Ss1.1-Pig4-TMW8024A20.3
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CTTCAGTGCACTTGGGGTCAAACTCAGCTCTTCAGTAAACCCGACTTGTTCCACCCCTTG
CAGTTTTTGAGGTCTGCACCAAATCCTTCATCCTTGTGGCTTTCTAGCTAAGAGGAAAAT
TTTGCAGATTTGAACAGTGATTTATGGCCTGCTGCTGCTGCAAATTTTCTTTTTCTGTAA
GAAGCCGAGCCTGTACTGTTCACCTACAAATAAAAATCAGAAACTTACTTTGTAGCGACC
ACAGGTAATCTGCTTCTGCTCCCACCAGTTAAGAATATTTAGACACAGAGATAGGCCTGG
TACATGCCAGTGTCCATACTGACAGTAACATTAGAGAATGTACTTTTGGGACAGTTGTCC
TCCCAAATAGAGCAACACAACTGCTATGGAGGCTTCCATGCACCTTCAGCTCATGGGCTG
AGGGTAAAAGAGGCAGGTAAAAGGGACTGGCCAGTAGGACCCTGGAGCTATTCCGCCATC
CTGTACTGGTGAATTGATCTCAACTAGATCAACCATAAACCTAGGAGCAGAGCTGGATTA
AGGCATTCTTAACAATTGAGTTAGTGTTGCCAGCAGGGCAAACCCAGAGGTGGCTCACAA
AATACTTAGTGGTCATCGTCACCTGGGAGGCGGACACTGCGTTTTTACTTAAACATTTTG
CACTTTGAAGACATTCTCTGTAACTTTCAGGAATGATAGACATGAGCATTTCTTGGGCCT
TTCATTCATGTATACATTTCATTCATTACTGTTGAACTTGGGAGACTAAATTTAAAGTTG
TCTGCATTTAGGTAAGTTCTGGGAACCTAATTTGTCGTGAACTAGGGCCTGTCGGAAGTG
AGGTCTGTTGGGAATCCCTGTCCCAGCTCTTCCTGCCCAGCCTTCCTCCTCTGGCACCCT
GGGGCAGTTGAACTGCGCCGTTTGCAGCAGCAGCTGTCAGGACTCCATCAGACAGACTGC
GCCCTTGGAGTGCAGAGCAAGGGATGCCACTGGGAATGTCGGTTCTTTTTGATATTGCAA
GTCGGGCCTCCTTGGGGCTGAGGGTTGGTCCCCAGACCCCTTAGTGAGAACCCCCTGGCT
TTCCTGCCCACCCTGACTGAGGGCCTTCCTTGCTGTGACAGTATTTGTGGCACTGAAGAG
GATAAAGAAGCTTGAGCCTTCTTTCTGACTTCCACTTTATGGGGCAGAGAGCTGTTTTTC
TACGTAGCACATTGCAGTCTCACCACCATCAGAAAAAAAATCATCCCTTTCATGGTTTAT
ACTGAAATTGCAAACTACTGATGTTATTTTTCAATAACCACTTGTATCTACCATCAACCA
TGAGAGGTGGGAAGAGGTACGCTGTGTCTCTGCAATAAAACTTGCCAGGTTCTACCTCCG
CTGAGCAAAGGATACTTTTATACGTAGGCATAGATCTTCCTCCTTTATTAATCTGACATG
GTGCATCTTGAGACAACATGATGGAATCCAAAGACAATTTGAAACAAAGGTGGATGTAAA
CTCTTTTGGTTGTTTTTGTTTCGTTCTCTTTTTTAAAATCTCTCTTTTTATATTGCTACT
CTGTTTTGAATGTCCATCAGTGTGAAGGGTACGCACTGTTCTGAGGATACTGCACTGCTT
CTTCAGCCTTCCATGGTAATACAGTACCGAGTGTCCAGAAATGATTGTTCTGACCATTTT
GATTTGTAACTTTAAAAATTGGATCTCATGCAATAAAAATGTATTGGCTGCATTTAGCGA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTCAGTGCACTTGGGGTCAAACTCAGCTCTTCAGTAAACCCGACTTGTTCCACCCCTTG
CAGTTTTTGAGGTCTGCACCAAATCCTTCATCCTTGTGGCTTTCTAGCTAAGAGGAAAAT
TTTGCAGATTTGAACAGTGATTTATGGCCTGCTGCTGCTGCAAATTTTCTTTTTCTGTAA
GAAGCCGAGCCTGTACTGTTCACCTACAAATAAAAATCAGAAACTTACTTTGTAGCGACC
ACAGGTAATCTGCTTCTGCTCCCACCAGTTAAGAATATTTAGACACAGAGATAGGCCTGG
TACATGCCAGTGTCCATACTGACAGTAACATTAGAGAATGTACTTTTGGGACAGTTGTCC
TCCCAAATAGAGCAACACAACTGCTATGGAGGCTTCCATGCACCTTCAGCTCATGGGCTG
AGGGTAAAAGAGGCAGGTAAAAGGGACTGGCCAGTAGGACCCTGGAGCTATTCCGCCATC
CTGTACTGGTGAATTGATCTCAACTAGATCAACCATAAACCTAGGAGCAGAGCTGGATTA
AGGCATTCTTAACAATTGAGTTAGTGTTGCCAGCAGGGCAAACCCAGAGGTGGCTCACAA
AATACTTAGTGGTCATCGTCACCTGGGAGGCGGACACTGCGTTTTTACTTAAACATTTTG
CACTTTGAAGACATTCTCTGTAACTTTCAGGAATGATAGACATGAGCATTTCTTGGGCCT
TTCATTCATGTATACATTTCATTCATTACTGTTGAACTTGGGAGACTAAATTTAAAGTTG
TCTGCATTTAGGTAAGTTCTGGGAACCTAATTTGTCGTGAACTAGGGCCTGTCGGAAGTG
AGGTCTGTTGGGAATCCCTGTCCCAGCTCTTCCTGCCCAGCCTTCCTCCTCTGGCACCCT
GGGGCAGTTGAACTGCGCCGTTTGCAGCAGCAGCTGTCAGGACTCCATCAGACAGACTGC
GCCCTTGGAGTGCAGAGCAAGGGATGCCACTGGGAATGTCGGTTCTTTTTGATATTGCAA
GTCGGGCCTCCTTGGGGCTGAGGGTTGGTCCCCAGACCCCTTAGTGAGAACCCCCTGGCT
TTCCTGCCCACCCTGACTGAGGGCCTTCCTTGCTGTGACAGTATTTGTGGCACTGAAGAG
GATAAAGAAGCTTGAGCCTTCTTTCTGACTTCCACTTTATGGGGCAGAGAGCTGTTTTTC
TACGTAGCACATTGCAGTCTCACCACCATCAGAAAAAAAATCATCCCTTTCATGGTTTAT
ACTGAAATTGCAAACTACTGATGTTATTTTTCAATAACCACTTGTATCTACCATCAACCA
TGAGAGGTGGGAAGAGGTACGCTGTGTCTCTGCAATAAAACTTGCCAGGTTCTACCTCCG
CTGAGCAAAGGATACTTTTATACGTAGGCATAGATCTTCCTCCTTTATTAATCTGACATG
GTGCATCTTGAGACAACATGATGGAATCCAAAGACAATTTGAAACAAAGGTGGATGTAAA
CTCTTTTGGTTGTTTTTGTTTCGTTCTCTTTTTTAAAATCTCTCTTTTTATATTGCTACT
