Ss1.1-Pig4-TMW8024F13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GATAACGCGCGCTAGACCGCACGAGGTGAAGGCGTAATGGAGGGCTCGGCTTCTACCCCG GCGTCCGCTGCTTCAACCGCAACTTCGTCTTCGACTGTAGCGACCCCCGCCTCACTCGAG CAGCTGAATGAAGAGCAGATTAAAAAGGCTGTGGAAACTCTCTTGGCACATTCCAAATCC AGGAAGAACGCGAATGGATTGCTTTTGAATGAGAATGAAAATTTCTTTTTAATGGTGGTA TTATGGAAAATTCCAAGTAAAGAACTGAGGGTCAGATTGTCCTTGCCTCATGGTATTCGA TCAGATTTAACAGATATCTGTTTATTCACCAAAGATGAACCCAATTTAACTCCTGAACAG ACAGAACGTTTTTATAAGAAGCTTTTGAACAAGCATGGGGTTAAAAACATTTCTCAGATT ATCCCCTTCCGAACTCTAAAAAAGGAATATAAAGCCTATGAAGCCAAGCTCCGCCTCTTG GGCAGTTTTGACTTCTTCATTACGGACTCCAGAATCAGGCGGCTCTTACCCTCACACCTC GGGAGGCATTTCTACAACAGAAAGAAAGTTCCGGTATCTGTGAACCTTCAGGCCAAGAAT TTGTCCAGAGAGATCAGTGACTGTGTTGGGGGAACTGTCCTAAACATCTCGAAAAGTGGT TCTTGCAGCACCATCCGCATCGGGCACACGGGGATGCAGGTTCAGCACATCGTTGAGAAC GTCCTTGCCGTGGCAAAAAGGCTCTCCCAGGCCCTGCCGGAGAAGTGGGAGAGCGTGAAG CTCTTGTACGTGAAGACGGAGAGGTCGGTCTCCCTGCCTGTCTTCTCGTCGTTTGTCAGC AGTCGGGGCGAAGCGAAGGAACTGCGCGCCACAAATCAGAAGAAAAAGGAAGGAAAGAAA AGCCAAAAGAAGAAAGAACATCTTAAAACACAACAGGAGAAAAAGGAAACCACAAAGCTG AGGAAAAAGGCTGGGAAGGCTGCACCAGCCCCAAGTGTAGATGATGCGGCTGCTAAAACT GGCGGTGCTCCAGGCAAAGGCCCTGCCCCCCAGAAGAAGGCCAGTAGGGTGAGCGCCCCA CCTAAAGCGCAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GATAACGCGCGCTAGACCGCACGAGGTGAAGGCGTAATGGAGGGCTCGGCTTCTACCCCG GCGTCCGCTGCTTCAACCGCAACTTCGTCTTCGACTGTAGCGACCCCCGCCTCACTCGAG CAGCTGAATGAAGAGCAGATTAAAAAGGCTGTGGAAACTCTCTTGGCACATTCCAAATCC AGGAAGAACGCGAATGGATTGCTTTTGAATGAGAATGAAAATTTCTTTTTAATGGTGGTA TTATGGAAAATTCCAAGTAAAGAACTGAGGGTCAGATTGTCCTTGCCTCATGGTATTCGA TCAGATTTAACAGATATCTGTTTATTCACCAAAGATGAACCCAATTTAACTCCTGAACAG ACAGAACGTTTTTATAAGAAGCTTTTGAACAAGCATGGGGTTAAAAACATTTCTCAGATT ATCCCCTTCCGAACTCTAAAAAAGGAATATAAAGCCTATGAAGCCAAGCTCCGCCTCTTG GGCAGTTTTGACTTCTTCATTACGGACTCCAGAATCAGGCGGCTCTTACCCTCACACCTC GGGAGGCATTTCTACAACAGAAAGAAAGTTCCGGTATCTGTGAACCTTCAGGCCAAGAAT TTGTCCAGAGAGATCAGTGACTGTGTTGGGGGAACTGTCCTAAACATCTCGAAAAGTGGT TCTTGCAGCACCATCCGCATCGGGCACACGGGGATGCAGGTTCAGCACATCGTTGAGAAC GTCCTTGCCGTGGCAAAAAGGCTCTCCCAGGCCCTGCCGGAGAAGTGGGAGAGCGTGAAG CTCTTGTACGTGAAGACGGAGAGGTCGGTCTCCCTGCCTGTCTTCTCGTCGTTTGTCAGC AGTCGGGGCGAAGCGAAGGAACTGCGCGCCACAAATCAGAAGAAAAAGGAAGGAAAGAAA AGCCAAAAGAAGAAAGAACATCTTAAAACACAACAGGAGAAAAAGGAAACCACAAAGCTG AGGAAAAAGGCTGGGAAGGCTGCACCAGCCCCAAGTGTAGATGATGCGGCTGCTAAAACT GGCGGTGCTCCAGGCAAAGGCCCTGCCCCCCAGAAGAAGGCCAGTAGGGTGAGCGCCCCA CCTAAAGCGCAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 135-280, gnl|bosTau2|chr25 (9883443-9883298) | |
| 135-280, gnl|canFam2|chr15 (55325024-55324921) | |
| 135-280, gnl|canFam2|chr6 (34022746-34022586) | |
| 135-280, gnl|dasNov1|scaffold_159590 (4536-4681) | |
