Ss1.1-Pig4-TMW8024A22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAAGGTCCCTTTGCCACCTAAAAACATCACTGCTCCGTCCCGCCCACCTCCGGGACT GACTGGTCAGAAGCCACCCTTGTCTACGTGGGATAATTCTCCCCTTCGTGTAGGTGGAGG ATGGGGAAATTCTGACGCCAGGTATACCCCAGGTTCCAGCTGGGGTGAGAGCAGCTCAGG GAGAATAACAAATTGGCTTGTTCTAAAAAACCTTACACCTCAGATCGATGGCTCAACTCT GCGTACTCTGTGCATGCAGCATGGCCCACTGATAACATTCCACCTGAACCTCCCACATGG AAATGCTTTGGTCCGTTACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCA CATGTGTGTACTGGGGAACACTACTATTCTTGCTGAGTTTGCCAGTGAAGAGGAGATCAG TCGTTTCTTTGCACAAAGTCAGTCTCTGACCCCTTCTCCCAGCTGGCAGTCTCTCGGGTC CAGCCAGAGCCGGCTGGGCTCCCTCGACTGTTCCCACTCATTCTCCAGCCGGACCGATCT CAATCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACCTTCATGGCACTTC CCTCTGGGGGACCCCACATTATTCCACAAGCCTGTGGGGTCCTCCGAGCAGCAGCGACCC CCGGGGAATTAGCAGCCCATCCCCCATTAATGCTTTTCTTTCTGTTGACCACCTGGGTGG GGGTGGAGAGTCCATGTAACAGTGTAGACTAGACTCCCGGACTGCGACCTCAAGATGAGA AAGAAAGGAGCACTAAGTCGGGCTCGCCGCCTGCAGCCAGGGGCCACCTGTGGGAACAGC TATTCTCTGCACATTTTCCACTTTGTTTTCCCTGAAACATATCAGTTTGAATACTTGAAT CATGCAGGCCAATATTATAATGTGAAAAGGTATCTATCTATTTACACTCCCAAATAGCGC CATACATGCTAAACCGTATAGAATGAGCTCACTTGTGTATATTCATCATGTTTAGCCTTT GAGTTCTTTTTTTTTTCCCCCTTTCTAGCCCCTCCCCCTCCCTCCATTCATTCTTTCTCT TTTCTTTTTTCTTTTTGCAAAACCATTTTTTGGGCTGATAATGAATGAGCTTTTAACTTT GCACTGAATGATGTTCTCTCCGTCTAATCGGCAATATGGGGGGGCAGCTGTTCCAGTGTA AATGTTTACTCAAGGATGTTCTTAAAAGGTGTGCGCTCTCTACTATGCCTTGATGTTTGC CTACCTTATTGTGGTATCGTGGAGTTTAAAAGATCAAGTTATGATACTGACTTAGGACTA TAAATGAAAGTATTGCACCAGTTTTTTCATGTTGTAAAACTAAAGAATTTCGCTCTGCAG TTTGAAAAACTGTGGCCACAGCTGTGACTTGCAGCCCACCTGCCACCCAGGACGGGCCCT GCACTTTGAATAGGCTTTCCATTTTGTTTTGAAGGTTCCCACATTGAACCTTCTTGTTTA CAGATTTTTTTGTTTTGTTTTTTGAGAAAAAAAAAATGTTTACTCTTCCATCATTTAAAA AAAAATAATTAAAAGACAAAAAAAAAAATGGAGGATGATTTAAAAGATGCTTTCTATCTC TGGGAAAAAGGAGCAGCATTTGGCCATGTTCTTTTGTTTTTCTATTCCTGTCCTAAATCA AAGAGCATGGTTCTCAGGAAAACCAGTTCCCCAGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAAGGTCCCTTTGCCACCTAAAAACATCACTGCTCCGTCCCGCCCACCTCCGGGACT GACTGGTCAGAAGCCACCCTTGTCTACGTGGGATAATTCTCCCCTTCGTGTAGGTGGAGG ATGGGGAAATTCTGACGCCAGGTATACCCCAGGTTCCAGCTGGGGTGAGAGCAGCTCAGG GAGAATAACAAATTGGCTTGTTCTAAAAAACCTTACACCTCAGATCGATGGCTCAACTCT GCGTACTCTGTGCATGCAGCATGGCCCACTGATAACATTCCACCTGAACCTCCCACATGG AAATGCTTTGGTCCGTTACAGTTCAAAAGAAGAGGTAGTGAAGGCACAAAAGTCTCTGCA CATGTGTGTACTGGGGAACACTACTATTCTTGCTGAGTTTGCCAGTGAAGAGGAGATCAG