Ss1.1-Pig4-TMW8024E01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTGAGGCAGGAGGAGGAGACCGGCCTGGGGCGGGCCCAGACCCCCCGGGCGCTCCGAG ACCCCCCTCAGGCCGCCTGGGTTCCGCCGCGTCACCGCGGCCGGTAGATGCCCAGGCCCG GCCAGAGTCCCTGCTTGCCCCCCCGCGCCCCCAGCCCGGCCTTGCCAGGTCCCCCCTGGG CCCAGCGCGGTGTCAGGGTCAGCAGTTCTCTCGGATCTCGGGACAGGTGAGCCCCCTGAT GAAGGCCACGGTCCTGATGCGGCAGCCCGGGCGGGTGCAGGAGATCGTGGGCGCCCTCCG CAAGGGCGGAGGAGACCGCTTACAGGTCATTTCTGATTTTGACATGACCTTGAGCAGGTT TGCATATAATGGAAAGCGATGCCCTTCTTCTTACAATATTCTGGATAACAGCAAGATCAT CAGTGAGGAGTGCCGGAAAGAGCTCAAAGCGCTTCTCCACCACTATTATCCAATTGAGAT TGACCCAGACCGGACCATCAAAGAGAAGTTACCCCACATGGTGGAGTGGTGGACCAAAGC ACATGATCTCCTGTGCCAGCAGAAGATTCAGAAGTTTCAGATAGCCCAGGTGGTGAGAGA ATCCAGCGCCATGCTTAGGGATGGCTACAAGACGTTCTTCCACACCCTCTCCCAGAACCA CGTTCCCCTTCTCATCTTTTCCGCGGGCATTGGCGATGTCCTGGAAGAGATTATTCGGCA GAGGAGAGTGTTCCACCCCAACATTCACGTTGTGTCTAACTACATGGAGTTTGACGAAGA GGGTTTCCTAAAGGGATTCAAGGGCCAGCTCATACACACCTACAACAAGAACAGCTCCGT GTGTGAGAATTCCACCTTCTTCCAGCAGCTTCAGGGCAAAACCAACATCCTCCTGCTGGG AGACTCCCTGGGGGACCTTACTATGGCCGATGGGGTTCCTGGTGTGGAGAACATTCTCAA GATCGGCTTCCTAAATGACAAGGTGGAAGAGTGGCGAGAGCGCTACATGGACTCCTATGA CATCGTGCTGGAGAAGGACGAGACACTGGACGTGGTCAACGGGCTGCTGCAGCACATCCT GCAGCAGGAGGACTGGACAGAGATGCAGGGCCCCTGAGGGCAGGCGCGAGGCCTGTGATG GAGAGGGAACCTCCGCCGAAGCTGCCCTGCTCTGAGCGCTGCTCCTCCCTGTGCGTGTAG AGCAGAGACAAGTCCTGGGTGGCGGGAGCAGCTGGCCCTCGCCCGTCCCTCCTTTTCCCG GCCCCTTCGTTTGTGTTCTCCAGAGGCTTGAGGGAGCCTTGCCAGGCGGGAGGGCAGCAA CAACCATTCCAGATGAACTGTGGACATACGTGGTTTTAGCCCTTTAGGAGTCATTTGGTC CAGGGATCCTTTTGTCCAGAAGTTTTCAACACGGGAAGCTATTCTTCAAACAAATCTGAT ATGTGAAATAAACCAAAATAAAAAAAAGGACAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTGAGGCAGGAGGAGGAGACCGGCCTGGGGCGGGCCCAGACCCCCCGGGCGCTCCGAG ACCCCCCTCAGGCCGCCTGGGTTCCGCCGCGTCACCGCGGCCGGTAGATGCCCAGGCCCG GCCAGAGTCCCTGCTTGCCCCCCCGCGCCCCCAGCCCGGCCTTGCCAGGTCCCCCCTGGG CCCAGCGCGGTGTCAGGGTCAGCAGTTCTCTCGGATCTCGGGACAGGTGAGCCCCCTGAT GAAGGCCACGGTCCTGATGCGGCAGCCCGGGCGGGTGCAGGAGATCGTGGGCGCCCTCCG CAAGGGCGGAGGAGACCGCTTACAGGTCATTTCTGATTTTGACATGACCTTGAGCAGGTT TGCATATAATGGAAAGCGATGCCCTTCTTCTTACAATATTCTGGATAACAGCAAGATCAT CAGTGAGGAGTGCCGGAAAGAGCTCAAAGCGCTTCTCCACCACTATTATCCAATTGAGAT TGACCCAGACCGGACCATCAAAGAGAAGTTACCCCACATGGTGGAGTGGTGGACCAAAGC ACATGATCTCCTGTGCCAGCAGAAGATTCAGAAGTTTCAGATAGCCCAGGTGGTGAGAGA ATCCAGCGCCATGCTTAGGGATGGCTACAAGACGTTCTTCCACACCCTCTCCCAGAACCA CGTTCCCCTTCTCATCTTTTCCGCGGGCATTGGCGATGTCCTGGAAGAGATTATTCGGCA