Non-Coding RNA Search

Ss1.1-Pig4-TMW8024D20.5

Sequence:


               
               GAGGAGAGGAGCGTCAACAGCAGCACCATGGTAGCTCAACAGAAGAACCTTGAAGGCTAT
GTGGGATTTGCAAATCTCCCAAATCAAGTATACAGAAAATCAGTGAAGAGAGGGTTTGAA
TTCACACTTATGGTTGTGGGTGAATCTGGCCTGGGAAAGTCAACATTAATCAACTCATTA
TTCCTCACAGATTTGTATTCACCAGAGTATCCAGGTCCTTCCCATAGAATAAAAAAGACT
GTACAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTTACA
ATAGTTGACACCCCAGGATTTGGCGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTT
ATCGATTACATTGATAGTAAGTTTGAGGACTACCTAAATGCAGAATCTCGAGTGAACAGA
CGTCAGATGCCTGATAACAGGGTGCAGTGTTGTTTATACTTCATTGCTCCTTCAGGACAT
GGACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAAAGTGAATATCATT
CCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAGTGCCAACAGTTTAAAAAACAG
ATAATGAAAGAAATCCAAGAACATAAAATTAAAATATATGAATTTCCAGAGACAGATGAT
GAAGAAGAAAATAAGCTTGTTAAAAAGATAAAGGACCGTTTACCTCTTGCTGTGGTAGGT
AGTAATACTATCATTGAAGTTAATGGCAAAAGAGTCAGAGGAAGGCAGTATCCATGGGGT
GTTGCTGAAGTTGAAAATGGCGAACATTGTGATTTTACAATTCTAAGAAATATGTTGATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGAGAGGAGCGTCAACAGCAGCACCATGGTAGCTCAACAGAAGAACCTTGAAGGCTAT
GTGGGATTTGCAAATCTCCCAAATCAAGTATACAGAAAATCAGTGAAGAGAGGGTTTGAA
TTCACACTTATGGTTGTGGGTGAATCTGGCCTGGGAAAGTCAACATTAATCAACTCATTA
TTCCTCACAGATTTGTATTCACCAGAGTATCCAGGTCCTTCCCATAGAATAAAAAAGACT
GTACAGGTGGAACAATCCAAAGTTTTAATCAAAGAAGGTGGTGTTCAGTTGCTGCTTACA
ATAGTTGACACCCCAGGATTTGGCGATGCAGTGGATAATAGTAATTGCTGGCAGCCTGTT
ATCGATTACATTGATAGTAAGTTTGAGGACTACCTAAATGCAGAATCTCGAGTGAACAGA
CGTCAGATGCCTGATAACAGGGTGCAGTGTTGTTTATACTTCATTGCTCCTTCAGGACAT
GGACTTAAACCATTGGATATTGAGTTTATGAAGCGTTTGCATGAAAAAGTGAATATCATT
CCACTTATTGCCAAAGCAGACACACTCACACCAGAGGAGTGCCAACAGTTTAAAAAACAG
ATAATGAAAGAAATCCAAGAACATAAAATTAAAATATATGAATTTCCAGAGACAGATGAT
GAAGAAGAAAATAAGCTTGTTAAAAAGATAAAGGACCGTTTACCTCTTGCTGTGGTAGGT
AGTAATACTATCATTGAAGTTAATGGCAAAAGAGTCAGAGGAAGGCAGTATCCATGGGGT
GTTGCTGAAGTTGAAAATGGCGAACATTGTGATTTTACAATTCTAAGAAATATGTTGATA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62088934|dbj|BAD92914.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62088934|dbj|BAD92914.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               55-779, gnl|bosTau2|chr29 (1188199-1187465)
               

               
               55-779, gnl|Hg17|chr2 (241994530-242003242)
               

               
               55-779, gnl|Mm7|chr1 (93399002-93409401)
               


               
               330-673, gnl|bosTau2|chr20 (6120335-6120678)
               

               
               330-673, gnl|Hg17|chrX (21948529-21949455)
               

               
               330-673, gnl|Mm7|chrX (152030097-152029776)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-779, gnl|bosTau2|chr29 (1188199-1187465)
               

               
               55-779, gnl|Hg17|chr2 (241994530-242003242)
               

               
               55-779, gnl|Mm7|chr1 (93399002-93409401)
               


               
               330-673, gnl|bosTau2|chr20 (6120335-6120678)
               

               
               330-673, gnl|Hg17|chrX (21948529-21949455)
               

               
               330-673, gnl|Mm7|chrX (152030097-152029776)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               elu (0.385356)
               

               
               lnt (0.284616)
               

               
               fty (0.17584)
               

               
               nje (0.16592)
               

               
               jej (0.0989218)

	55-779, gnl\|bosTau2\|chr29 (1188199-1187465)
	55-779, gnl\|Hg17\|chr2 (241994530-242003242)
	55-779, gnl\|Mm7\|chr1 (93399002-93409401)

	330-673, gnl\|bosTau2\|chr20 (6120335-6120678)
	330-673, gnl\|Hg17\|chrX (21948529-21949455)
	330-673, gnl\|Mm7\|chrX (152030097-152029776)

	spl (0.429553)
	elu (0.385356)
	lnt (0.284616)
	fty (0.17584)
	nje (0.16592)
	jej (0.0989218)