| 135-280, gnl|dasNov1|scaffold_159590 (4681-4578) | |
| 135-280, gnl|echTel1|scaffold_111464 (378-221) | |
| 135-280, gnl|echTel1|scaffold_111464 (230-333) | |
| 135-280, gnl|galGal2|chr14 (2314590-2314742) | |
| 135-280, gnl|hg17|chr16 (11851633-11851821) | |
| 135-280, gnl|Hg17|chr16 (11851780-11851635) | |
| 135-280, gnl|hg17|chr9 (85779132-85779235) | |
| 135-280, gnl|loxAfr1|scaffold_49298 (666-824) | |
| 135-280, gnl|loxAfr1|scaffold_49298 (814-711) | |
| 135-280, gnl|mm7|chr16 (10881516-10881677) | |
| 135-280, gnl|mm7|chr16 (10881659-10881561) | |
| 135-280, gnl|Mm7|chr16 (10881663-10881518) | |
| 135-280, gnl|monDom2|scaffold_17 (28195415-28195598) | |
| 135-280, gnl|monDom2|scaffold_50 (8268325-8268432) | |
| 135-280, gnl|oryCun1|scaffold_184882 (53258-53438) | |
| 135-280, gnl|oryCun1|scaffold_184882 (53401-53303) | |
| 135-280, gnl|panTro1|chr11 (69831014-69831117) | |
| 135-280, gnl|panTro1|chr18 (32302335-32302523) | |
| 135-280, gnl|rheMac2|chr15 (94539853-94539956) | |
| 135-280, gnl|rheMac2|chr20 (11921252-11921439) | |
| 135-280, gnl|rn3|chr10 (4312566-4312407) | |
| 135-280, gnl|rn3|chrX (19696788-19696892) | |
| 135-280, gnl|xenTro1|scaffold_290 (308887-309065) | |
| 410-566, gnl|bosTau2|chr25 (9880505-9880350) | |
| 410-566, gnl|canFam2|chr6 (34026408-34026206) | |
| 410-566, gnl|danRer3|chr12 (14087839-14087666) | |
| 410-566, gnl|dasNov1|scaffold_6163 (6766-6964) | |
| 410-566, gnl|echTel1|scaffold_193980 (674-869) | |
| 410-566, gnl|fr1|chrUn (112221170-112220989) | |
| 410-566, gnl|galGal2|chr14 (2313458-2313659) | |
| 410-566, gnl|hg17|chr16 (11848038-11848238) | |
| 410-566, gnl|Hg17|chr16 (11848208-11848053) | |
| 410-566, gnl|mm7|chr16 (10878758-10878960) | |
| 410-566, gnl|Mm7|chr16 (10878928-10878773) | |
| 410-566, gnl|monDom2|scaffold_17 (28190051-28190252) | |
| 410-566, gnl|oryCun1|scaffold_184882 (50494-50691) | |
| 410-566, gnl|panTro1|chr18 (32298742-32298942) | |
| 410-566, gnl|rheMac2|chr20 (11916942-11917142) | |
| 410-566, gnl|rn3|chr10 (4315463-4315261) | |
| 410-566, gnl|tetNig1|chr2 (3309304-3309102) | |
| 410-566, gnl|xenTro1|scaffold_290 (306358-306548) | |
| 568-668, gnl|bosTau2|chr25 (9880261-9880161) | |
| 568-668, gnl|canFam2|chr6 (34026590-34026439) | |
| 568-668, gnl|dasNov1|scaffold_6163 (6587-6737) | |
| 568-668, gnl|echTel1|scaffold_193980 (494-644) | |
| 568-668, gnl|fr1|chrUn (112221392-112221218) | |
| 568-668, gnl|galGal2|chr14 (2313241-2313357) | |
| 568-668, gnl|hg17|chr16 (11847853-11848007) | |
| 568-668, gnl|Hg17|chr16 (11847959-11847859) | |
| 568-668, gnl|loxAfr1|scaffold_129624 (2113-2238) | |
| 568-668, gnl|mm7|chr16 (10878582-10878730) | |
