Ss1.1-Pig4-TMW8024G03.3
|
TTCTTTGTGCAACAACTGGAAAGGAGCAGTGAAGTTTATTTTAATTGTTGTTTTTTTTCC
CCCAAAGTACAATCTGTTGTTTATGTAGGACAAAAATAATTTTAAAAAGAAAACTTTATA
TAAAAATTGTTTATGAAGTTTCTCTGAAACATTTCTTTGGAATTTTTTTAGATTGATGCA
AATGCTTAAAAAGAAAAACGCATACCTAAAGCATTGGACTTCTTTAAAAGAAAACTTTTA
TTTTTTATGTATTTCCTGTCAGTTAACTTTTTATTTCTAGTATTAGAGGTAGTCAGCACT
CCTCAACTTGATGTATACTTTATTGGAGAATCTTCTCAGAAAGTTGAACTTATTCAGGTT
AAAGTGGTACATACTCTCATAGAGAGCAGATAAGAACTTTGTTACCTGTCACAGAAACAG
TTTACTAGATTTCAAAGTCCAAATCTGAGAATGACCAGCCTGTGATTGTGGGGTGCCATA
CAGTGCTTTTAAATCCAGGGAAAAAACTGTATCACCAAAGCTTTTGTCTTGGTTTTCTTT
ACGTATGTAACTTTGTGGAACCAACCTTATTCGATGGGACCCACGGGTAATTGATTTTTA
ACTCTGACACCAAGAGAGAATATCAATACATTATTTAATCCAGCCTTTGTCTCCGAAAGC
CTAGTGCCCATTGTAGAATAGCGTTCTTCTATTAGGACCAGCAGAGTTTGGGTTGTTAAA
AATGATGAGTGTTTACTCTTTTACTGGAGTGTGAATATGTCAGCATTTTAAGATTTGTTT
TAAAACACTGAAAATATTGACTTGATCTTGAAGAACTCAATTGCTAGGAATCAGTTTATC
CTATACTCTTCTGTGTGGTTTGTGCTGTCTTTTGTTGTTTACGTGCTCCTCTGCCCAGAT
TGATAATACTATAGGGTTCCCTTTGAAGCTGATAGAATAATTCAGCCTTTTTTTCCTCAA
GTATTGATCATGACTTTAAACATTCCTAAGAATATAGGTATTTCTTAATGATTTAAATTG
GGATTTTAATTATAGAGAAGTATTTAATATAGTATACTCTGCCCACACACATCTCTTCTC
CATCGTGCCCTTATATTTCTCAACCTATACTCTGCTTTTAATGCTACTCCTTTTATTTAA
TTTTTTGTTTTGTTTGTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTGGCTTTAC
CTGCAGCATATGGATATTCTCCGGCCAGGGATCAAACCCAAGCCGCAGCAGTGATAATAC
TGGGTCCATAACCCCCTGAGCTATAGGGGAACTCCATATGCTACTCCTTTTAGAAACTGA
AGAGTCTAGTTTTACTGATTTCTTTGTGTTAATAAACATTTTGAATGTGTACCCTGCATA
TGTGAACAATTAAATTATGACCTGTCAGTCATAGCTAAGTAATCAACTTCAAAGTGTTGA
TGTCCTTTGACCATTTATGTGAGGTTTGCTATTATAGCATTTCTGTCTGTGGCTGTAAAT
TATGTGCATTTACTTCGTATTTATGTTAACTAGCTGAATTTTATTTGAATTGTTAAAATT
TAAAAAATTAAAATATGCTTATGAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TTCTTTGTGCAACAACTGGAAAGGAGCAGTGAAGTTTATTTTAATTGTTGTTTTTTTTCC
CCCAAAGTACAATCTGTTGTTTATGTAGGACAAAAATAATTTTAAAAAGAAAACTTTATA
TAAAAATTGTTTATGAAGTTTCTCTGAAACATTTCTTTGGAATTTTTTTAGATTGATGCA
AATGCTTAAAAAGAAAAACGCATACCTAAAGCATTGGACTTCTTTAAAAGAAAACTTTTA
TTTTTTATGTATTTCCTGTCAGTTAACTTTTTATTTCTAGTATTAGAGGTAGTCAGCACT
CCTCAACTTGATGTATACTTTATTGGAGAATCTTCTCAGAAAGTTGAACTTATTCAGGTT