CTGTTTTGAATGTCCATCAGTGTGAAGGGTACGCACTGTTCTGAGGATACTGCACTGCTT
CTTCAGCCTTCCATGGTAATACAGTACCGAGTGTCCAGAAATGATTGTTCTGACCATTTT
GATTTGTAACTTTAAAAATTGGATCTCATGCAATAAAAATGTATTGGCTGCATTTAGCGA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
116-845, gnl|bosTau2|chr17 (26355431-26354706) |
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116-845, gnl|Hg17|chr12 (122300699-122299657) |
| |
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880-1740, gnl|bosTau2|chr17 (26354694-26353817) |
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880-1740, gnl|canFam2|chr26 (9285846-9285090) |
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880-1740, gnl|dasNov1|scaffold_2520 (100417-101191) |
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880-1740, gnl|echTel1|scaffold_317122 (54208-53488) |
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880-1740, gnl|hg17|chr12 (122298545-122299314) |
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880-1740, gnl|Hg17|chr12 (122299635-122298673) |
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880-1740, gnl|loxAfr1|scaffold_16655 (22344-23104) |
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880-1740, gnl|mm7|chr5 (123614579-123615304) |
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880-1740, gnl|Mm7|chr5 (123615621-123614719) |
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880-1740, gnl|monDom2|scaffold_97 (3817382-3818180) |
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880-1740, gnl|oryCun1|scaffold_141346 (8055-8770) |
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880-1740, gnl|panTro1|chr10 (125372209-125372979) |
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880-1740, gnl|rheMac2|chr11 (124558983-124559738) |
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880-1740, gnl|rn3|chr12 (33213424-33212637) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
116-845, gnl|bosTau2|chr17 (26355431-26354706) |
|
116-845, gnl|Hg17|chr12 (122300699-122299657) |
| |
|
880-1740, gnl|bosTau2|chr17 (26354694-26353817) |
|
880-1740, gnl|canFam2|chr26 (9285846-9285090) |
|
880-1740, gnl|dasNov1|scaffold_2520 (100417-101191) |
|
880-1740, gnl|echTel1|scaffold_317122 (54208-53488) |
|
880-1740, gnl|hg17|chr12 (122298545-122299314) |
|
880-1740, gnl|Hg17|chr12 (122299635-122298673) |
|
880-1740, gnl|loxAfr1|scaffold_16655 (22344-23104) |
|
880-1740, gnl|mm7|chr5 (123614579-123615304) |
|
880-1740, gnl|Mm7|chr5 (123615621-123614719) |
|
880-1740, gnl|monDom2|scaffold_97 (3817382-3818180) |
|
880-1740, gnl|oryCun1|scaffold_141346 (8055-8770) |
|
880-1740, gnl|panTro1|chr10 (125372209-125372979) |
|
880-1740, gnl|rheMac2|chr11 (124558983-124559738) |
|
880-1740, gnl|rn3|chr12 (33213424-33212637) |
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elu (0.385356) |
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mgp (0.230681) |
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cbl (0.229595) |
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cki (0.165235) |
|
eli (0.151814) |
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cst (0.140036) |
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ebs (0.118301) |
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spc (0.113366) |
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cty (0.10408) |
|
elu (0.385356) |
|
mgp (0.230681) |
|
cbl (0.229595) |
|
cki (0.165235) |
|
eli (0.151814) |
|
cst (0.140036) |
|
ebs (0.118301) |
|
spc (0.113366) |
|
cty (0.10408) |