| 568-668, gnl|Mm7|chr16 (10878687-10878587) | |
| 568-668, gnl|monDom2|scaffold_17 (28189861-28189982) | |
| 568-668, gnl|oryCun1|scaffold_184882 (50314-50466) | |
| 568-668, gnl|panTro1|chr18 (32298557-32298711) | |
| 568-668, gnl|rheMac2|chr20 (11916759-11916911) | |
| 568-668, gnl|rn3|chr10 (4315638-4315492) | |
| 568-668, gnl|tetNig1|chr2 (3309514-3309342) | |
| 761-889, gnl|bosTau2|chr25 (9877924-9877796) | |
| 761-889, gnl|canFam2|chr15 (55324404-55324297) | |
| 761-889, gnl|dasNov1|scaffold_159590 (4062-3955) | |
| 761-889, gnl|echTel1|scaffold_167910 (3485-3604) | |
| 761-889, gnl|Hg17|chr16 (11843180-11843052) | |
| 761-889, gnl|hg17|chr9 (85780019-85780126) | |
| 761-889, gnl|loxAfr1|scaffold_32491 (4263-4071) | |
| 761-889, gnl|mm7|chr16 (10875684-10875505) | |
| 761-889, gnl|Mm7|chr16 (10875600-10875475) | |
| 761-889, gnl|monDom2|scaffold_50 (8268953-8269058) | |
| 761-889, gnl|oryCun1|scaffold_184882 (47054-46870) | |
| 761-889, gnl|panTro1|chr11 (69831901-69832008) | |
| 761-889, gnl|rheMac2|chr15 (94540754-94540861) | |
| 761-889, gnl|rn3|chrX (19697402-19697501) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-280, gnl|bosTau2|chr25 (9883443-9883298) | |
| 135-280, gnl|canFam2|chr15 (55325024-55324921) | |
| 135-280, gnl|canFam2|chr6 (34022746-34022586) | |
| 135-280, gnl|dasNov1|scaffold_159590 (4536-4681) | |
| 135-280, gnl|dasNov1|scaffold_159590 (4681-4578) | |
| 135-280, gnl|echTel1|scaffold_111464 (378-221) | |
| 135-280, gnl|echTel1|scaffold_111464 (230-333) | |
| 135-280, gnl|galGal2|chr14 (2314590-2314742) | |
| 135-280, gnl|hg17|chr16 (11851633-11851821) | |
| 135-280, gnl|Hg17|chr16 (11851780-11851635) | |
| 135-280, gnl|hg17|chr9 (85779132-85779235) | |
| 135-280, gnl|loxAfr1|scaffold_49298 (666-824) | |
| 135-280, gnl|loxAfr1|scaffold_49298 (814-711) | |
| 135-280, gnl|mm7|chr16 (10881516-10881677) | |
| 135-280, gnl|mm7|chr16 (10881659-10881561) | |
| 135-280, gnl|Mm7|chr16 (10881663-10881518) | |
| 135-280, gnl|monDom2|scaffold_17 (28195415-28195598) | |
| 135-280, gnl|monDom2|scaffold_50 (8268325-8268432) | |
| 135-280, gnl|oryCun1|scaffold_184882 (53258-53438) | |
| 135-280, gnl|oryCun1|scaffold_184882 (53401-53303) | |
| 135-280, gnl|panTro1|chr11 (69831014-69831117) | |
| 135-280, gnl|panTro1|chr18 (32302335-32302523) | |
| 135-280, gnl|rheMac2|chr15 (94539853-94539956) | |
| 135-280, gnl|rheMac2|chr20 (11921252-11921439) | |
| 135-280, gnl|rn3|chr10 (4312566-4312407) | |
| 135-280, gnl|rn3|chrX (19696788-19696892) | |
| 135-280, gnl|xenTro1|scaffold_290 (308887-309065) | |
| 410-566, gnl|bosTau2|chr25 (9880505-9880350) | |
