Non-Coding RNA Search

Ss1.1-Pig4-TMW8024A21.3

Sequence:


               
               GGGACATTTTTACTTTTATTTTTTGCCTAACAGCTTTTTGTTTGTTCATAGAAAATTCTT
CGCTGCGTTTTTGATGGCTGGCTCTGAAAGCACCATTTGGAGTAGAGGTAGATGGAGGGA
GCGAGGAACCGTGAATGAACTTGCAGGCAGTGCTGGGTGGCCTCCCGGCTCTCTGCGTTT
TGCCTTTAACACTAACTGTACTGTTTTTTCTATTCACGTGTGTCTAGCTGCAGGATGTAA
CATGGAAAACAGTAGCTAAAGATTAAATTCAAAGGACTTTCAGAAGTTAAGATTAAGTTT
TTACATTTAATCTGCTGTTTACCTAAACTTGTATGTATAATTTTTGGGTGGGTATGGGAA
ATTGCTTTGCTAAAAATAAGCTCCCAGGGTGTTTCAAACTTAGAGAAGACCAAGGGGACA
GTATTTTTTATCAAAGGAATCCTATTTTTTCACACTACGTAAACTTGGTTGCTCTGATAC
CCCAGAGCCTGACTGGAGGCCTCCTGGCCCTGGCTCAGGGGCCAGGGCCCTGGTGCTGGG
CTTGCTGTCCCACTGTTGCCAGGGGCTGAAAGCTAGAGGGGCCTCTCAGGCCATGGACAT
CCACACCCCCACCCCATGCATGCACGGCCCACCACCAAGGGGTCTTCATTTCCATGGAAA
AGGGACTCCAAGAGGCAGTGGTGGCCGTAGCCTCCAACCTAGGTGCTCCAGGGTGGGCCA
GCTGCTCATGGGGGTGCCTGGGGAGGTCGAAGGACTCGACCACATCAACCTGTTTTCTTT
TACCCTTCTGTGTGGTCCCCCCCACCCCATCCTAAATGGAATATCATGATTTTTGAAACA
CTCAGTGGGGGACATTTTGGTGAAGATGCAATATTTTTATGTCATGTGATGCTCTTTCCT
CACTTGACCTTGGCCACTTTGTCCCAATAGTCCACAGCCCCACCCTGACCACCCCACACC
TCTTCTCTGGCGCTCTAGTCCCAGGCCTGAATGGCTGGGAAAGGTCTGGTGGCTAGGGAG
GAATGCCAGCAATATAGTTCATAGTAAAAATCTGTGGGCTCTCAAAGCTAATTTTTTACT
AAAGTTTTTATACAGCCTCAAATTGTTTTATTAAAAAAAAAGATTAAAAATGGTGATGCT
TACAGCAGTTTGTACAAGCTCTTAGTGTTGATTCCATGGAACTGACGGCTTTGCTCTTTG
CGATTCCACCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACATTTTTACTTTTATTTTTTGCCTAACAGCTTTTTGTTTGTTCATAGAAAATTCTT
CGCTGCGTTTTTGATGGCTGGCTCTGAAAGCACCATTTGGAGTAGAGGTAGATGGAGGGA
GCGAGGAACCGTGAATGAACTTGCAGGCAGTGCTGGGTGGCCTCCCGGCTCTCTGCGTTT
TGCCTTTAACACTAACTGTACTGTTTTTTCTATTCACGTGTGTCTAGCTGCAGGATGTAA
CATGGAAAACAGTAGCTAAAGATTAAATTCAAAGGACTTTCAGAAGTTAAGATTAAGTTT
TTACATTTAATCTGCTGTTTACCTAAACTTGTATGTATAATTTTTGGGTGGGTATGGGAA
ATTGCTTTGCTAAAAATAAGCTCCCAGGGTGTTTCAAACTTAGAGAAGACCAAGGGGACA
GTATTTTTTATCAAAGGAATCCTATTTTTTCACACTACGTAAACTTGGTTGCTCTGATAC
CCCAGAGCCTGACTGGAGGCCTCCTGGCCCTGGCTCAGGGGCCAGGGCCCTGGTGCTGGG
CTTGCTGTCCCACTGTTGCCAGGGGCTGAAAGCTAGAGGGGCCTCTCAGGCCATGGACAT
CCACACCCCCACCCCATGCATGCACGGCCCACCACCAAGGGGTCTTCATTTCCATGGAAA
AGGGACTCCAAGAGGCAGTGGTGGCCGTAGCCTCCAACCTAGGTGCTCCAGGGTGGGCCA
GCTGCTCATGGGGGTGCCTGGGGAGGTCGAAGGACTCGACCACATCAACCTGTTTTCTTT
TACCCTTCTGTGTGGTCCCCCCCACCCCATCCTAAATGGAATATCATGATTTTTGAAACA
CTCAGTGGGGGACATTTTGGTGAAGATGCAATATTTTTATGTCATGTGATGCTCTTTCCT
CACTTGACCTTGGCCACTTTGTCCCAATAGTCCACAGCCCCACCCTGACCACCCCACACC
TCTTCTCTGGCGCTCTAGTCCCAGGCCTGAATGGCTGGGAAAGGTCTGGTGGCTAGGGAG
GAATGCCAGCAATATAGTTCATAGTAAAAATCTGTGGGCTCTCAAAGCTAATTTTTTACT
AAAGTTTTTATACAGCCTCAAATTGTTTTATTAAAAAAAAAGATTAAAAATGGTGATGCT
TACAGCAGTTTGTACAAGCTCTTAGTGTTGATTCCATGGAACTGACGGCTTTGCTCTTTG
CGATTCCACCCC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               437-593, - strand, RNAz p=0.978528
               

               
               631-815, - strand, RNAz p=0.985105
               

               
               893-1082, - strand, RNAz p=0.998098

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               437-593, - strand, RNAz p=0.978528
               

               
               631-815, - strand, RNAz p=0.985105
               

               
               893-1082, - strand, RNAz p=0.998098

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               999-1070, + strand, RNAmicro p=0.99978

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               999-1070, + strand, RNAmicro p=0.99978

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-1205, gnl|bosTau2|chr22 (37962110-37963347)
               

               
               7-1205, gnl|Hg17|chr3 (49545837-49547040)
               

               
               7-1205, gnl|Mm7|chr9 (107936642-107935449)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-1205, gnl|bosTau2|chr22 (37962110-37963347)
               

               
               7-1205, gnl|Hg17|chr3 (49545837-49547040)
               

               
               7-1205, gnl|Mm7|chr9 (107936642-107935449)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               sme (0.305437)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.305437)
               

               
               cga (0.279096)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	437-593, - strand, RNAz p=0.978528
	631-815, - strand, RNAz p=0.985105
	893-1082, - strand, RNAz p=0.998098

	7-1205, gnl\|bosTau2\|chr22 (37962110-37963347)
	7-1205, gnl\|Hg17\|chr3 (49545837-49547040)
	7-1205, gnl\|Mm7\|chr9 (107936642-107935449)

	sme (0.305437)
	cga (0.279096)
	nms (0.213858)
	mas (0.210305)
	cty (0.20816)
	nlu (0.191681)
	ute (0.132784)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)