Non-Coding RNA Search

Ss1.1-Pig4-TMW8024C24.3

Sequence:


               
               TGAACAGTAGGTTTGGGTCCAAGACCATTTGAAGCATTACAGACTCTTTCATAGAAAAGG
AAAAAAGGAAGAAGTCTGCTTAAAATGAATGCAAAATTTGCTTATAGTCCATCACATTTA
GATTCTTGGATGTGACCTGTTACCGGTATCACAGAGAAGCCCAAATCACTATTTAGGTCA
AAACATTCTTCATGTGGGTAACTGTAAGAAGCTAGAGCCTACACATTGCTCCTTCAAGCC
TTGTTGGGGGCCTCTGAAAGCACTGGCAAAGAGTCTTTCTCAGGGTAACAATGTTTTCAG
CTACAAATTCGTTCCAGATAAATTGTCTTCCCTTCTAAAATTAGTCTTAGGAAAGAAATC
TAGCACGTTGTCATTGATTTAGGCTATTTTCTGTATTCAGAAGCGATTTTAATCTTTTCA
GAGTTAATGCTCTGCCATGAAAACTATTTTTCAAATCCTCTTTAGTGGTAACATTTTTTT
CAACTGAAGGTCAAAGGATTGGAAACAGGTCATTTTTTTTTTTTTTCTTGTATACATGTA
TTATGTAAAAAAAAGTATTCGTATTGATGATTTTAGTTCAGCAGAATGGTGTGGTTGAAA
TTTTTAAAACTTGATTCAGTGTTTTATCTGATTAAAGCAAGCAAGGATCAGAGTATCTCC
TAAGAGGTAATTTACCTTCTGTTCCCTTCCAGTAATCCTTACATTCTAAGTTTTCATCTC
TGAGAAATAACAAGAAGGGAGAAAAATTACATTAGGGGATAATCTAATCTTTGTTGTTTA
AATGGTGTGACTTCTCACCATCAAAAGCCATTTTTCTAGCCTCAGAGAGAGGAAATAATG
CCTCTACCATTTTCTACCTGGTGACTTGAAAATTGAAGTTTTAGTTAGGAAGTCACTTAG
CGTCAGGGAACTTGTATACCACTATCTATGCAGCATTGTTATATAGTCTGATTATTTCTA
TGTTTTGAGTATGATTTTCCTAATGTTCTGAATAAAATTTTGTCAAAAATTAATTTTTGA
CATATAATGTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACAGTAGGTTTGGGTCCAAGACCATTTGAAGCATTACAGACTCTTTCATAGAAAAGG
AAAAAAGGAAGAAGTCTGCTTAAAATGAATGCAAAATTTGCTTATAGTCCATCACATTTA
GATTCTTGGATGTGACCTGTTACCGGTATCACAGAGAAGCCCAAATCACTATTTAGGTCA
AAACATTCTTCATGTGGGTAACTGTAAGAAGCTAGAGCCTACACATTGCTCCTTCAAGCC
TTGTTGGGGGCCTCTGAAAGCACTGGCAAAGAGTCTTTCTCAGGGTAACAATGTTTTCAG
CTACAAATTCGTTCCAGATAAATTGTCTTCCCTTCTAAAATTAGTCTTAGGAAAGAAATC
TAGCACGTTGTCATTGATTTAGGCTATTTTCTGTATTCAGAAGCGATTTTAATCTTTTCA
GAGTTAATGCTCTGCCATGAAAACTATTTTTCAAATCCTCTTTAGTGGTAACATTTTTTT
CAACTGAAGGTCAAAGGATTGGAAACAGGTCATTTTTTTTTTTTTTCTTGTATACATGTA
TTATGTAAAAAAAAGTATTCGTATTGATGATTTTAGTTCAGCAGAATGGTGTGGTTGAAA
TTTTTAAAACTTGATTCAGTGTTTTATCTGATTAAAGCAAGCAAGGATCAGAGTATCTCC
TAAGAGGTAATTTACCTTCTGTTCCCTTCCAGTAATCCTTACATTCTAAGTTTTCATCTC
TGAGAAATAACAAGAAGGGAGAAAAATTACATTAGGGGATAATCTAATCTTTGTTGTTTA
AATGGTGTGACTTCTCACCATCAAAAGCCATTTTTCTAGCCTCAGAGAGAGGAAATAATG
CCTCTACCATTTTCTACCTGGTGACTTGAAAATTGAAGTTTTAGTTAGGAAGTCACTTAG
CGTCAGGGAACTTGTATACCACTATCTATGCAGCATTGTTATATAGTCTGATTATTTCTA
TGTTTTGAGTATGATTTTCCTAATGTTCTGAATAAAATTTTGTCAAAAATTAATTTTTGA
CATATAATGTGC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               715-829, - strand, RNAz p=0.510882

