Non-Coding RNA Search

Ss1.1-Pig4-TMW8024B20.5

Sequence:


               
               CTGGTGTCAGTGCTGCCCCCACACCTGCTGCTGTTACGTCAGGTGCCCCTGCTGCCCGGA
CAAATGCTGCTGCCCAGAGGCCCTGTATGCTGCAGGCAAAGCGGCCACCTCAGGCGTCCC
AAGCATCTACGCCCCCAGCACCTATGCCCACCTCGCCCCTGCCAAGACCCCGCCCCCGCC
GGCCATGATTCCCATGGGCCCCCTCTACAACGGCTACTCTGGAGACTTCGACAGGAATAG
CTCAGTCGGTGGCCACAGTTCCCAGGTGCCCCTGCTTCGCGACACAGACAGCAACATGAC
CTCTGACATCCGGAGCGGCTATAGGATTCAGGCCAACCAGCAGGACGACTCCATGAGGGT
GCTGTACTACATGGAGAAGGAACTGGCCAACTTCGACCCTTCTCGGCCTGGTCCCCCCAA
TGGCCGTGTAGAGCGAGCCATGAGTGAAGTCACCTCCCTCCATGAGGACGACTGGAGATC
CCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAATGGAGTCACCATTC
CCCCCGGAGTTCCAGGAGGTGGGAACAAGAACCCCCCATGGAACGGCCAGGGAGTGGCTG
GGGGGCTGGGCGGCCCCGAGCCCGCTCTGTGGATGCTCTGGATGACCTCACCCGGCCCAA
CTCGGCTGAATCAGGGAGGAGGTCTCCCCCAAGTAGTGGGAGGAGAGGCCGGGCCTATGC
ACCTCCCCGAAGCCGCAGCCGTGATGACCTCTATGACCAAGACGACTCAAGGCACTTTCC
ACAGTCCCGGGATCCCCACTACGATGACTTCAGGTCTAGAGACCGCCCTCAGGCTGACCC
TAGGGCCCGTTACAACCGCTCCCGAGATCCTCGGGATGATGGTTCCAGGTCCAGGGACCC
CGAATACGATGGGCGGCTACTGGAAGAGGCCTTGAGGAGAAAGGGGCCTGTGGAGAGAAG
GAGACCTTACAGGGATGAAGAGGAAGAAGAGGAGGCCTGCTTCCCTCCAGCGCCTCCCCC
TTACTCTGAGACTGACTCCCAGGCCTCGAGGGAGCGGAGGCTTAAGAAGAACTTGGCCCT
GAGTCGGGAAAGTTTAGTTGTCTGATCTCAACGTTTTGTATGTAGCTTTTGTACTTTTTT
TAATTTGAGGGACCATGGATCATCTTCCTCGCCTAAGACTAATAAAACTTGTGATCATAA
AAAAAAAAAAAAAAAAAAATTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGGTGTCAGTGCTGCCCCCACACCTGCTGCTGTTACGTCAGGTGCCCCTGCTGCCCGGA
CAAATGCTGCTGCCCAGAGGCCCTGTATGCTGCAGGCAAAGCGGCCACCTCAGGCGTCCC
AAGCATCTACGCCCCCAGCACCTATGCCCACCTCGCCCCTGCCAAGACCCCGCCCCCGCC
GGCCATGATTCCCATGGGCCCCCTCTACAACGGCTACTCTGGAGACTTCGACAGGAATAG
CTCAGTCGGTGGCCACAGTTCCCAGGTGCCCCTGCTTCGCGACACAGACAGCAACATGAC
CTCTGACATCCGGAGCGGCTATAGGATTCAGGCCAACCAGCAGGACGACTCCATGAGGGT
GCTGTACTACATGGAGAAGGAACTGGCCAACTTCGACCCTTCTCGGCCTGGTCCCCCCAA
TGGCCGTGTAGAGCGAGCCATGAGTGAAGTCACCTCCCTCCATGAGGACGACTGGAGATC
CCGGCCTTCCCGGGGCCCTGCCCTCACCCCGATCCGGGATGAGGAATGGAGTCACCATTC
CCCCCGGAGTTCCAGGAGGTGGGAACAAGAACCCCCCATGGAACGGCCAGGGAGTGGCTG
GGGGGCTGGGCGGCCCCGAGCCCGCTCTGTGGATGCTCTGGATGACCTCACCCGGCCCAA
CTCGGCTGAATCAGGGAGGAGGTCTCCCCCAAGTAGTGGGAGGAGAGGCCGGGCCTATGC
ACCTCCCCGAAGCCGCAGCCGTGATGACCTCTATGACCAAGACGACTCAAGGCACTTTCC
ACAGTCCCGGGATCCCCACTACGATGACTTCAGGTCTAGAGACCGCCCTCAGGCTGACCC
TAGGGCCCGTTACAACCGCTCCCGAGATCCTCGGGATGATGGTTCCAGGTCCAGGGACCC
CGAATACGATGGGCGGCTACTGGAAGAGGCCTTGAGGAGAAAGGGGCCTGTGGAGAGAAG
GAGACCTTACAGGGATGAAGAGGAAGAAGAGGAGGCCTGCTTCCCTCCAGCGCCTCCCCC
TTACTCTGAGACTGACTCCCAGGCCTCGAGGGAGCGGAGGCTTAAGAAGAACTTGGCCCT
GAGTCGGGAAAGTTTAGTTGTCTGATCTCAACGTTTTGTATGTAGCTTTTGTACTTTTTT
TAATTTGAGGGACCATGGATCATCTTCCTCGCCTAAGACTAATAAAACTTGTGATCATAA
AAAAAAAAAAAAAAAAAAATTCCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               O00112_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               O00112_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               436-634, - strand, RNAz p=0.999424
               