GAGGAGAGTGTTCCACCCCAACATTCACGTTGTGTCTAACTACATGGAGTTTGACGAAGA GGGTTTCCTAAAGGGATTCAAGGGCCAGCTCATACACACCTACAACAAGAACAGCTCCGT GTGTGAGAATTCCACCTTCTTCCAGCAGCTTCAGGGCAAAACCAACATCCTCCTGCTGGG AGACTCCCTGGGGGACCTTACTATGGCCGATGGGGTTCCTGGTGTGGAGAACATTCTCAA GATCGGCTTCCTAAATGACAAGGTGGAAGAGTGGCGAGAGCGCTACATGGACTCCTATGA CATCGTGCTGGAGAAGGACGAGACACTGGACGTGGTCAACGGGCTGCTGCAGCACATCCT GCAGCAGGAGGACTGGACAGAGATGCAGGGCCCCTGAGGGCAGGCGCGAGGCCTGTGATG GAGAGGGAACCTCCGCCGAAGCTGCCCTGCTCTGAGCGCTGCTCCTCCCTGTGCGTGTAG AGCAGAGACAAGTCCTGGGTGGCGGGAGCAGCTGGCCCTCGCCCGTCCCTCCTTTTCCCG GCCCCTTCGTTTGTGTTCTCCAGAGGCTTGAGGGAGCCTTGCCAGGCGGGAGGGCAGCAA CAACCATTCCAGATGAACTGTGGACATACGTGGTTTTAGCCCTTTAGGAGTCATTTGGTC CAGGGATCCTTTTGTCCAGAAGTTTTCAACACGGGAAGCTATTCTTCAAACAAATCTGAT ATGTGAAATAAACCAAAATAAAAAAAAGGACAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1060-1174, + strand, RNAz p=0.865747 | |
| 1096-1188, + strand, RNAz p=0.994874 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1060-1174, + strand, RNAz p=0.865747 | |
| 1096-1188, + strand, RNAz p=0.994874 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_052935, + |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 1-327, gnl|bosTau2|chr23 (133544-133870) | |
| 1-327, gnl|Hg17|chr17 (37245961-37245635) | |
| 617-780, gnl|bosTau2|chr23 (138787-138950) | |
| 617-780, gnl|canFam2|chr9 (24316465-24316353) | |
| 617-780, gnl|dasNov1|scaffold_7430 (75997-76105) | |
| 617-780, gnl|echTel1|scaffold_214366 (862-750) | |
| 617-780, gnl|fr1|chrUn (96654210-96654322) | |
| 617-780, gnl|galGal2|chr27_random (479581-479469) | |
| 617-780, gnl|hg17|chr17 (37238564-37238676) | |
| 617-780, gnl|Hg17|chr17 (37238732-37238569) | |
| 617-780, gnl|loxAfr1|scaffold_43844 (7300-7188) | |
| 617-780, gnl|mm7|chr11 (100541953-100542065) | |
| 617-780, gnl|Mm7|chr11 (100542121-100541958) | |
| 617-780, gnl|monDom2|scaffold_18 (52105805-52105917) | |
| 617-780, gnl|oryCun1|scaffold_146295 (865-977) | |
| 617-780, gnl|panTro1|chr19 (40438792-40438904) | |
| 617-780, gnl|rheMac2|chr16 (51924932-51925044) | |
| 617-780, gnl|rn3|chr10 (89389877-89389989) | |
| 617-780, gnl|tetNig1|chrUn_random (83298935-83299047) | |
| 617-780, gnl|xenTro1|scaffold_394 (756574-756686) | |
| 981-1474, gnl|bosTau2|chr23 (141075-141604) | |
| 981-1474, gnl|canFam2|chr9 (24318621-24318996) | |
| 981-1474, gnl|dasNov1|scaffold_59572 (4891-5310) | |