| 410-566, gnl|canFam2|chr6 (34026408-34026206) | |
| 410-566, gnl|danRer3|chr12 (14087839-14087666) | |
| 410-566, gnl|dasNov1|scaffold_6163 (6766-6964) | |
| 410-566, gnl|echTel1|scaffold_193980 (674-869) | |
| 410-566, gnl|fr1|chrUn (112221170-112220989) | |
| 410-566, gnl|galGal2|chr14 (2313458-2313659) | |
| 410-566, gnl|hg17|chr16 (11848038-11848238) | |
| 410-566, gnl|Hg17|chr16 (11848208-11848053) | |
| 410-566, gnl|mm7|chr16 (10878758-10878960) | |
| 410-566, gnl|Mm7|chr16 (10878928-10878773) | |
| 410-566, gnl|monDom2|scaffold_17 (28190051-28190252) | |
| 410-566, gnl|oryCun1|scaffold_184882 (50494-50691) | |
| 410-566, gnl|panTro1|chr18 (32298742-32298942) | |
| 410-566, gnl|rheMac2|chr20 (11916942-11917142) | |
| 410-566, gnl|rn3|chr10 (4315463-4315261) | |
| 410-566, gnl|tetNig1|chr2 (3309304-3309102) | |
| 410-566, gnl|xenTro1|scaffold_290 (306358-306548) | |
| 568-668, gnl|bosTau2|chr25 (9880261-9880161) | |
| 568-668, gnl|canFam2|chr6 (34026590-34026439) | |
| 568-668, gnl|dasNov1|scaffold_6163 (6587-6737) | |
| 568-668, gnl|echTel1|scaffold_193980 (494-644) | |
| 568-668, gnl|fr1|chrUn (112221392-112221218) | |
| 568-668, gnl|galGal2|chr14 (2313241-2313357) | |
| 568-668, gnl|hg17|chr16 (11847853-11848007) | |
| 568-668, gnl|Hg17|chr16 (11847959-11847859) | |
| 568-668, gnl|loxAfr1|scaffold_129624 (2113-2238) | |
| 568-668, gnl|mm7|chr16 (10878582-10878730) | |
| 568-668, gnl|Mm7|chr16 (10878687-10878587) | |
| 568-668, gnl|monDom2|scaffold_17 (28189861-28189982) | |
| 568-668, gnl|oryCun1|scaffold_184882 (50314-50466) | |
| 568-668, gnl|panTro1|chr18 (32298557-32298711) | |
| 568-668, gnl|rheMac2|chr20 (11916759-11916911) | |
| 568-668, gnl|rn3|chr10 (4315638-4315492) | |
| 568-668, gnl|tetNig1|chr2 (3309514-3309342) | |
| 761-889, gnl|bosTau2|chr25 (9877924-9877796) | |
| 761-889, gnl|canFam2|chr15 (55324404-55324297) | |
| 761-889, gnl|dasNov1|scaffold_159590 (4062-3955) | |
| 761-889, gnl|echTel1|scaffold_167910 (3485-3604) | |
| 761-889, gnl|Hg17|chr16 (11843180-11843052) | |
| 761-889, gnl|hg17|chr9 (85780019-85780126) | |
| 761-889, gnl|loxAfr1|scaffold_32491 (4263-4071) | |
| 761-889, gnl|mm7|chr16 (10875684-10875505) | |
| 761-889, gnl|Mm7|chr16 (10875600-10875475) | |
| 761-889, gnl|monDom2|scaffold_50 (8268953-8269058) | |
| 761-889, gnl|oryCun1|scaffold_184882 (47054-46870) | |
| 761-889, gnl|panTro1|chr11 (69831901-69832008) | |
| 761-889, gnl|rheMac2|chr15 (94540754-94540861) | |
| 761-889, gnl|rn3|chrX (19697402-19697501) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| nep (0.183925) | |
| ill (0.175593) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| cty (0.10408) |