Non-Coding RNA Search

Ss1.1-Pig4-TMW8024E02.5

Sequence:


               
               CCCTGGACCGCCAGCCCTGTCGAGGCTTCTCCCGGGCGATGCCTCTGCTCTGGGCCCTGC
TGGCCCTTGGCTGCCTGCAACTTGGCTCGGGTGTCAACCTCCAGCCCCAACTGGCTAGTG
TGACGTTTGCCACCAACAACCCCACACTCACCACGGTGGCCTTGGAAAAGCCTCTCTGCA
TGTTTGACAGCTCAGCCGCCCTCCATGGCACCTACGAGGTCTATCTCTATGTCCTGGTCG
ACTCGGCCAGCTCCAGGAACGCCTCTGTGCAGGACAGCACCAAGACCCCGCTCAGCTCGA
CGCCCCAGGAAACAGAAGGAGGCAGGACTGGTCCCTACAAAGCTGCGGCCTTTGACCTGG
CCCCCTGCAGCGACCTGCCCAGCCTGGATGCCGTCAGGGATGTGTCCCAGGCCTCGGAGA
TCCTGAATGCATACCTGGTCAGGGTGGGCATCAATGGGACCTGCCTGTCTGACCCCAACT
TCCGGGGCCTCTGCAACCCACCCCTGTCAGCAGCTACGGAGTACAGGTTCAAGTACGTCC
TGGTCAATATATCCACGGGCTTGGTACAGGACCAGACCCTGTGGTCAGACCCCGTCCGCA
CCAACCGGCTCACCCCGTACTCGGCGATCGACACGTGGCCCGGCCGGCGGAGCGGGGGCA
TGATCGTTATCACGTCCATCCTGGGCTCCCTGCCCTTCTTCTTGCTCGTCGGCTTTGCGG
GCGCCATCGTCCTCAGCCTCATGGACATGGGCGGTGCGGACGGGGAAATGACCCACGACT
CCCAGATCACGCAGGAGGCCGTCCCCAAGGGGACCTCGGAGCCTTCATACACGTCTGTGA
ACCGGGGCCCGCCCCTGGACAGGGCTGAGGTGTACGCCAGCAAGCTCCAGGACTGAGCCG
GGGTGCCACTCCTGGCGGCTGCTGTCCCCTGACCCCACTCCAGGGAAACGGGGCGTGTTG
GTGCTGCTGCAGGAAAGCGCTCCATTACATCGTCCCAGGATTCTCGTTCAATAAAGACTG
AGGGAATGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTGGACCGCCAGCCCTGTCGAGGCTTCTCCCGGGCGATGCCTCTGCTCTGGGCCCTGC
TGGCCCTTGGCTGCCTGCAACTTGGCTCGGGTGTCAACCTCCAGCCCCAACTGGCTAGTG
TGACGTTTGCCACCAACAACCCCACACTCACCACGGTGGCCTTGGAAAAGCCTCTCTGCA
TGTTTGACAGCTCAGCCGCCCTCCATGGCACCTACGAGGTCTATCTCTATGTCCTGGTCG
ACTCGGCCAGCTCCAGGAACGCCTCTGTGCAGGACAGCACCAAGACCCCGCTCAGCTCGA
CGCCCCAGGAAACAGAAGGAGGCAGGACTGGTCCCTACAAAGCTGCGGCCTTTGACCTGG
CCCCCTGCAGCGACCTGCCCAGCCTGGATGCCGTCAGGGATGTGTCCCAGGCCTCGGAGA
TCCTGAATGCATACCTGGTCAGGGTGGGCATCAATGGGACCTGCCTGTCTGACCCCAACT
TCCGGGGCCTCTGCAACCCACCCCTGTCAGCAGCTACGGAGTACAGGTTCAAGTACGTCC
TGGTCAATATATCCACGGGCTTGGTACAGGACCAGACCCTGTGGTCAGACCCCGTCCGCA
CCAACCGGCTCACCCCGTACTCGGCGATCGACACGTGGCCCGGCCGGCGGAGCGGGGGCA
TGATCGTTATCACGTCCATCCTGGGCTCCCTGCCCTTCTTCTTGCTCGTCGGCTTTGCGG
GCGCCATCGTCCTCAGCCTCATGGACATGGGCGGTGCGGACGGGGAAATGACCCACGACT
CCCAGATCACGCAGGAGGCCGTCCCCAAGGGGACCTCGGAGCCTTCATACACGTCTGTGA
ACCGGGGCCCGCCCCTGGACAGGGCTGAGGTGTACGCCAGCAAGCTCCAGGACTGAGCCG
GGGTGCCACTCCTGGCGGCTGCTGTCCCCTGACCCCACTCCAGGGAAACGGGGCGTGTTG
GTGCTGCTGCAGGAAAGCGCTCCATTACATCGTCCCAGGATTCTCGTTCAATAAAGACTG
AGGGAATGAGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5911274|gb|AAD55729.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5911274|gb|AAD55729.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               405-528, - strand, RNAz p=0.754901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               405-528, - strand, RNAz p=0.754901

