Non-Coding RNA Search

Ss1.1-Pig4-TMW8024E24.5

Sequence:


               
               CATATACAGATCACAGAGTTATAAAACAGGGATTTATTCAGTGGAACTCATAAATGACAG
TTTATATGACTGGCATGTTAAACTGCAGAAGGTTGATCCTGATAGTCCTTTGCACAGTGA
TCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAA
GGATAATTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
GTACGTGTTGGGTGGCGGAGCATTATGCATGGAACTGCTTACAAAACAGGGCTGGAGCAG
TGCCTACTCAATAGAATCGGTCATCATGCAAATCAATGCCACTTTAGTCAAAGGCAAAGC
CAGAGTGCAGTTTGGAGCAAATAAGAATCAATATAATCTAGCAAGAGCCCAACAATCCTA
TAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACCCCTCCAAAGGAAGATGG
CTAAATGTGATGACTTGTGTATGTTTGGACCAATGTTGCTTTAAAGAAAAATCTTTCCAA
CATGCAGACACAAGCTTTGGGTGCCCCTATAACAGCAGTACCGAAGATGTTAGCTAATAG
ATATTTTAGTGGATAATCTGTCAACTGATCCAGTATAAGTTACAGCCTTTCCATTTTTCT
CATTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTGTATTTTTCTTGATAAATACA
TATACTGGCCACTCCTTATCATCTCTTTTTCTTGAAGGGTGAAATGTGTTAGGCAGGCAA
GTCAGCGTCAGGTTACTAAAGTTGTGACTTTAGGGCAACTTTCCCATTTTGAGCTCTTGC
GTTATGAGGATTTGCAATATATTGTTCCATTTAAAGCCAATAAAAGTTTAATTGATGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATATACAGATCACAGAGTTATAAAACAGGGATTTATTCAGTGGAACTCATAAATGACAG
TTTATATGACTGGCATGTTAAACTGCAGAAGGTTGATCCTGATAGTCCTTTGCACAGTGA
TCTTCAGATCTTAAAAGAAAAAGAAGGCATAGAATATATTTTGCTTAACTTCTCTTTTAA
GGATAATTTTCCATTTGATCCTCCATTTGTTCGAGTGGTGTTACCTGTTCTCTCAGGAGG
GTACGTGTTGGGTGGCGGAGCATTATGCATGGAACTGCTTACAAAACAGGGCTGGAGCAG
TGCCTACTCAATAGAATCGGTCATCATGCAAATCAATGCCACTTTAGTCAAAGGCAAAGC
CAGAGTGCAGTTTGGAGCAAATAAGAATCAATATAATCTAGCAAGAGCCCAACAATCCTA
TAATTCCATTGTACAGATACATGAGAAAAATGGCTGGTACACCCCTCCAAAGGAAGATGG
CTAAATGTGATGACTTGTGTATGTTTGGACCAATGTTGCTTTAAAGAAAAATCTTTCCAA
CATGCAGACACAAGCTTTGGGTGCCCCTATAACAGCAGTACCGAAGATGTTAGCTAATAG
ATATTTTAGTGGATAATCTGTCAACTGATCCAGTATAAGTTACAGCCTTTCCATTTTTCT
CATTTTAGGTATCTTGGACTGAGCAGTGGGGCCTTTACTGTATTTTTCTTGATAAATACA
TATACTGGCCACTCCTTATCATCTCTTTTTCTTGAAGGGTGAAATGTGTTAGGCAGGCAA
GTCAGCGTCAGGTTACTAAAGTTGTGACTTTAGGGCAACTTTCCCATTTTGAGCTCTTGC
GTTATGAGGATTTGCAATATATTGTTCCATTTAAAGCCAATAAAAGTTTAATTGATGTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q80UT5_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q80UT5_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               384-490, gnl|bosTau2|chr21 (20731930-20732036)
               

               
               384-490, gnl|Hg17|chr15 (73976389-73976495)
               

               
               384-490, gnl|Mm7|chr9 (55234011-55234114)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-490, gnl|bosTau2|chr21 (20731930-20732036)
               

               
               384-490, gnl|Hg17|chr15 (73976389-73976495)
               

               
               384-490, gnl|Mm7|chr9 (55234011-55234114)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               jej (0.197844)
               

               
               ldo (0.194005)
               

               
               ste (0.135208)
               

               
               kid (0.129735)

	384-490, gnl\|bosTau2\|chr21 (20731930-20732036)
	384-490, gnl\|Hg17\|chr15 (73976389-73976495)
	384-490, gnl\|Mm7\|chr9 (55234011-55234114)

	pgl (0.236967)
	tes (0.207814)
	jej (0.197844)
	ldo (0.194005)
	ste (0.135208)
	kid (0.129735)