Ss1.1-Pig4-TMW8024B19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTTGTTGTTGCGGCTTCCGCCGCGGGTGGAGGAAGATGGCGTCGGGTGGTGGTGGCTGT AGCGCTTCGGAAAGACTCCCTCCCCCCTTCCCCAGCCTGGAACCGGAGTTCGAGGGGGCG ACAGGGGGGTCGGAACCCGAGGCGGGGGACAGTGACACCGAGGGGGAGGATATTTTCACC GGCGCCGCGGCGGCCAGTAAGCCCCAGTCTCCAAAGAGAATTGCTTCCCTTCTTCCCATC AACAATGGCTCCAAAGAAAACGGTATCCATGAGGAACAAGACCAAGAGCCACAGGATCTC TTTGCAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATAATCAGAAGAAGCTG CCAGCCAAAACGCTCATTTCTCTTCCTCCACAGGAAGCCACAAATTCTTCTAAGCTCCAG CCAAGCTATGAGGAGCTAGAGGAAGAAGAACAGGAAGACCAGTTTGATTTGACAGTCGGC ATAACTGATCCTGAGAAAATAGGGGATGGTATGAATGCCTATGTGGCCTACAAAGTTACA ACACAGACGAGCTTACCAATGTTCAGAAGTAAACAGTTTTCAGTGAAAAGAAGATTTAGT GACTTTCTGGGTCTTTACGAGAAGCTTTCAGAGAAACACTCCCAGAATGGCTTTATTGTC CCTCCTCCACCAGAGAAAAGCCTAATAGGAATGACGAAAGTAAAAGTTGGGAAGGAAGAT TCTTCTTCTGCAGAGTTTCTTGAAAAACGGAGGGCTGCCCTAGAAAGGTACCTTCAGAGG ATTGTGAATCATCCTACCATGGTACAGGACCCTGATGTCAGGGAGTTCTTGGAAAAAGAG GAGCTGCCACGCGCCGTGGGTACCCAGACGTTGAGTGGCGCTGGTCTCCTCAAGATGTTC AACAAAGCCACAGATGCGGTCAGCAAAATGACCATCAAGATGAATGAATCAGACATTTGG TTTGAGGAGAAGCTCCAGGAGGTAGAATGTGAGGAGCAGCGCTTACGCAAACTGCATGCC GTTGTAGAAACTCTAGTCAACCACAGAAAAGAGCTAGCGCTGAACACAGCCCAGTTTGCA AAGAGTCTTGCCATGCTCGGGAGCTCTGAGGACAACACAGCCTTGTCACGGGCACTCTCC CAGCTGGCTGAGGTGGAAGAGAAGATTGAGCAGCTCCACCAGGAACAGGCCAACAACGAC TTCTTCCTCCTTGCCGAGCTCCTAAGTGACTACATTCGCCTCCTGGCCATAGTCCGCGCC GCCTTTGACCAGCGCATGAAGACGTGGCAGCGCTGGCAGGACGCTCAAGCCACACTGCAG AAGAAGCGGGAGGCCGAGGCTCGGCTGCTGTGGGCCAACAAGCCTGACAAGCTGCAGCAG GCCAAGGACGAGATCATAGAGTGGGAGTCTCGGGTGACCCAGTATGAAAGGGACTTTGAA AGGATTTCAACTGTGGTCCGAAAAGAAGTGATACGGTTTGAGAAAGAGAAATCCAAGGAC TTCAAAAACCACGTGATCAAGTACCTTGAAACACTCCTGTATTCACAGCAGCAGCTGGCA AAGTACTGGGAAGCCTTCCTTCCTGAGGCAAAGGCCATCTCCTAACGGACTGAGGACACC AGAGCCCACCTGCCTGACGCTGCCTTTTTATACACTGTCCTCCTCCACCTCTGCTGGACC CCAGTGTGCATCCTGCCTAGCCTGGACCTCACCCCTTCCTCCCTGCCCCATGACCAAACT GTCCCCAGCCACTCTAACATCACTTCAGTTAGCTTCCATATATATTTTCTTACCTGAGAG AATAGTTTCTTGCTTTAAGCAAAAGACCTATAATAGGTGGTGGAATTATGGGATGGGGTG GAGTATTGATATAAATATATAAATACAAATGTATATTTTTCAGGATGTGGTTAGTGAACT GGGAATAACGTTTTCTGTTACTCCTGACGGTGCCATGAAAAGATTATGTAATAAAATACT TTAAAATCAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTTGTTGTTGCGGCTTCCGCCGCGGGTGGAGGAAGATGGCGTCGGGTGGTGGTGGCTGT AGCGCTTCGGAAAGACTCCCTCCCCCCTTCCCCAGCCTGGAACCGGAGTTCGAGGGGGCG ACAGGGGGGTCGGAACCCGAGGCGGGGGACAGTGACACCGAGGGGGAGGATATTTTCACC GGCGCCGCGGCGGCCAGTAAGCCCCAGTCTCCAAAGAGAATTGCTTCCCTTCTTCCCATC AACAATGGCTCCAAAGAAAACGGTATCCATGAGGAACAAGACCAAGAGCCACAGGATCTC