               
               906-1022, - strand, RNAz p=0.882538

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               436-634, - strand, RNAz p=0.999424
               

               
               906-1022, - strand, RNAz p=0.882538

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               86-245, gnl|bosTau2|chr18 (39794929-39794770)
               

               
               86-245, gnl|Hg17|chr19 (40449104-40449275)
               

               
               86-245, gnl|Mm7|chr7 (27899092-27898933)
               


               
               436-1069, gnl|bosTau2|chr18 (39794038-39793405)
               

               
               436-1069, gnl|Hg17|chr19 (40449850-40450477)
               

               
               436-1069, gnl|Mm7|chr7 (27898402-27897769)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-245, gnl|bosTau2|chr18 (39794929-39794770)
               

               
               86-245, gnl|Hg17|chr19 (40449104-40449275)
               

               
               86-245, gnl|Mm7|chr7 (27899092-27898933)
               


               
               436-1069, gnl|bosTau2|chr18 (39794038-39793405)
               

               
               436-1069, gnl|Hg17|chr19 (40449850-40450477)
               

               
               436-1069, gnl|Mm7|chr7 (27898402-27897769)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               fce (0.271592)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               duo (0.172801)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               ute (0.132784)
               

               
               jej (0.0989218)

	436-634, - strand, RNAz p=0.999424
	906-1022, - strand, RNAz p=0.882538

	86-245, gnl\|bosTau2\|chr18 (39794929-39794770)
	86-245, gnl\|Hg17\|chr19 (40449104-40449275)
	86-245, gnl\|Mm7\|chr7 (27899092-27898933)

	436-1069, gnl\|bosTau2\|chr18 (39794038-39793405)
	436-1069, gnl\|Hg17\|chr19 (40449850-40450477)
	436-1069, gnl\|Mm7\|chr7 (27898402-27897769)

	fce (0.271592)
	col (0.195008)
	duo (0.172801)
	nje (0.16592)
	cje (0.165235)
	cki (0.165235)
	ute (0.132784)
	jej (0.0989218)