Non-Coding RNA Search

Ss1.1-Pig4-TMW8024B17.5

Sequence:


               
               CCAGAGATGATCTTCAGGCTTGAGCAGGGAGAGGAGCCATGGATATTGGAGGATGAATTC
CCAAGCCAGAGCTCCCCAGAAGTCTGGAAAAATGATCACATAAAAGACAGGAGCCAAGAA
AACCAGTCTAAACATGTGTGGGAAGTTGTATTCATCAGTAACAAAATGCTAACTGAAGAA
CAAGGCATACCTAGACCCTACTCCTGTTGCCGCTTGTCTCTTTTCAACCATGATTCATCT
CAAACCATGACGTGCCTTGAGTATACACATGATCTGCACCATATGGAGTTCTGGGCCAGG
GATCAGATCCGAGCTGCAGTTGTGACCTATGCTGAAGCTGTGGCAACGCTGGATCCTTAA
CCCACTGTACTGGTCTGGGATTGAATATGTGTCCCAGAGCTCCAGAGATGATTCCTATCC
CATTACAGCACAAGAGGAATGCCGGGGCCAGCTCAGCAGGATGGGGCTGAAGAATGGGTG
CTGTGGAACTTAAGGAAAAAAAGTTAACATAAAACAAGACACAGAGACATTTATCTTAAG
TAAAGTATACCCATGGATGCGAACAGTTACAATGCAGAAGATATATTATTTCCCCCTTGC
TTCTACACTGCTTCTGATGGAGATACTACCCAGCATTTGGTGGATGTTTGCCTCAAGGGG
CAGACACGTTTATTCCAAGCTGAAACAAAGCATAAATGATTCTGTGGAAGATTTTGACTG
TCCTGCCCATATTCTGCATAATACTTTCTGTTCAAATAGCTTCTAATGTCCTTTCTGTTG
ATGTTGAAGTAATTGTCATGAATTTTTTCTCTTCAACGTTTATACTGTTTGAATTGAGTG
ATTAAAGGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGAGATGATCTTCAGGCTTGAGCAGGGAGAGGAGCCATGGATATTGGAGGATGAATTC
CCAAGCCAGAGCTCCCCAGAAGTCTGGAAAAATGATCACATAAAAGACAGGAGCCAAGAA
AACCAGTCTAAACATGTGTGGGAAGTTGTATTCATCAGTAACAAAATGCTAACTGAAGAA
CAAGGCATACCTAGACCCTACTCCTGTTGCCGCTTGTCTCTTTTCAACCATGATTCATCT
CAAACCATGACGTGCCTTGAGTATACACATGATCTGCACCATATGGAGTTCTGGGCCAGG
GATCAGATCCGAGCTGCAGTTGTGACCTATGCTGAAGCTGTGGCAACGCTGGATCCTTAA
CCCACTGTACTGGTCTGGGATTGAATATGTGTCCCAGAGCTCCAGAGATGATTCCTATCC
CATTACAGCACAAGAGGAATGCCGGGGCCAGCTCAGCAGGATGGGGCTGAAGAATGGGTG
CTGTGGAACTTAAGGAAAAAAAGTTAACATAAAACAAGACACAGAGACATTTATCTTAAG
TAAAGTATACCCATGGATGCGAACAGTTACAATGCAGAAGATATATTATTTCCCCCTTGC
TTCTACACTGCTTCTGATGGAGATACTACCCAGCATTTGGTGGATGTTTGCCTCAAGGGG
CAGACACGTTTATTCCAAGCTGAAACAAAGCATAAATGATTCTGTGGAAGATTTTGACTG
TCCTGCCCATATTCTGCATAATACTTTCTGTTCAAATAGCTTCTAATGTCCTTTCTGTTG
ATGTTGAAGTAATTGTCATGAATTTTTTCTCTTCAACGTTTATACTGTTTGAATTGAGTG
ATTAAAGGATAT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               78-185, gnl|bosTau2|chr28 (7756689-7756796)
               

               
               78-185, gnl|Hg17|chr10 (38383307-38383414)
               

               
               78-185, gnl|Mm7|chr6 (118511926-118512018)
               


               
               544-849, gnl|bosTau2|chr28 (7774826-7775138)
               

               
               544-849, gnl|Hg17|chr10 (38418623-38418915)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               78-185, gnl|bosTau2|chr28 (7756689-7756796)
               

               
               78-185, gnl|Hg17|chr10 (38383307-38383414)
               

               
               78-185, gnl|Mm7|chr6 (118511926-118512018)
               


               
               544-849, gnl|bosTau2|chr28 (7774826-7775138)
               

               
               544-849, gnl|Hg17|chr10 (38418623-38418915)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               spc (0.113366)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.113366)

	78-185, gnl\|bosTau2\|chr28 (7756689-7756796)
	78-185, gnl\|Hg17\|chr10 (38383307-38383414)
	78-185, gnl\|Mm7\|chr6 (118511926-118512018)

	544-849, gnl\|bosTau2\|chr28 (7774826-7775138)
	544-849, gnl\|Hg17\|chr10 (38418623-38418915)