TTTGCAGATGCCACAGTGGAGCTATCCTTGGACAGCACACAAAATAATCAGAAGAAGCTG CCAGCCAAAACGCTCATTTCTCTTCCTCCACAGGAAGCCACAAATTCTTCTAAGCTCCAG CCAAGCTATGAGGAGCTAGAGGAAGAAGAACAGGAAGACCAGTTTGATTTGACAGTCGGC ATAACTGATCCTGAGAAAATAGGGGATGGTATGAATGCCTATGTGGCCTACAAAGTTACA ACACAGACGAGCTTACCAATGTTCAGAAGTAAACAGTTTTCAGTGAAAAGAAGATTTAGT GACTTTCTGGGTCTTTACGAGAAGCTTTCAGAGAAACACTCCCAGAATGGCTTTATTGTC CCTCCTCCACCAGAGAAAAGCCTAATAGGAATGACGAAAGTAAAAGTTGGGAAGGAAGAT TCTTCTTCTGCAGAGTTTCTTGAAAAACGGAGGGCTGCCCTAGAAAGGTACCTTCAGAGG ATTGTGAATCATCCTACCATGGTACAGGACCCTGATGTCAGGGAGTTCTTGGAAAAAGAG GAGCTGCCACGCGCCGTGGGTACCCAGACGTTGAGTGGCGCTGGTCTCCTCAAGATGTTC AACAAAGCCACAGATGCGGTCAGCAAAATGACCATCAAGATGAATGAATCAGACATTTGG TTTGAGGAGAAGCTCCAGGAGGTAGAATGTGAGGAGCAGCGCTTACGCAAACTGCATGCC GTTGTAGAAACTCTAGTCAACCACAGAAAAGAGCTAGCGCTGAACACAGCCCAGTTTGCA AAGAGTCTTGCCATGCTCGGGAGCTCTGAGGACAACACAGCCTTGTCACGGGCACTCTCC CAGCTGGCTGAGGTGGAAGAGAAGATTGAGCAGCTCCACCAGGAACAGGCCAACAACGAC TTCTTCCTCCTTGCCGAGCTCCTAAGTGACTACATTCGCCTCCTGGCCATAGTCCGCGCC GCCTTTGACCAGCGCATGAAGACGTGGCAGCGCTGGCAGGACGCTCAAGCCACACTGCAG AAGAAGCGGGAGGCCGAGGCTCGGCTGCTGTGGGCCAACAAGCCTGACAAGCTGCAGCAG GCCAAGGACGAGATCATAGAGTGGGAGTCTCGGGTGACCCAGTATGAAAGGGACTTTGAA AGGATTTCAACTGTGGTCCGAAAAGAAGTGATACGGTTTGAGAAAGAGAAATCCAAGGAC TTCAAAAACCACGTGATCAAGTACCTTGAAACACTCCTGTATTCACAGCAGCAGCTGGCA AAGTACTGGGAAGCCTTCCTTCCTGAGGCAAAGGCCATCTCCTAACGGACTGAGGACACC AGAGCCCACCTGCCTGACGCTGCCTTTTTATACACTGTCCTCCTCCACCTCTGCTGGACC CCAGTGTGCATCCTGCCTAGCCTGGACCTCACCCCTTCCTCCCTGCCCCATGACCAAACT GTCCCCAGCCACTCTAACATCACTTCAGTTAGCTTCCATATATATTTTCTTACCTGAGAG AATAGTTTCTTGCTTTAAGCAAAAGACCTATAATAGGTGGTGGAATTATGGGATGGGGTG GAGTATTGATATAAATATATAAATACAAATGTATATTTTTCAGGATGTGGTTAGTGAACT GGGAATAACGTTTTCTGTTACTCCTGACGGTGCCATGAAAAGATTATGTAATAAAATACT TTAAAATCAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.565026 | |
| 1089-1208, - strand, RNAz p=0.965966 | |
| 1708-1945, + strand, RNAz p=0.93587 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.565026 | |
| 1089-1208, - strand, RNAz p=0.965966 | |
| 1708-1945, + strand, RNAz p=0.93587 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_148955, + | |
| 3' of NM_148955, + |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 1-191, gnl|bosTau2|chr10 (30096088-30096278) | |
| 1-191, gnl|Hg17|chr15 (62175230-62175420) | |
| 1-191, gnl|Mm7|chr9 (66154442-66154252) | |
| 298-435, gnl|bosTau2|chr10 (30113168-30113305) | |
| 298-435, gnl|canFam2|chr30 (31615510-31615633) | |
| 298-435, gnl|danRer3|chr25 (4677818-4677729) | |
| 298-435, gnl|dasNov1|scaffold_13084 (3532-3653) | |