TCGTTTCTTTGCACAAAGTCAGTCTCTGACCCCTTCTCCCAGCTGGCAGTCTCTCGGGTC CAGCCAGAGCCGGCTGGGCTCCCTCGACTGTTCCCACTCATTCTCCAGCCGGACCGATCT CAATCACTGGAATGGTGCTGGGCTGTCGGGAACTAACTGTGGAGACCTTCATGGCACTTC CCTCTGGGGGACCCCACATTATTCCACAAGCCTGTGGGGTCCTCCGAGCAGCAGCGACCC CCGGGGAATTAGCAGCCCATCCCCCATTAATGCTTTTCTTTCTGTTGACCACCTGGGTGG GGGTGGAGAGTCCATGTAACAGTGTAGACTAGACTCCCGGACTGCGACCTCAAGATGAGA AAGAAAGGAGCACTAAGTCGGGCTCGCCGCCTGCAGCCAGGGGCCACCTGTGGGAACAGC TATTCTCTGCACATTTTCCACTTTGTTTTCCCTGAAACATATCAGTTTGAATACTTGAAT CATGCAGGCCAATATTATAATGTGAAAAGGTATCTATCTATTTACACTCCCAAATAGCGC CATACATGCTAAACCGTATAGAATGAGCTCACTTGTGTATATTCATCATGTTTAGCCTTT GAGTTCTTTTTTTTTTCCCCCTTTCTAGCCCCTCCCCCTCCCTCCATTCATTCTTTCTCT TTTCTTTTTTCTTTTTGCAAAACCATTTTTTGGGCTGATAATGAATGAGCTTTTAACTTT GCACTGAATGATGTTCTCTCCGTCTAATCGGCAATATGGGGGGGCAGCTGTTCCAGTGTA AATGTTTACTCAAGGATGTTCTTAAAAGGTGTGCGCTCTCTACTATGCCTTGATGTTTGC CTACCTTATTGTGGTATCGTGGAGTTTAAAAGATCAAGTTATGATACTGACTTAGGACTA TAAATGAAAGTATTGCACCAGTTTTTTCATGTTGTAAAACTAAAGAATTTCGCTCTGCAG TTTGAAAAACTGTGGCCACAGCTGTGACTTGCAGCCCACCTGCCACCCAGGACGGGCCCT GCACTTTGAATAGGCTTTCCATTTTGTTTTGAAGGTTCCCACATTGAACCTTCTTGTTTA CAGATTTTTTTGTTTTGTTTTTTGAGAAAAAAAAAATGTTTACTCTTCCATCATTTAAAA AAAAATAATTAAAAGACAAAAAAAAAAATGGAGGATGATTTAAAAGATGCTTTCTATCTC TGGGAAAAAGGAGCAGCATTTGGCCATGTTCTTTTGTTTTTCTATTCCTGTCCTAAATCA AAGAGCATGGTTCTCAGGAAAACCAGTTCCCCAGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 37-154, - strand, RNAz p=0.78673 | |
| 55-154, - strand, RNAz p=0.873156 | |
| 387-825, - strand, RNAz p=0.985432 | |
| 1384-1503, - strand, RNAz p=0.628325 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 37-154, - strand, RNAz p=0.78673 | |
| 55-154, - strand, RNAz p=0.873156 | |
| 387-825, - strand, RNAz p=0.985432 | |
| 1384-1503, - strand, RNAz p=0.628325 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-154, gnl|bosTau2|chr25 (22592425-22592272) | |
| 1-154, gnl|canFam2|chr6 (24272812-24272588) | |
| 1-154, gnl|danRer3|chr3 (29716246-29716042) | |
| 1-154, gnl|dasNov1|scaffold_2883 (56867-57087) | |
| 1-154, gnl|echTel1|scaffold_220525 (8396-8619) | |
| 1-154, gnl|fr1|chrUn (209329602-209329376) | |
| 1-154, gnl|galGal2|chr14 (8899039-8899253) | |
| 1-154, gnl|hg17|chr16 (24738972-24739195) | |
| 1-154, gnl|Hg17|chr16 (24739031-24739184) | |
| 1-154, gnl|loxAfr1|scaffold_6441 (8895-9121) | |
| 1-154, gnl|mm7|chr7 (119292522-119292745) | |
| 1-154, gnl|Mm7|chr7 (119292581-119292734) | |
