Ss1.1-Pig4-TMW8024E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACTACTGAGAATCAGGGGGTGAAGGCGGAGGTTGTGCACTGTTGCTAGTATGCAGCGAT TACTCCTTCCGCCCTTGAAGGTCTTGATGGGGAACCCGTGTCTCCGACTCCTGGTTCCTA GGGCGGCGCCTAGGACGCAGTGTGGTTGCAGCTGTGGGATCAGGCACTCCTTGAGGCCAG GGCAATATAGCACCATCACTGAAGTAGGTTTGCAGTCTGGAAGGGGTACAGTGTCCCTTC CTTCAAAGGCTGCTGAGCGGGTGGTGGGCCGATGGCTCCTGGTCTGCAGTGGAACAGTGG CTGGAGCAGTTATTCTTGGTGGAGTAACTAGGTTGACAGAGTCTGGCCTCTCCATGGTAG ACTGGCATTTAATTAAAGAGATGAAGCCACCTACAAGCCAGGAGGAATGGGAAGCAGAAT TCCAAAAATACCAGCAGTTTCCAGAATTTAAAATCCTGAATCATGATATGACGTTGCCAG AATTCAAGTTCATCTGGTATATGGAGTACTCACATCGGATGTGGGGTCGCCTTGTAGGGC TCGCGTACATCCTGCCTGCTGCCTACTTTTGGAGAAAGGGCTGGCTCAACTGTGGCCTGA AAGGACGTGTTCTTGCCCTCTGTGGTTTAGTCTGCTTCCAGGGCCTCTTGGGATGGTATA TGGTGAAAAGTGGGTTAGAAGAAAAACCAGGTTCCCATGACATCCCTCGGGTCAGCCAGT ACCGTCTCGCTGCCCACCTGGGATCAGCCCTTGTTCTTTACTGCGCCAGCTTGTGGACCT CGCTGTCACTGCTGCTACCTCAGCACAAGTTGCCTGAAACCCGTCAACTCCTGTGGTTGA GACGATGTGCTCATGGGACAGCAGGCCTGGTATTCCTTACGGCTCTCTCAGGGGCTTTTG TGGCAGGGCTGGATGCTGGCCTTGTTTATAACTCCTTCCCCAAGATGGGAGAATCTTGGA TCCCAGAGGATCTCTTTACCTTCTCTCCTCTCCTGAAGAATGTTTTTGAGAATCCCACCA CGGTGCAGTTTGATCACCGGATTTTGGGAATCACTTCAGTTACTGCCATTACAGCGCTCT ACTTCCTCTCCCGGAGAATCCCCCTTCCTCGAAGGACCAAGATAGCAGCAGCAACTCTAC TGGCTTTGGCATACACACAGGTGGGCTTGGGAATTAGCACTCTGCTGATGTATGTTCCAA CTCCTCTGGCTGCCACTCACCAGTCGGGCTCCCTAGCTCTGCTCAGTGTTGCCCTTTGGC TCATGAATGAACTCCGAAGAGTCCCAAAATAATTCTCAAGAGGATCAGCTTTCTAAGGCT GAAACTGTTTTTACGAGTTCACCAGAGAGCGCAAGAACTGGGGCCTTTCTGCGAGGATGA CCATGGCATACCATGTGGTTTCCCAGTTGGTGAAGTTATTTAAACTCCTTGCCTGTTGTG GAGACATTCACTGGATCAAGAAAATCATTAAGTGTGGTTATGCTAAAGGAACTTTTGATG TTAAAAATCAGATTTAATGTGGAGAAAGAAGTATCTGCCATTTGCTTCTTAACAGGCTCT GTCTCGGGTTTCTTAATGTTGACAAGCTGTTGATTGTACCTGCAAAATCTGACTCCTTGA CCTCCTGAGTCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACTACTGAGAATCAGGGGGTGAAGGCGGAGGTTGTGCACTGTTGCTAGTATGCAGCGAT TACTCCTTCCGCCCTTGAAGGTCTTGATGGGGAACCCGTGTCTCCGACTCCTGGTTCCTA GGGCGGCGCCTAGGACGCAGTGTGGTTGCAGCTGTGGGATCAGGCACTCCTTGAGGCCAG GGCAATATAGCACCATCACTGAAGTAGGTTTGCAGTCTGGAAGGGGTACAGTGTCCCTTC CTTCAAAGGCTGCTGAGCGGGTGGTGGGCCGATGGCTCCTGGTCTGCAGTGGAACAGTGG CTGGAGCAGTTATTCTTGGTGGAGTAACTAGGTTGACAGAGTCTGGCCTCTCCATGGTAG ACTGGCATTTAATTAAAGAGATGAAGCCACCTACAAGCCAGGAGGAATGGGAAGCAGAAT TCCAAAAATACCAGCAGTTTCCAGAATTTAAAATCCTGAATCATGATATGACGTTGCCAG AATTCAAGTTCATCTGGTATATGGAGTACTCACATCGGATGTGGGGTCGCCTTGTAGGGC