| 298-435, gnl|echTel1|scaffold_310842 (62702-62581) | |
| 298-435, gnl|fr1|chrUn (14324181-14324092) | |
| 298-435, gnl|galGal2|chr10 (1350390-1350507) | |
| 298-435, gnl|hg17|chr15 (62197333-62197455) | |
| 298-435, gnl|Hg17|chr15 (62197358-62197496) | |
| 298-435, gnl|loxAfr1|scaffold_29611 (7437-7558) | |
| 298-435, gnl|mm7|chr9 (66135314-66135205) | |
| 298-435, gnl|Mm7|chr9 (66135298-66135162) | |
| 298-435, gnl|monDom2|scaffold_12 (49390605-49390484) | |
| 298-435, gnl|oryCun1|scaffold_199548 (61698-61611) | |
| 298-435, gnl|panTro1|chr16 (62660467-62660589) | |
| 298-435, gnl|rheMac2|chr7 (42510726-42510848) | |
| 298-435, gnl|rn3|chr8 (70406183-70406063) | |
| 298-435, gnl|tetNig1|chr13 (8010005-8010106) | |
| 545-689, gnl|bosTau2|chr10 (30119371-30119515) | |
| 545-689, gnl|canFam2|chr30 (31624332-31624512) | |
| 545-689, gnl|danRer3|chr25 (4671375-4671207) | |
| 545-689, gnl|dasNov1|scaffold_13084 (12611-12792) | |
| 545-689, gnl|echTel1|scaffold_310842 (54902-54712) | |
| 545-689, gnl|fr1|chrUn (14323633-14323473) | |
| 545-689, gnl|galGal2|chr10 (1353551-1353732) | |
| 545-689, gnl|hg17|chr15 (62205296-62205477) | |
| 545-689, gnl|Hg17|chr15 (62205329-62205473) | |
| 545-689, gnl|loxAfr1|scaffold_29611 (13295-13475) | |
| 545-689, gnl|mm7|chr9 (66128147-66127969) | |
| 545-689, gnl|Mm7|chr9 (66128115-66127971) | |
| 545-689, gnl|monDom2|scaffold_12 (49384675-49384497) | |
| 545-689, gnl|oryCun1|scaffold_189709 (22232-22051) | |
| 545-689, gnl|panTro1|chr16 (62668453-62668634) | |
| 545-689, gnl|rheMac2|chr7 (42518640-42518825) | |
| 545-689, gnl|rn3|chr8 (70398665-70398487) | |
| 545-689, gnl|tetNig1|chr5 (10813230-10813039) | |
| 545-689, gnl|xenTro1|scaffold_295 (409563-409384) | |
| 842-957, gnl|bosTau2|chr10 (30123044-30123159) | |
| 842-957, gnl|canFam2|chr30 (31628371-31628526) | |
| 842-957, gnl|danRer3|chr25 (4668547-4668416) | |
| 842-957, gnl|dasNov1|scaffold_13084 (18551-18707) | |
| 842-957, gnl|echTel1|scaffold_296267 (8210-8069) | |
| 842-957, gnl|fr1|chrUn (14323097-14322923) | |
| 842-957, gnl|galGal2|chr10 (1355672-1355803) | |
| 842-957, gnl|hg17|chr15 (62209139-62209295) | |
| 842-957, gnl|Hg17|chr15 (62209166-62209281) | |
| 842-957, gnl|loxAfr1|scaffold_29611 (20626-20782) | |
| 842-957, gnl|mm7|chr9 (66124402-66124257) | |
| 842-957, gnl|Mm7|chr9 (66124378-66124263) | |
| 842-957, gnl|monDom2|scaffold_12 (49381462-49381306) | |
| 842-957, gnl|oryCun1|scaffold_192746 (4271-4424) | |