| 1-154, gnl|monDom2|scaffold_49 (4229847-4230065) | |
| 1-154, gnl|oryCun1|scaffold_205503 (140564-140786) | |
| 1-154, gnl|panTro1|chr18 (25382449-25382672) | |
| 1-154, gnl|rheMac2|chr20 (23301746-23301969) | |
| 1-154, gnl|rn3|chr1 (182188134-182188357) | |
| 1-154, gnl|tetNig1|chrUn_random (40266656-40266882) | |
| 1-154, gnl|xenTro1|scaffold_12 (2248565-2248778) | |
| 352-1716, gnl|bosTau2|chr25 (22589010-22587668) | |
| 352-1716, gnl|Hg17|chr16 (24742241-24743590) | |
| 352-1716, gnl|Mm7|chr7 (119295229-119296555) | |
| 361-722, gnl|bosTau2|chr19 (47927387-47927035) | |
| 361-722, gnl|Hg17|chr17 (73612158-73612510) | |
| 361-722, gnl|Mm7|chr11 (117869533-117869885) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-154, gnl|bosTau2|chr25 (22592425-22592272) | |
| 1-154, gnl|canFam2|chr6 (24272812-24272588) | |
| 1-154, gnl|danRer3|chr3 (29716246-29716042) | |
| 1-154, gnl|dasNov1|scaffold_2883 (56867-57087) | |
| 1-154, gnl|echTel1|scaffold_220525 (8396-8619) | |
| 1-154, gnl|fr1|chrUn (209329602-209329376) | |
| 1-154, gnl|galGal2|chr14 (8899039-8899253) | |
| 1-154, gnl|hg17|chr16 (24738972-24739195) | |
| 1-154, gnl|Hg17|chr16 (24739031-24739184) | |
| 1-154, gnl|loxAfr1|scaffold_6441 (8895-9121) | |
| 1-154, gnl|mm7|chr7 (119292522-119292745) | |
| 1-154, gnl|Mm7|chr7 (119292581-119292734) | |
| 1-154, gnl|monDom2|scaffold_49 (4229847-4230065) | |
| 1-154, gnl|oryCun1|scaffold_205503 (140564-140786) | |
| 1-154, gnl|panTro1|chr18 (25382449-25382672) | |
| 1-154, gnl|rheMac2|chr20 (23301746-23301969) | |
| 1-154, gnl|rn3|chr1 (182188134-182188357) | |
| 1-154, gnl|tetNig1|chrUn_random (40266656-40266882) | |
| 1-154, gnl|xenTro1|scaffold_12 (2248565-2248778) | |
| 352-1716, gnl|bosTau2|chr25 (22589010-22587668) | |
| 352-1716, gnl|Hg17|chr16 (24742241-24743590) | |
| 352-1716, gnl|Mm7|chr7 (119295229-119296555) | |
| 361-722, gnl|bosTau2|chr19 (47927387-47927035) | |
| 361-722, gnl|Hg17|chr17 (73612158-73612510) | |
| 361-722, gnl|Mm7|chr11 (117869533-117869885) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| sme (0.305437) | |
| ste (0.270416) | |
| hea (0.204499) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sme (0.305437) | |
| ste (0.270416) | |
| hea (0.204499) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| pgl (0.118483) | |
| cty (0.10408) |