Non-Coding RNA Search

Ss1.1-Pig4-TMW8024F04.3

Sequence:


               
               TGAAGTTATGCAAGCCTTGATGTTTGAACCTGCAGTTGTCATAATTGTCATAGGATTCTT
ACTTAAGATTATTGGAAACATTCTAGATTTTTTCATTTTGTACTTTTAGGACTAAACCTA
ATTAGACATAAAAATCTGAGGAACGTCTTCACCGAGTCCTAGATAGATGAGTGTTGGGAG
TTGAGAAAGTTTTACATTTTTGAGGGGCCATAAATTCTAGACTTTAGGGAGTTGTTGCTT
AAAAAACTTCAGAGGTGATTTTGTGGTTTGTCTGAGGAGTTTGCTGCAGTATTTAGCAAC
TTTTCCTCCCAGAAAAATCACAATACTTCTTTCTCAGTGTGTTATAGCTTCTTTTAGAAA
ATGTACTCATTGTTTTAGGATAGATTAATACCACGACACCGTTTCAAAGACAGATCTGTG
CATCCTGTGGGTGCTTGATAGATTTTTTTTTTTGTCTGATTGATAATGGCCTGGATGATG
ACGCCAGCTTTTATGTCAGTATGCAAATAAATCATGAGTGTGTAAGGGATTAAATGAGCT
TTAAAAATAGATGTACTAGCTTCAAGATAAAACATTATATCTGAGGGAAAGCTCCTGAAG
AAGTGGCCCCACCACTTTTCTTCATTCCATATATTCCTCTATTTTCTTTTCTCTTTTATA
TGAAAATGCTGGAGTTTTTAAACAGAGGGTTAAGAAAGAAACAAAGTACATACATTGTAC
AAGCAAACTGTAACATAAAGCACACAGATTCTTCATGTGGGGGTTACTCATTGATTTTAG
GTTTTTGTACATTTGTTACAAGCCTTGTATTGTTTTACTTTGAATCAACTGAAAGTGCCC
TGAGTTAGAGCCATTTATAATTCCCATGGAAGCTAACAGTAGCTCCACACATATGACTGC
AGTTGTTCTGCATAGCCCTTTAATAAATCCATTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTTATGCAAGCCTTGATGTTTGAACCTGCAGTTGTCATAATTGTCATAGGATTCTT
ACTTAAGATTATTGGAAACATTCTAGATTTTTTCATTTTGTACTTTTAGGACTAAACCTA
ATTAGACATAAAAATCTGAGGAACGTCTTCACCGAGTCCTAGATAGATGAGTGTTGGGAG
TTGAGAAAGTTTTACATTTTTGAGGGGCCATAAATTCTAGACTTTAGGGAGTTGTTGCTT
AAAAAACTTCAGAGGTGATTTTGTGGTTTGTCTGAGGAGTTTGCTGCAGTATTTAGCAAC
TTTTCCTCCCAGAAAAATCACAATACTTCTTTCTCAGTGTGTTATAGCTTCTTTTAGAAA
ATGTACTCATTGTTTTAGGATAGATTAATACCACGACACCGTTTCAAAGACAGATCTGTG
CATCCTGTGGGTGCTTGATAGATTTTTTTTTTTGTCTGATTGATAATGGCCTGGATGATG
ACGCCAGCTTTTATGTCAGTATGCAAATAAATCATGAGTGTGTAAGGGATTAAATGAGCT
TTAAAAATAGATGTACTAGCTTCAAGATAAAACATTATATCTGAGGGAAAGCTCCTGAAG
AAGTGGCCCCACCACTTTTCTTCATTCCATATATTCCTCTATTTTCTTTTCTCTTTTATA
TGAAAATGCTGGAGTTTTTAAACAGAGGGTTAAGAAAGAAACAAAGTACATACATTGTAC
AAGCAAACTGTAACATAAAGCACACAGATTCTTCATGTGGGGGTTACTCATTGATTTTAG
GTTTTTGTACATTTGTTACAAGCCTTGTATTGTTTTACTTTGAATCAACTGAAAGTGCCC
TGAGTTAGAGCCATTTATAATTCCCATGGAAGCTAACAGTAGCTCCACACATATGACTGC
AGTTGTTCTGCATAGCCCTTTAATAAATCCATTTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               226-330, + strand, RNAz p=0.953665

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               226-330, + strand, RNAz p=0.953665

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_022344, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_022344, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-354, gnl|bosTau2|chr19 (12488985-12488638)
               

               
               1-354, gnl|Hg17|chr17 (27682868-27682526)
               

               
               1-354, gnl|Mm7|chr11 (80445343-80445017)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-354, gnl|bosTau2|chr19 (12488985-12488638)
               

               
               1-354, gnl|Hg17|chr17 (27682868-27682526)
               

               
               1-354, gnl|Mm7|chr11 (80445343-80445017)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-354, gnl\|bosTau2\|chr19 (12488985-12488638)
	1-354, gnl\|Hg17\|chr17 (27682868-27682526)
	1-354, gnl\|Mm7\|chr11 (80445343-80445017)