| 842-957, gnl|panTro1|chr16 (62672299-62672455) | |
| 842-957, gnl|rheMac2|chr7 (42522391-42522547) | |
| 842-957, gnl|rn3|chr8 (70395700-70395549) | |
| 842-957, gnl|tetNig1|chr5 (10812634-10812506) | |
| 842-957, gnl|xenTro1|scaffold_295 (403526-403384) | |
| 1050-1258, gnl|bosTau2|chr10 (30124553-30124761) | |
| 1050-1258, gnl|Hg17|chr15 (62210937-62211145) | |
| 1050-1258, gnl|Mm7|chr9 (66123007-66122799) | |
| 1551-1988, gnl|bosTau2|chr10 (30129491-30129925) | |
| 1551-1988, gnl|Hg17|chr15 (62216816-62217255) | |
| 1551-1988, gnl|Mm7|chr9 (66118214-66117780) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-191, gnl|bosTau2|chr10 (30096088-30096278) | |
| 1-191, gnl|Hg17|chr15 (62175230-62175420) | |
| 1-191, gnl|Mm7|chr9 (66154442-66154252) | |
| 298-435, gnl|bosTau2|chr10 (30113168-30113305) | |
| 298-435, gnl|canFam2|chr30 (31615510-31615633) | |
| 298-435, gnl|danRer3|chr25 (4677818-4677729) | |
| 298-435, gnl|dasNov1|scaffold_13084 (3532-3653) | |
| 298-435, gnl|echTel1|scaffold_310842 (62702-62581) | |
| 298-435, gnl|fr1|chrUn (14324181-14324092) | |
| 298-435, gnl|galGal2|chr10 (1350390-1350507) | |
| 298-435, gnl|hg17|chr15 (62197333-62197455) | |
| 298-435, gnl|Hg17|chr15 (62197358-62197496) | |
| 298-435, gnl|loxAfr1|scaffold_29611 (7437-7558) | |
| 298-435, gnl|mm7|chr9 (66135314-66135205) | |
| 298-435, gnl|Mm7|chr9 (66135298-66135162) | |
| 298-435, gnl|monDom2|scaffold_12 (49390605-49390484) | |
| 298-435, gnl|oryCun1|scaffold_199548 (61698-61611) | |
| 298-435, gnl|panTro1|chr16 (62660467-62660589) | |
| 298-435, gnl|rheMac2|chr7 (42510726-42510848) | |
| 298-435, gnl|rn3|chr8 (70406183-70406063) | |
| 298-435, gnl|tetNig1|chr13 (8010005-8010106) | |
| 545-689, gnl|bosTau2|chr10 (30119371-30119515) | |
| 545-689, gnl|canFam2|chr30 (31624332-31624512) | |
| 545-689, gnl|danRer3|chr25 (4671375-4671207) | |
| 545-689, gnl|dasNov1|scaffold_13084 (12611-12792) | |
| 545-689, gnl|echTel1|scaffold_310842 (54902-54712) | |
| 545-689, gnl|fr1|chrUn (14323633-14323473) | |
| 545-689, gnl|galGal2|chr10 (1353551-1353732) | |
| 545-689, gnl|hg17|chr15 (62205296-62205477) | |
| 545-689, gnl|Hg17|chr15 (62205329-62205473) | |
| 545-689, gnl|loxAfr1|scaffold_29611 (13295-13475) | |
| 545-689, gnl|mm7|chr9 (66128147-66127969) | |
| 545-689, gnl|Mm7|chr9 (66128115-66127971) | |
| 545-689, gnl|monDom2|scaffold_12 (49384675-49384497) | |
| 545-689, gnl|oryCun1|scaffold_189709 (22232-22051) | |