TCGCGTACATCCTGCCTGCTGCCTACTTTTGGAGAAAGGGCTGGCTCAACTGTGGCCTGA AAGGACGTGTTCTTGCCCTCTGTGGTTTAGTCTGCTTCCAGGGCCTCTTGGGATGGTATA TGGTGAAAAGTGGGTTAGAAGAAAAACCAGGTTCCCATGACATCCCTCGGGTCAGCCAGT ACCGTCTCGCTGCCCACCTGGGATCAGCCCTTGTTCTTTACTGCGCCAGCTTGTGGACCT CGCTGTCACTGCTGCTACCTCAGCACAAGTTGCCTGAAACCCGTCAACTCCTGTGGTTGA GACGATGTGCTCATGGGACAGCAGGCCTGGTATTCCTTACGGCTCTCTCAGGGGCTTTTG TGGCAGGGCTGGATGCTGGCCTTGTTTATAACTCCTTCCCCAAGATGGGAGAATCTTGGA TCCCAGAGGATCTCTTTACCTTCTCTCCTCTCCTGAAGAATGTTTTTGAGAATCCCACCA CGGTGCAGTTTGATCACCGGATTTTGGGAATCACTTCAGTTACTGCCATTACAGCGCTCT ACTTCCTCTCCCGGAGAATCCCCCTTCCTCGAAGGACCAAGATAGCAGCAGCAACTCTAC TGGCTTTGGCATACACACAGGTGGGCTTGGGAATTAGCACTCTGCTGATGTATGTTCCAA CTCCTCTGGCTGCCACTCACCAGTCGGGCTCCCTAGCTCTGCTCAGTGTTGCCCTTTGGC TCATGAATGAACTCCGAAGAGTCCCAAAATAATTCTCAAGAGGATCAGCTTTCTAAGGCT GAAACTGTTTTTACGAGTTCACCAGAGAGCGCAAGAACTGGGGCCTTTCTGCGAGGATGA CCATGGCATACCATGTGGTTTCCCAGTTGGTGAAGTTATTTAAACTCCTTGCCTGTTGTG GAGACATTCACTGGATCAAGAAAATCATTAAGTGTGGTTATGCTAAAGGAACTTTTGATG TTAAAAATCAGATTTAATGTGGAGAAAGAAGTATCTGCCATTTGCTTCTTAACAGGCTCT GTCTCGGGTTTCTTAATGTTGACAAGCTGTTGATTGTACCTGCAAAATCTGACTCCTTGA CCTCCTGAGTCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 929-1354, - strand, RNAz p=0.976233 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 929-1354, - strand, RNAz p=0.976233 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 139-333, gnl|bosTau2|chr26 (11623234-11623040) | |
| 139-333, gnl|Hg17|chr10 (101479483-101479298) | |
| 139-333, gnl|Mm7|chr19 (43645409-43645215) | |
| 457-642, gnl|bosTau2|chr26 (11620215-11620030) | |
| 457-642, gnl|canFam2|chr28 (15616424-15616643) | |
| 457-642, gnl|danRer3|chr13 (79334-79534) | |
| 457-642, gnl|dasNov1|scaffold_216288 (853-634) | |
| 457-642, gnl|echTel1|scaffold_196339 (4665-4446) | |
| 457-642, gnl|fr1|chrUn (117886452-117886659) | |
| 457-642, gnl|galGal2|chr6 (21273262-21273052) | |
| 457-642, gnl|hg17|chr10 (101476693-101476912) | |
| 457-642, gnl|Hg17|chr10 (101476899-101476714) | |
| 457-642, gnl|loxAfr1|scaffold_34109 (1878-2097) | |
| 457-642, gnl|mm7|chr19 (43640587-43640806) | |
| 457-642, gnl|Mm7|chr19 (43640793-43640608) | |
| 457-642, gnl|monDom2|scaffold_14 (22463929-22463712) | |
| 457-642, gnl|oryCun1|scaffold_101130 (10988-10769) | |
| 457-642, gnl|panTro1|chr8_random (2389323-2389104) | |
| 457-642, gnl|rheMac2|chr9 (99349677-99349896) | |
