Ss1.1-Pig4-TMW8024C15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGACATGAGCAGCGGGGCGGCGTCCGGGACAGGGCGGGGGCGGCCCCGGGGCGGGGGGC CGGGACCCGGGGACCCCCCACCCAGCGAGACACACAAGCTGGTGGTCGTGGGCGGCGGCG GCGTGGGCAAGAGCGCGCTGACCATCCAGTTCATCCAGTCCTACTTCGTGTCTGACTACG ATCCCACTATTGAAGACTCCTACACCAAGATCTGCACCGTGGATGGCGTCCCGGCCCGGC TGGACATCCTGGACACCGCAGGCCAGGAGGAGTTCGGTGCCATGCGAGAGCAGTACATGC GCGCCGGCCACGGCTTCCTGCTGGTGTTTGCCATTAATGATCGGCAGAGTTTCAACGAGG TGGGCAAGCTCTTCACGCAGATCCTCCGAGTCAAGGACCGAGATGACTTCCCCATCGTGT TGGTCGGGAACAAGGCAGATCTGGAGACACAGCGTCAGGTTCCCAGATCCGAAGCCTCGG CCTTCAGCAACTCCCACCACGTGGCCTACTTCGAGGCCTCGGCCAAACTGCGCCTCAACG TGGACGAGGCCTTTGAGCAGCTGGTGCGCGCCGTCCGGAAGTTCCAGGAACAGGAGCTCC CACCCAGCCCGCCCAGCGCCCCCAGGAAGAAGGACAGGAGCTGCCCCTGCATCCTCCTGT AGGGAGGGGACGGGAGCAACAGGCACGGGCTCTTGGGACCACATGCCCTCGCCGAGCTTG CCCTCCGGGCCTCCCAGGACACACTACACCCCCACCTGGCCTCCTCCGGGCCACCACCAC GGCCATCACCACCGTGTGCCTTCTGCCACCGCCTCCCATCCCGCCCCAGCCCCTGGGTGA GGGCTCCCGGGCATCCGGATCACTGCTGTACATAACCTCCTCCCCCAGAGAAATAAACAT CACTCACTGCCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGACATGAGCAGCGGGGCGGCGTCCGGGACAGGGCGGGGGCGGCCCCGGGGCGGGGGGC CGGGACCCGGGGACCCCCCACCCAGCGAGACACACAAGCTGGTGGTCGTGGGCGGCGGCG GCGTGGGCAAGAGCGCGCTGACCATCCAGTTCATCCAGTCCTACTTCGTGTCTGACTACG ATCCCACTATTGAAGACTCCTACACCAAGATCTGCACCGTGGATGGCGTCCCGGCCCGGC TGGACATCCTGGACACCGCAGGCCAGGAGGAGTTCGGTGCCATGCGAGAGCAGTACATGC GCGCCGGCCACGGCTTCCTGCTGGTGTTTGCCATTAATGATCGGCAGAGTTTCAACGAGG TGGGCAAGCTCTTCACGCAGATCCTCCGAGTCAAGGACCGAGATGACTTCCCCATCGTGT TGGTCGGGAACAAGGCAGATCTGGAGACACAGCGTCAGGTTCCCAGATCCGAAGCCTCGG CCTTCAGCAACTCCCACCACGTGGCCTACTTCGAGGCCTCGGCCAAACTGCGCCTCAACG TGGACGAGGCCTTTGAGCAGCTGGTGCGCGCCGTCCGGAAGTTCCAGGAACAGGAGCTCC CACCCAGCCCGCCCAGCGCCCCCAGGAAGAAGGACAGGAGCTGCCCCTGCATCCTCCTGT AGGGAGGGGACGGGAGCAACAGGCACGGGCTCTTGGGACCACATGCCCTCGCCGAGCTTG CCCTCCGGGCCTCCCAGGACACACTACACCCCCACCTGGCCTCCTCCGGGCCACCACCAC GGCCATCACCACCGTGTGCCTTCTGCCACCGCCTCCCATCCCGCCCCAGCCCCTGGGTGA GGGCTCCCGGGCATCCGGATCACTGCTGTACATAACCTCCTCCCCCAGAGAAATAAACAT CACTCACTGCCCAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 100-597, gnl|bosTau2|chr7 (17736495-17736988) | |
| 100-597, gnl|canFam2|chr20 (59615056-59614445) | |
| 100-597, gnl|danRer3|chr15 (5161157-5160569) | |
| 100-597, gnl|dasNov1|scaffold_13108 (20433-21046) | |
| 100-597, gnl|echTel1|scaffold_87313 (1490-885) | |
| 100-597, gnl|fr1|chrUn (284568005-284567320) | |
| 100-597, gnl|galGal2|chrUn (59891849-59892451) | |
| 100-597, gnl|hg17|chr19 (2668203-2668814) | |
| 100-597, gnl|Hg17|chr19 (2668776-2668283) | |
| 100-597, gnl|loxAfr1|scaffold_69023 (7480-8085) | |
| 100-597, gnl|mm7|chr10 (80813809-80814420) | |
| 100-597, gnl|Mm7|chr10 (80814382-80813889) | |