| 981-1474, gnl|echTel1|scaffold_214366 (2908-3287) | |
| 981-1474, gnl|hg17|chr13 (110470894-110471196) | |
| 981-1474, gnl|Hg17|chr17 (37235437-37234961) | |
| 981-1474, gnl|mm7|chr11 (100538984-100538614) | |
| 981-1474, gnl|oryCun1|scaffold_97476 (7438-7723) | |
| 981-1474, gnl|panTro1|chr14 (93902311-93902613) | |
| 981-1474, gnl|rheMac2|chr16 (51920933-51920579) | |
| 981-1474, gnl|rn3|chr10 (89385908-89385537) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-327, gnl|bosTau2|chr23 (133544-133870) | |
| 1-327, gnl|Hg17|chr17 (37245961-37245635) | |
| 617-780, gnl|bosTau2|chr23 (138787-138950) | |
| 617-780, gnl|canFam2|chr9 (24316465-24316353) | |
| 617-780, gnl|dasNov1|scaffold_7430 (75997-76105) | |
| 617-780, gnl|echTel1|scaffold_214366 (862-750) | |
| 617-780, gnl|fr1|chrUn (96654210-96654322) | |
| 617-780, gnl|galGal2|chr27_random (479581-479469) | |
| 617-780, gnl|hg17|chr17 (37238564-37238676) | |
| 617-780, gnl|Hg17|chr17 (37238732-37238569) | |
| 617-780, gnl|loxAfr1|scaffold_43844 (7300-7188) | |
| 617-780, gnl|mm7|chr11 (100541953-100542065) | |
| 617-780, gnl|Mm7|chr11 (100542121-100541958) | |
| 617-780, gnl|monDom2|scaffold_18 (52105805-52105917) | |
| 617-780, gnl|oryCun1|scaffold_146295 (865-977) | |
| 617-780, gnl|panTro1|chr19 (40438792-40438904) | |
| 617-780, gnl|rheMac2|chr16 (51924932-51925044) | |
| 617-780, gnl|rn3|chr10 (89389877-89389989) | |
| 617-780, gnl|tetNig1|chrUn_random (83298935-83299047) | |
| 617-780, gnl|xenTro1|scaffold_394 (756574-756686) | |
| 981-1474, gnl|bosTau2|chr23 (141075-141604) | |
| 981-1474, gnl|canFam2|chr9 (24318621-24318996) | |
| 981-1474, gnl|dasNov1|scaffold_59572 (4891-5310) | |
| 981-1474, gnl|echTel1|scaffold_214366 (2908-3287) | |
| 981-1474, gnl|hg17|chr13 (110470894-110471196) | |
| 981-1474, gnl|Hg17|chr17 (37235437-37234961) | |
| 981-1474, gnl|mm7|chr11 (100538984-100538614) | |
| 981-1474, gnl|oryCun1|scaffold_97476 (7438-7723) | |
| 981-1474, gnl|panTro1|chr14 (93902311-93902613) | |
| 981-1474, gnl|rheMac2|chr16 (51920933-51920579) | |
| 981-1474, gnl|rn3|chr10 (89385908-89385537) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| hyp (0.285673) | |
| tes (0.207814) | |
| sin (0.174948) | |
| ecc (0.115035) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.285673) | |
| tes (0.207814) | |
| sin (0.174948) | |
| ecc (0.115035) | |
| cty (0.10408) |