gnl|oryCun1|scaffold_210771 (70684-70799) | |
| 44-195, gnl|panTro1|chr15 (99495205-99495320) | |
| 44-195, gnl|rheMac2|chr7 (162723937-162724052) | |
| 44-195, gnl|rn3|chr6 (132533943-132534058) | |
| 44-195, gnl|tetNig1|chrUn_random (26298029-26298144) | |
| 44-195, gnl|xenTro1|scaffold_588 (455944-456059) | |
| 267-524, gnl|bosTau2|chr7 (31812708-31812965) | |
| 267-524, gnl|canFam2|chr8 (70917145-70917418) | |
| 267-524, gnl|danRer3|chr17 (14228319-14228590) | |
| 267-524, gnl|dasNov1|scaffold_4890 (51095-51368) | |
| 267-524, gnl|echTel1|scaffold_297349 (21025-20750) | |
| 267-524, gnl|fr1|chrUn (275924620-275924892) | |
| 267-524, gnl|galGal2|chr5 (44786008-44786281) | |
| 267-524, gnl|hg17|chr14 (98994358-98994631) | |
| 267-524, gnl|Hg17|chr14 (98994626-98994369) | |
| 267-524, gnl|loxAfr1|scaffold_3940 (6370-6097) | |
| 267-524, gnl|mm7|chr12 (105678923-105679191) | |
| 267-524, gnl|Mm7|chr12 (105679186-105678929) | |
| 267-524, gnl|monDom2|scaffold_6 (80387288-80387561) | |
| 267-524, gnl|oryCun1|scaffold_210771 (68262-68535) | |
| 267-524, gnl|panTro1|chr15 (99491718-99491991) | |
| 267-524, gnl|rheMac2|chr7 (162721022-162721295) | |
| 267-524, gnl|rn3|chr6 (132531574-132531842) | |
| 267-524, gnl|tetNig1|chrUn_random (26297032-26297298) | |
| 267-524, gnl|xenTro1|scaffold_588 (452070-452331) | |
| 563-707, gnl|bosTau2|chr21 (44133800-44133656) | |
| 563-707, gnl|canFam2|chr8 (70875750-70875883) | |
| 563-707, gnl|danRer3|chr17 (14218603-14218729) | |
| 563-707, gnl|dasNov1|scaffold_64319 (4164-4028) | |
| 563-707, gnl|echTel1|scaffold_293371 (8487-8361) | |
| 563-707, gnl|fr1|chrUn (275923548-275923686) | |
| 563-707, gnl|galGal2|chr5 (44768308-44768441) | |
| 563-707, gnl|hg17|chr14 (98949025-98949161) | |
| 563-707, gnl|Hg17|chr14 (98949170-98949032) | |
| 563-707, gnl|loxAfr1|scaffold_3940 (43259-43127) | |
| 563-707, gnl|mm7|chr12 (105639402-105639537) | |
| 563-707, gnl|Mm7|chr12 (105639561-105639408) | |
| 563-707, gnl|monDom2|scaffold_6 (80330113-80330246) | |
| 563-707, gnl|oryCun1|scaffold_204740 (4010-3875) | |
| 563-707, gnl|panTro1|chr15 (99446713-99446849) | |
| 563-707, gnl|rheMac2|chr7 (162673665-162673801) | |
| 563-707, gnl|rn3|chr6 (132497454-132497589) | |
| 563-707, gnl|tetNig1|chrUn_random (26295798-26295920) | |
| 563-707, gnl|xenTro1|scaffold_588 (437762-437885) | |
| 771-948, gnl|bosTau2|chr21 (44127892-44127715) | |
| 771-948, gnl|Hg17|chr14 (98941464-98941287) | |
| 771-948, gnl|Mm7|chr12 (105633474-105633297) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cut (0.169924) | |
| nco (0.161734) | |
| ebs (0.118301) |