| 100-597, gnl|monDom2|scaffold_75 (5287125-5287734) | |
| 100-597, gnl|oryCun1|scaffold_179803 (136713-137325) | |
| 100-597, gnl|panTro1|chr20 (2794141-2794752) | |
| 100-597, gnl|rheMac2|chr19 (2547331-2547942) | |
| 100-597, gnl|rn3|chr7 (10175392-10174781) | |
| 100-597, gnl|tetNig1|chr10 (8731104-8731780) | |
| 100-597, gnl|xenTro1|scaffold_868 (332522-331919) | |
| 110-443, gnl|bosTau2|chr13 (39626026-39626357) | |
| 456-578, gnl|bosTau2|chr18 (48727468-48727346) | |
| 456-578, gnl|Hg17|chr19 (54830924-54830802) | |
| 456-578, gnl|Mm7|chr7 (41196812-41196934) | |
| 690-904, gnl|bosTau2|chr18 (48727187-48726967) | |
| 690-904, gnl|Hg17|chr19 (54830650-54830371) | |
| 690-904, gnl|Mm7|chr7 (41197087-41197366) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 100-597, gnl|bosTau2|chr7 (17736495-17736988) | |
| 100-597, gnl|canFam2|chr20 (59615056-59614445) | |
| 100-597, gnl|danRer3|chr15 (5161157-5160569) | |
| 100-597, gnl|dasNov1|scaffold_13108 (20433-21046) | |
| 100-597, gnl|echTel1|scaffold_87313 (1490-885) | |
| 100-597, gnl|fr1|chrUn (284568005-284567320) | |
| 100-597, gnl|galGal2|chrUn (59891849-59892451) | |
| 100-597, gnl|hg17|chr19 (2668203-2668814) | |
| 100-597, gnl|Hg17|chr19 (2668776-2668283) | |
| 100-597, gnl|loxAfr1|scaffold_69023 (7480-8085) | |
| 100-597, gnl|mm7|chr10 (80813809-80814420) | |
| 100-597, gnl|Mm7|chr10 (80814382-80813889) | |
| 100-597, gnl|monDom2|scaffold_75 (5287125-5287734) | |
| 100-597, gnl|oryCun1|scaffold_179803 (136713-137325) | |
| 100-597, gnl|panTro1|chr20 (2794141-2794752) | |
| 100-597, gnl|rheMac2|chr19 (2547331-2547942) | |
| 100-597, gnl|rn3|chr7 (10175392-10174781) | |
| 100-597, gnl|tetNig1|chr10 (8731104-8731780) | |
| 100-597, gnl|xenTro1|scaffold_868 (332522-331919) | |
| 110-443, gnl|bosTau2|chr13 (39626026-39626357) | |
| 456-578, gnl|bosTau2|chr18 (48727468-48727346) | |
| 456-578, gnl|Hg17|chr19 (54830924-54830802) | |
| 456-578, gnl|Mm7|chr7 (41196812-41196934) | |
| 690-904, gnl|bosTau2|chr18 (48727187-48726967) | |
| 690-904, gnl|Hg17|chr19 (54830650-54830371) | |
| 690-904, gnl|Mm7|chr7 (41197087-41197366) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cbr (1.91963) | |
| nlu (0.766724) | |
| mas (0.42061) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| jca (0.34188) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbr (1.91963) | |
| nlu (0.766724) | |
| mas (0.42061) | |
| cov (0.396458) | |
| elu (0.385356) | |
| nep (0.36785) | |
| jca (0.34188) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| nco (0.161734) | |
| csp (0.161186) | |
| cag (0.151194) | |
| nca (0.136874) | |
| ese (0.126502) | |
| bla (0.124347) | |
| cly (0.120642) |