| 545-689, gnl|panTro1|chr16 (62668453-62668634) | |
| 545-689, gnl|rheMac2|chr7 (42518640-42518825) | |
| 545-689, gnl|rn3|chr8 (70398665-70398487) | |
| 545-689, gnl|tetNig1|chr5 (10813230-10813039) | |
| 545-689, gnl|xenTro1|scaffold_295 (409563-409384) | |
| 842-957, gnl|bosTau2|chr10 (30123044-30123159) | |
| 842-957, gnl|canFam2|chr30 (31628371-31628526) | |
| 842-957, gnl|danRer3|chr25 (4668547-4668416) | |
| 842-957, gnl|dasNov1|scaffold_13084 (18551-18707) | |
| 842-957, gnl|echTel1|scaffold_296267 (8210-8069) | |
| 842-957, gnl|fr1|chrUn (14323097-14322923) | |
| 842-957, gnl|galGal2|chr10 (1355672-1355803) | |
| 842-957, gnl|hg17|chr15 (62209139-62209295) | |
| 842-957, gnl|Hg17|chr15 (62209166-62209281) | |
| 842-957, gnl|loxAfr1|scaffold_29611 (20626-20782) | |
| 842-957, gnl|mm7|chr9 (66124402-66124257) | |
| 842-957, gnl|Mm7|chr9 (66124378-66124263) | |
| 842-957, gnl|monDom2|scaffold_12 (49381462-49381306) | |
| 842-957, gnl|oryCun1|scaffold_192746 (4271-4424) | |
| 842-957, gnl|panTro1|chr16 (62672299-62672455) | |
| 842-957, gnl|rheMac2|chr7 (42522391-42522547) | |
| 842-957, gnl|rn3|chr8 (70395700-70395549) | |
| 842-957, gnl|tetNig1|chr5 (10812634-10812506) | |
| 842-957, gnl|xenTro1|scaffold_295 (403526-403384) | |
| 1050-1258, gnl|bosTau2|chr10 (30124553-30124761) | |
| 1050-1258, gnl|Hg17|chr15 (62210937-62211145) | |
| 1050-1258, gnl|Mm7|chr9 (66123007-66122799) | |
| 1551-1988, gnl|bosTau2|chr10 (30129491-30129925) | |
| 1551-1988, gnl|Hg17|chr15 (62216816-62217255) | |
| 1551-1988, gnl|Mm7|chr9 (66118214-66117780) |
| Expressed library(ies): 32 entry(ies) | More info |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
| cki (0.495704) | |
| cty (0.41632) | |
| elu (0.385356) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| cst (0.280073) | |
| che (0.272628) | |
| pla (0.267344) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 32 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| cty (0.41632) | |
| elu (0.385356) | |
| cte (0.29274) | |
| ldo (0.291008) | |
| cst (0.280073) | |
| che (0.272628) | |
| pla (0.267344) | |
| fli (0.202881) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| fty (0.17584) | |
| sin (0.174948) | |
| duo (0.172801) | |
| eye (0.170503) | |
| cut (0.169924) | |
| lun (0.150489) | |
| pty (0.142714) | |
| csk (0.140746) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| bla (0.124347) | |
| tra (0.123092) | |
| eep (0.122564) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) |