Non-Coding RNA Search

Ss1.1-Pig4-TMW8024B07.5

Sequence:


               
               CTGGGTAGAGCCTGGGGACTCTGAGACTGCCAAGGGGCCCTGTGTCTGAGGGTGAGCTCA
GCTCTCACAGCAGGCAGGGGAGTGTGCTTGTCTTAGGTGGTTGTGGTGTAGCCCTGGGAC
CAAGCTTAAGGAGAAAAGAAGATACCCACCAAGATGGAAGGAAGGAGAGAAGCTGGATAT
CCTGGCTTTCTTTCTCTCTTTTTCTCTAGGAAAAAGTGGCCAGAGCCACTGACAAGCAGG
AATCAAGGAGCTTCAGTCCCCACCTGCCAGAACCCTGCGTTCCTGGCCATGCTGGGTGCC
AGGGTGCCTGTTCTCCTTCACCTGGGTATCCTGGGGTTATACTTGGTAGAGGAAGAAAGA
AAGAGTCCAGAAATAATTGCCAATATTTGTTTTATTCTCCACTAGCCCTTGGGACCTGAG
TGGCAGCTCCAAGCCCCAGCGCTAGTGTGGAATGGTAGATGTGGACCTCAAGGAGCCACT
AGGTGGCAGCATTGAGCCCTCATTCTTGCCTGAGCGTCCTAAGTGGGAGCCTGGTGGAGC
CTGTCATCCGGGCCACCAGCTCCACCAGCCCCTGATGATGGGCCTGTACCCTCCTACGTG
ACACCCATCTCTGCTGCTTCTGGGCCAGATGGTGAGGAGAACTCCAGACATGCCAGCTTT
GGGGAGCATTCTGCCTGCCAGGGGACGAGATGGATGAGGGAAAGCAGGCTGCCGTGGACA
GTCTGGGATGAAGTGAGACAGGCTAGTCAGGCCAGAGGAGACTAGCCTCCTGAGTGTGTG
GACAGGAAAGTCTTGCCAGCATTTACGTTCCCTCAGTAGCCCTGGAACTTAGCACAGTTT
TCATGGGCTTTCTAGGCCTTTAGCCTAGACCCTTGGGGAAGGGTTCACTCCCTGCCAAGT
CCAGAGCCCCTTATCAGAGGGGAGAGGGGCCAGGTTCCAAGTGTGAATAGCAACTCTAGG
CCTTGCTTTCAGGCCCTTTCTTCTCTCAGATGTGGGATGTCCCCTGGCCCCCTGACTAAT
AAAAGATTGTGAAGCCCCGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGGTAGAGCCTGGGGACTCTGAGACTGCCAAGGGGCCCTGTGTCTGAGGGTGAGCTCA
GCTCTCACAGCAGGCAGGGGAGTGTGCTTGTCTTAGGTGGTTGTGGTGTAGCCCTGGGAC
CAAGCTTAAGGAGAAAAGAAGATACCCACCAAGATGGAAGGAAGGAGAGAAGCTGGATAT
CCTGGCTTTCTTTCTCTCTTTTTCTCTAGGAAAAAGTGGCCAGAGCCACTGACAAGCAGG
AATCAAGGAGCTTCAGTCCCCACCTGCCAGAACCCTGCGTTCCTGGCCATGCTGGGTGCC
AGGGTGCCTGTTCTCCTTCACCTGGGTATCCTGGGGTTATACTTGGTAGAGGAAGAAAGA
AAGAGTCCAGAAATAATTGCCAATATTTGTTTTATTCTCCACTAGCCCTTGGGACCTGAG
TGGCAGCTCCAAGCCCCAGCGCTAGTGTGGAATGGTAGATGTGGACCTCAAGGAGCCACT
AGGTGGCAGCATTGAGCCCTCATTCTTGCCTGAGCGTCCTAAGTGGGAGCCTGGTGGAGC
CTGTCATCCGGGCCACCAGCTCCACCAGCCCCTGATGATGGGCCTGTACCCTCCTACGTG
ACACCCATCTCTGCTGCTTCTGGGCCAGATGGTGAGGAGAACTCCAGACATGCCAGCTTT
GGGGAGCATTCTGCCTGCCAGGGGACGAGATGGATGAGGGAAAGCAGGCTGCCGTGGACA
GTCTGGGATGAAGTGAGACAGGCTAGTCAGGCCAGAGGAGACTAGCCTCCTGAGTGTGTG
GACAGGAAAGTCTTGCCAGCATTTACGTTCCCTCAGTAGCCCTGGAACTTAGCACAGTTT
TCATGGGCTTTCTAGGCCTTTAGCCTAGACCCTTGGGGAAGGGTTCACTCCCTGCCAAGT
CCAGAGCCCCTTATCAGAGGGGAGAGGGGCCAGGTTCCAAGTGTGAATAGCAACTCTAGG
CCTTGCTTTCAGGCCCTTTCTTCTCTCAGATGTGGGATGTCCCCTGGCCCCCTGACTAAT
AAAAGATTGTGAAGCCCCGAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               169-323, - strand, RNAz p=0.992331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               169-323, - strand, RNAz p=0.992331

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-1012, gnl|bosTau2|chr16 (2331536-2332548)
               

               
               17-1012, gnl|Hg17|chr1 (199867008-199868150)
               

               
               17-1012, gnl|Mm7|chr1 (134092429-134091427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-1012, gnl|bosTau2|chr16 (2331536-2332548)
               

               
               17-1012, gnl|Hg17|chr1 (199867008-199868150)
               

               
               17-1012, gnl|Mm7|chr1 (134092429-134091427)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.350693)
               

               
               cga (0.279096)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cbl (0.114797)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.350693)
               

               
               cga (0.279096)
               

               
               ton (0.1755)
               

               
               mcp (0.170648)
               

               
               cbl (0.114797)

	17-1012, gnl\|bosTau2\|chr16 (2331536-2332548)
	17-1012, gnl\|Hg17\|chr1 (199867008-199868150)
	17-1012, gnl\|Mm7\|chr1 (134092429-134091427)

	fbs (0.350693)
	cga (0.279096)
	ton (0.1755)
	mcp (0.170648)
	cbl (0.114797)