Ss1.1-Pig4-TMW8024F01.5
|
GGCGGCGGCGGCGGCAGCAGCAGCAGTGGCGGTCCCACTGGCAGGCGGGCAAGAGGGGAG
TCCAGGCGGCGTCCGGCGTGGGAGCCGGGGGACCACGATGGTAAAGAAGCGGAAAGGCCG
CGTCGTGATCGACTCAGACACGGAGGACAGCGGCAGCGACGAGAACCTGGATCAGGAGCT
CTTGTCCCTGGCAAAGCGGAAGCGAAGTGACTCTGAAGAGAAGGAGCCGCCTGTGAGTCA
GCCTGCAGCCTCCTCAGACTCCGAAACGTCCAACAGCGATGATGAGTGGACTTTTGGGAG
CAATAAAAATAAGAAAAAAGGAAAAGCCAGAAAAATAGAGAAGAAAGGAACCATGAAGAA
ACAGGCCAACAAAACTGCTTCCTCAGGCAGTTCGGACAAAGACACTTCAGCTGAGAGCTC
AGCCCCTGAGGAAGGTGAAGTGTCAGATTCTGACAGCAATAGCTCCTCCTCCAGTTCGGA
TTCAGACTCTTCCTCAGAAGATGAGGAGTTCCATGATGGCTATGGAGAAGACCTCATGGG
AGATGAGGAAGATAGGGCTCGTCTGGAACAGATGACAGAAAAAGAGAGAGAGCAAGAGCT
ATTCAACCGCATAGAGAAGAGGGAGGTGCTGAAAAAAAGATTTGAAATCAGGAAAAAACT
GAAAACAGCCAAAAAGAAAGAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GGCGGCGGCGGCGGCAGCAGCAGCAGTGGCGGTCCCACTGGCAGGCGGGCAAGAGGGGAG
TCCAGGCGGCGTCCGGCGTGGGAGCCGGGGGACCACGATGGTAAAGAAGCGGAAAGGCCG
CGTCGTGATCGACTCAGACACGGAGGACAGCGGCAGCGACGAGAACCTGGATCAGGAGCT
CTTGTCCCTGGCAAAGCGGAAGCGAAGTGACTCTGAAGAGAAGGAGCCGCCTGTGAGTCA
GCCTGCAGCCTCCTCAGACTCCGAAACGTCCAACAGCGATGATGAGTGGACTTTTGGGAG
CAATAAAAATAAGAAAAAAGGAAAAGCCAGAAAAATAGAGAAGAAAGGAACCATGAAGAA
ACAGGCCAACAAAACTGCTTCCTCAGGCAGTTCGGACAAAGACACTTCAGCTGAGAGCTC
AGCCCCTGAGGAAGGTGAAGTGTCAGATTCTGACAGCAATAGCTCCTCCTCCAGTTCGGA
TTCAGACTCTTCCTCAGAAGATGAGGAGTTCCATGATGGCTATGGAGAAGACCTCATGGG
AGATGAGGAAGATAGGGCTCGTCTGGAACAGATGACAGAAAAAGAGAGAGAGCAAGAGCT
ATTCAACCGCATAGAGAAGAGGGAGGTGCTGAAAAAAAGATTTGAAATCAGGAAAAAACT
GAAAACAGCCAAAAAGAAAGAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
2-176, gnl|bosTau2|chr10 (22951041-22951215) |
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2-176, gnl|Hg17|chr15 (39496633-39496804) |
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2-176, gnl|Mm7|chr2 (119415953-119416130) |
| |
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422-639, gnl|bosTau2|chr10 (22974719-22974936) |
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422-639, gnl|canFam2|chr30 (11491954-11492184) |
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422-639, gnl|danRer3|chr13 (34486603-34486822) |
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422-639, gnl|fr1|chrUn (262967718-262967495) |
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422-639, gnl|galGal2|chr5 (21869885-21870114) |
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422-639, gnl|hg17|chr15 (39537146-39537377) |
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422-639, gnl|Hg17|chr15 (39537149-39537366) |
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422-639, gnl|loxAfr1|scaffold_146092 (4809-4578) |
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422-639, gnl|mm7|chr2 (119446272-119446500) |
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422-639, gnl|Mm7|chr2 (119446281-119446492) |
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422-639, gnl|monDom2|scaffold_12 (667780-667553) |
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422-639, gnl|oryCun1|scaffold_188353 (19019-18791) |
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422-639, gnl|panTro1|chr16 (39450143-39450374) |
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422-639, gnl|rheMac2|chr7 (19845026-19845259) |
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422-639, gnl|rn3|chr3 (106118072-106118303) |
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422-639, gnl|tetNig1|chr10 (11507181-11507404) |
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422-639, gnl|xenTro1|scaffold_1046 (124260-124478) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
2-176, gnl|bosTau2|chr10 (22951041-22951215) |
|
2-176, gnl|Hg17|chr15 (39496633-39496804) |
|
2-176, gnl|Mm7|chr2 (119415953-119416130) |
| |
|
422-639, gnl|bosTau2|chr10 (22974719-22974936) |
|
422-639, gnl|canFam2|chr30 (11491954-11492184) |
|
422-639, gnl|danRer3|chr13 (34486603-34486822) |
|
422-639, gnl|fr1|chrUn (262967718-262967495) |
|
422-639, gnl|galGal2|chr5 (21869885-21870114) |
|
422-639, gnl|hg17|chr15 (39537146-39537377) |
|
422-639, gnl|Hg17|chr15 (39537149-39537366) |
|
422-639, gnl|loxAfr1|scaffold_146092 (4809-4578) |
|
422-639, gnl|mm7|chr2 (119446272-119446500) |
|
422-639, gnl|Mm7|chr2 (119446281-119446492) |
|
422-639, gnl|monDom2|scaffold_12 (667780-667553) |
|
422-639, gnl|oryCun1|scaffold_188353 (19019-18791) |
|
422-639, gnl|panTro1|chr16 (39450143-39450374) |
|
422-639, gnl|rheMac2|chr7 (19845026-19845259) |
|
422-639, gnl|rn3|chr3 (106118072-106118303) |
|
422-639, gnl|tetNig1|chr10 (11507181-11507404) |
|
422-639, gnl|xenTro1|scaffold_1046 (124260-124478) |
|
ece (0.229305) |
|
fat (0.147427) |
|
csk (0.140746) |
|
cst (0.140036) |
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nca (0.136874) |
|
pgl (0.118483) |
|
ece (0.229305) |
|
fat (0.147427) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
pgl (0.118483) |
