Non-Coding RNA Search

Ss1.1-Pig4-TMW8024E04.5

Sequence:


               
               AAGCACCTGTCGCAGCCGAGGTGCTGGGGAGGCGGTCCCTGTTGTTTTCCTGGCTTCCTG
TTCAGCATCGCTAAAGTACTTGAGATTCGGTAGTTGAGTCCGAAGGCTCCACGTTAGGTT
GTCAGCCGGGCTCAGGTTTGTCTAAAGGGGTTGCCCCAGAGTGGCACAGCCCTTGCTTGT
CATCCAGAAGAGCTCCGAGAGAAGGAAGAAAGCCTCCTCCCTATCCCTGGGCTCTCAGGA
GGGCAACAGACGGGGTGGGCGGGCCCAAGACGTGCTGTGCCAAAGCCAGGTCCGATTCCA
AAGTTCTCACTGTCGTCCTTGGCAACGTCCTGCCCCTTCCTCCTTCATGGTCGGGCTTGT
GGGCCCACCACAGCCTTCCCCCACCTCTGCCTCGAGAGACCCATGTCCTTAGAGAAGACA
CTTCAGGGTTGAATCCTGCCCCAGCCCAGGCCTGGGACCTGCCCAGGTGTTGGGAGTGCT
TTCTGCTCTGAGCTGAATCCAGAGGACCTGGGCTCATGCTTGGCTCTCCACTCTCCATGC
CTCTTGTCCCCCAAACCCACTTTGCCATGGTTCGGGGGCATCCTCTGCTCTGCAGTGGGG
GTGGGACCACAGCCAGCAAGATGACCTGCTGTTCTTGGGTTTCCTAAGGGTCTTCACGGC
AGGGCTGAAAGAAAAGTGCATCACCTTGACTTCTTGAACCACTCATCCCCCCTTTTTTTC
TTCCCCCCTCCCCCCGCCCCTAAGCTATAGTTAATTTTAGTGCCTTACAAATCCTAAGCT
CAGAGAAAAGTTAGCTCCATTTCCCTTCCAGAGAGAAGGGAACCTCCCTAGGTCCCTGCC
CACCTCTTAAAGCTTGGTTGTTTATGCAACTCCATCTTAAGAACCTCCCAGCCTCCACTG
AAAACCCAGAATCTGCGAGGGAATTGTGCAAGGGAAGCTGGAATTAAGTGAGCTGTGTCA
GGCAGTGACAGAACACCACACCAGGAGCCAGGAGGCCTGGCTTTCAGTACTGCATGGCTA
GCTACCCAGCTGTGCATCCATGCGCAAGTCATTCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACCTGTCGCAGCCGAGGTGCTGGGGAGGCGGTCCCTGTTGTTTTCCTGGCTTCCTG
TTCAGCATCGCTAAAGTACTTGAGATTCGGTAGTTGAGTCCGAAGGCTCCACGTTAGGTT
GTCAGCCGGGCTCAGGTTTGTCTAAAGGGGTTGCCCCAGAGTGGCACAGCCCTTGCTTGT
CATCCAGAAGAGCTCCGAGAGAAGGAAGAAAGCCTCCTCCCTATCCCTGGGCTCTCAGGA
GGGCAACAGACGGGGTGGGCGGGCCCAAGACGTGCTGTGCCAAAGCCAGGTCCGATTCCA
AAGTTCTCACTGTCGTCCTTGGCAACGTCCTGCCCCTTCCTCCTTCATGGTCGGGCTTGT
GGGCCCACCACAGCCTTCCCCCACCTCTGCCTCGAGAGACCCATGTCCTTAGAGAAGACA
CTTCAGGGTTGAATCCTGCCCCAGCCCAGGCCTGGGACCTGCCCAGGTGTTGGGAGTGCT
TTCTGCTCTGAGCTGAATCCAGAGGACCTGGGCTCATGCTTGGCTCTCCACTCTCCATGC
CTCTTGTCCCCCAAACCCACTTTGCCATGGTTCGGGGGCATCCTCTGCTCTGCAGTGGGG
GTGGGACCACAGCCAGCAAGATGACCTGCTGTTCTTGGGTTTCCTAAGGGTCTTCACGGC
AGGGCTGAAAGAAAAGTGCATCACCTTGACTTCTTGAACCACTCATCCCCCCTTTTTTTC
TTCCCCCCTCCCCCCGCCCCTAAGCTATAGTTAATTTTAGTGCCTTACAAATCCTAAGCT
CAGAGAAAAGTTAGCTCCATTTCCCTTCCAGAGAGAAGGGAACCTCCCTAGGTCCCTGCC
CACCTCTTAAAGCTTGGTTGTTTATGCAACTCCATCTTAAGAACCTCCCAGCCTCCACTG
AAAACCCAGAATCTGCGAGGGAATTGTGCAAGGGAAGCTGGAATTAAGTGAGCTGTGTCA
GGCAGTGACAGAACACCACACCAGGAGCCAGGAGGCCTGGCTTTCAGTACTGCATGGCTA
GCTACCCAGCTGTGCATCCATGCGCAAGTCATTCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               630-746, - strand, RNAz p=0.993331

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               630-746, - strand, RNAz p=0.993331

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1053, gnl|bosTau2|chr3 (60288455-60289532)
               

               
               1-1053, gnl|Hg17|chr1 (55029587-55028538)
               

               
               1-1053, gnl|Mm7|chr4 (105963499-105964409)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1053, gnl|bosTau2|chr3 (60288455-60289532)
               

               
               1-1053, gnl|Hg17|chr1 (55029587-55028538)
               

               
               1-1053, gnl|Mm7|chr4 (105963499-105964409)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-1053, gnl\|bosTau2\|chr3 (60288455-60289532)
	1-1053, gnl\|Hg17\|chr1 (55029587-55028538)
	1-1053, gnl\|Mm7\|chr4 (105963499-105964409)