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               715-829, - strand, RNAz p=0.510882

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-1024, gnl|bosTau2|chr4 (27322118-27323164)
               

               
               1-1024, gnl|canFam2|chr14 (55273658-55274744)
               

               
               1-1024, gnl|dasNov1|scaffold_109194 (4508-3375)
               

               
               1-1024, gnl|echTel1|scaffold_318913 (44671-43524)
               

               
               1-1024, gnl|hg17|chr7 (111999643-112000754)
               

               
               1-1024, gnl|Hg17|chr7 (112000767-111999724)
               

               
               1-1024, gnl|loxAfr1|scaffold_12875 (32191-31068)
               

               
               1-1024, gnl|mm7|chr6 (13522303-13523374)
               

               
               1-1024, gnl|Mm7|chr6 (13523389-13522388)
               

               
               1-1024, gnl|monDom2|scaffold_22 (37659955-37658927)
               

               
               1-1024, gnl|oryCun1|scaffold_176892 (60763-61849)
               

               
               1-1024, gnl|panTro1|chr6 (114015901-114016998)
               

               
               1-1024, gnl|rheMac2|chr3 (150155629-150156719)
               

               
               1-1024, gnl|rn3|chr4 (39130837-39131901)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1024, gnl|bosTau2|chr4 (27322118-27323164)
               

               
               1-1024, gnl|canFam2|chr14 (55273658-55274744)
               

               
               1-1024, gnl|dasNov1|scaffold_109194 (4508-3375)
               

               
               1-1024, gnl|echTel1|scaffold_318913 (44671-43524)
               

               
               1-1024, gnl|hg17|chr7 (111999643-112000754)
               

               
               1-1024, gnl|Hg17|chr7 (112000767-111999724)
               

               
               1-1024, gnl|loxAfr1|scaffold_12875 (32191-31068)
               

               
               1-1024, gnl|mm7|chr6 (13522303-13523374)
               

               
               1-1024, gnl|Mm7|chr6 (13523389-13522388)
               

               
               1-1024, gnl|monDom2|scaffold_22 (37659955-37658927)
               

               
               1-1024, gnl|oryCun1|scaffold_176892 (60763-61849)
               

               
               1-1024, gnl|panTro1|chr6 (114015901-114016998)
               

               
               1-1024, gnl|rheMac2|chr3 (150155629-150156719)
               

               
               1-1024, gnl|rn3|chr4 (39130837-39131901)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               lun (0.150489)
               

               
               lnt (0.142308)
               

               
               nmm (0.132802)
               

               
               tra (0.123092)
               

               
               ldo (0.0970026)

	1-1024, gnl\|bosTau2\|chr4 (27322118-27323164)
	1-1024, gnl\|canFam2\|chr14 (55273658-55274744)
	1-1024, gnl\|dasNov1\|scaffold_109194 (4508-3375)
	1-1024, gnl\|echTel1\|scaffold_318913 (44671-43524)
	1-1024, gnl\|hg17\|chr7 (111999643-112000754)
	1-1024, gnl\|Hg17\|chr7 (112000767-111999724)
	1-1024, gnl\|loxAfr1\|scaffold_12875 (32191-31068)
	1-1024, gnl\|mm7\|chr6 (13522303-13523374)
	1-1024, gnl\|Mm7\|chr6 (13523389-13522388)
	1-1024, gnl\|monDom2\|scaffold_22 (37659955-37658927)
	1-1024, gnl\|oryCun1\|scaffold_176892 (60763-61849)
	1-1024, gnl\|panTro1\|chr6 (114015901-114016998)
	1-1024, gnl\|rheMac2\|chr3 (150155629-150156719)
	1-1024, gnl\|rn3\|chr4 (39130837-39131901)

	mcp (0.170648)
	lun (0.150489)
	lnt (0.142308)
	nmm (0.132802)
	tra (0.123092)
	ldo (0.0970026)