| 457-642, gnl|rn3|chr1 (247196681-247196461) | |
| 457-642, gnl|tetNig1|chr17 (5017368-5017567) | |
| 457-642, gnl|xenTro1|scaffold_194 (1686691-1686482) | |
| 889-1073, gnl|bosTau2|chr26 (11610914-11610729) | |
| 889-1073, gnl|Hg17|chr10 (101468250-101468061) | |
| 889-1073, gnl|Mm7|chr19 (43633867-43633683) | |
| 1157-1623, gnl|bosTau2|chr26 (11607971-11607497) | |
| 1157-1623, gnl|Hg17|chr10 (101464469-101463988) | |
| 1157-1623, gnl|Mm7|chr19 (43630729-43630327) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-333, gnl|bosTau2|chr26 (11623234-11623040) | |
| 139-333, gnl|Hg17|chr10 (101479483-101479298) | |
| 139-333, gnl|Mm7|chr19 (43645409-43645215) | |
| 457-642, gnl|bosTau2|chr26 (11620215-11620030) | |
| 457-642, gnl|canFam2|chr28 (15616424-15616643) | |
| 457-642, gnl|danRer3|chr13 (79334-79534) | |
| 457-642, gnl|dasNov1|scaffold_216288 (853-634) | |
| 457-642, gnl|echTel1|scaffold_196339 (4665-4446) | |
| 457-642, gnl|fr1|chrUn (117886452-117886659) | |
| 457-642, gnl|galGal2|chr6 (21273262-21273052) | |
| 457-642, gnl|hg17|chr10 (101476693-101476912) | |
| 457-642, gnl|Hg17|chr10 (101476899-101476714) | |
| 457-642, gnl|loxAfr1|scaffold_34109 (1878-2097) | |
| 457-642, gnl|mm7|chr19 (43640587-43640806) | |
| 457-642, gnl|Mm7|chr19 (43640793-43640608) | |
| 457-642, gnl|monDom2|scaffold_14 (22463929-22463712) | |
| 457-642, gnl|oryCun1|scaffold_101130 (10988-10769) | |
| 457-642, gnl|panTro1|chr8_random (2389323-2389104) | |
| 457-642, gnl|rheMac2|chr9 (99349677-99349896) | |
| 457-642, gnl|rn3|chr1 (247196681-247196461) | |
| 457-642, gnl|tetNig1|chr17 (5017368-5017567) | |
| 457-642, gnl|xenTro1|scaffold_194 (1686691-1686482) | |
| 889-1073, gnl|bosTau2|chr26 (11610914-11610729) | |
| 889-1073, gnl|Hg17|chr10 (101468250-101468061) | |
| 889-1073, gnl|Mm7|chr19 (43633867-43633683) | |
| 1157-1623, gnl|bosTau2|chr26 (11607971-11607497) | |
| 1157-1623, gnl|Hg17|chr10 (101464469-101463988) | |
| 1157-1623, gnl|Mm7|chr19 (43630729-43630327) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nms (0.213858) | |
| cty (0.20816) | |
| col (0.195008) | |
| ill (0.175593) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| ebs (0.118301) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| cty (0.20816) | |
| col (0.195008) | |
| ill (0.175593) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| ebs (0.118301) |