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               246-528, gnl|bosTau2|chr5 (73058002-73058284)
               

               
               246-528, gnl|Hg17|chr22 (44003589-44003871)
               

               
               246-528, gnl|Mm7|chr15 (85101630-85101912)
               


               
               725-928, gnl|bosTau2|chr5 (73064246-73064452)
               

               
               725-928, gnl|canFam2|chr10 (23801965-23801758)
               

               
               725-928, gnl|dasNov1|scaffold_207262 (421-225)
               

               
               725-928, gnl|hg17|chr22 (44011938-44012141)
               

               
               725-928, gnl|Hg17|chr22 (44011963-44012169)
               

               
               725-928, gnl|loxAfr1|scaffold_76679 (3739-3941)
               

               
               725-928, gnl|mm7|chr15 (85104504-85104727)
               

               
               725-928, gnl|Mm7|chr15 (85104529-85104752)
               

               
               725-928, gnl|monDom2|scaffold_107 (208357-208560)
               

               
               725-928, gnl|oryCun1|scaffold_5436 (2355-2155)
               

               
               725-928, gnl|panTro1|chr23 (44345108-44345311)
               

               
               725-928, gnl|rheMac2|chr10 (89289589-89289792)
               

               
               725-928, gnl|rn3|chr7 (123071744-123071946)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               246-528, gnl|bosTau2|chr5 (73058002-73058284)
               

               
               246-528, gnl|Hg17|chr22 (44003589-44003871)
               

               
               246-528, gnl|Mm7|chr15 (85101630-85101912)
               


               
               725-928, gnl|bosTau2|chr5 (73064246-73064452)
               

               
               725-928, gnl|canFam2|chr10 (23801965-23801758)
               

               
               725-928, gnl|dasNov1|scaffold_207262 (421-225)
               

               
               725-928, gnl|hg17|chr22 (44011938-44012141)
               

               
               725-928, gnl|Hg17|chr22 (44011963-44012169)
               

               
               725-928, gnl|loxAfr1|scaffold_76679 (3739-3941)
               

               
               725-928, gnl|mm7|chr15 (85104504-85104727)
               

               
               725-928, gnl|Mm7|chr15 (85104529-85104752)
               

               
               725-928, gnl|monDom2|scaffold_107 (208357-208560)
               

               
               725-928, gnl|oryCun1|scaffold_5436 (2355-2155)
               

               
               725-928, gnl|panTro1|chr23 (44345108-44345311)
               

               
               725-928, gnl|rheMac2|chr10 (89289589-89289792)
               

               
               725-928, gnl|rn3|chr7 (123071744-123071946)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cov (0.132153)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)

	246-528, gnl\|bosTau2\|chr5 (73058002-73058284)
	246-528, gnl\|Hg17\|chr22 (44003589-44003871)
	246-528, gnl\|Mm7\|chr15 (85101630-85101912)

	725-928, gnl\|bosTau2\|chr5 (73064246-73064452)
	725-928, gnl\|canFam2\|chr10 (23801965-23801758)
	725-928, gnl\|dasNov1\|scaffold_207262 (421-225)
	725-928, gnl\|hg17\|chr22 (44011938-44012141)
	725-928, gnl\|Hg17\|chr22 (44011963-44012169)
	725-928, gnl\|loxAfr1\|scaffold_76679 (3739-3941)
	725-928, gnl\|mm7\|chr15 (85104504-85104727)
	725-928, gnl\|Mm7\|chr15 (85104529-85104752)
	725-928, gnl\|monDom2\|scaffold_107 (208357-208560)
	725-928, gnl\|oryCun1\|scaffold_5436 (2355-2155)
	725-928, gnl\|panTro1\|chr23 (44345108-44345311)
	725-928, gnl\|rheMac2\|chr10 (89289589-89289792)
	725-928, gnl\|rn3\|chr7 (123071744-123071946)