AAAGTGGTACATACTCTCATAGAGAGCAGATAAGAACTTTGTTACCTGTCACAGAAACAG
TTTACTAGATTTCAAAGTCCAAATCTGAGAATGACCAGCCTGTGATTGTGGGGTGCCATA
CAGTGCTTTTAAATCCAGGGAAAAAACTGTATCACCAAAGCTTTTGTCTTGGTTTTCTTT
ACGTATGTAACTTTGTGGAACCAACCTTATTCGATGGGACCCACGGGTAATTGATTTTTA
ACTCTGACACCAAGAGAGAATATCAATACATTATTTAATCCAGCCTTTGTCTCCGAAAGC
CTAGTGCCCATTGTAGAATAGCGTTCTTCTATTAGGACCAGCAGAGTTTGGGTTGTTAAA
AATGATGAGTGTTTACTCTTTTACTGGAGTGTGAATATGTCAGCATTTTAAGATTTGTTT
TAAAACACTGAAAATATTGACTTGATCTTGAAGAACTCAATTGCTAGGAATCAGTTTATC
CTATACTCTTCTGTGTGGTTTGTGCTGTCTTTTGTTGTTTACGTGCTCCTCTGCCCAGAT
TGATAATACTATAGGGTTCCCTTTGAAGCTGATAGAATAATTCAGCCTTTTTTTCCTCAA
GTATTGATCATGACTTTAAACATTCCTAAGAATATAGGTATTTCTTAATGATTTAAATTG
GGATTTTAATTATAGAGAAGTATTTAATATAGTATACTCTGCCCACACACATCTCTTCTC
CATCGTGCCCTTATATTTCTCAACCTATACTCTGCTTTTAATGCTACTCCTTTTATTTAA
TTTTTTGTTTTGTTTGTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTGGCTTTAC
CTGCAGCATATGGATATTCTCCGGCCAGGGATCAAACCCAAGCCGCAGCAGTGATAATAC
TGGGTCCATAACCCCCTGAGCTATAGGGGAACTCCATATGCTACTCCTTTTAGAAACTGA
AGAGTCTAGTTTTACTGATTTCTTTGTGTTAATAAACATTTTGAATGTGTACCCTGCATA
TGTGAACAATTAAATTATGACCTGTCAGTCATAGCTAAGTAATCAACTTCAAAGTGTTGA
TGTCCTTTGACCATTTATGTGAGGTTTGCTATTATAGCATTTCTGTCTGTGGCTGTAAAT
TATGTGCATTTACTTCGTATTTATGTTAACTAGCTGAATTTTATTTGAATTGTTAAAATT
TAAAAAATTAAAATATGCTTATGAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-1135, gnl|bosTau2|chr1 (80253238-80252092) |
|
1-1135, gnl|Hg17|chr3 (142180254-142181215) |
|
1-1135, gnl|Mm7|chr9 (96718596-96717472) |
| |
|
1297-1587, gnl|bosTau2|chr1 (80252107-80251823) |
|
1297-1587, gnl|canFam2|chr23 (40006693-40006907) |
|
1297-1587, gnl|echTel1|scaffold_317498 (33191-32980) |
|
1297-1587, gnl|hg17|chr19 (61591044-61591246) |
|
1297-1587, gnl|Hg17|chr3 (142181200-142181479) |
|
1297-1587, gnl|loxAfr1|scaffold_27072 (19506-19293) |
|
1297-1587, gnl|mm7|chr9 (96717494-96717291) |
|
1297-1587, gnl|Mm7|chr9 (96717487-96717214) |
|
1297-1587, gnl|oryCun1|scaffold_206101 (7640-7425) |
|
1297-1587, gnl|panTro1|chr20 (59140266-59140468) |
|
1297-1587, gnl|rheMac2|chr19 (62376523-62376728) |
|
1297-1587, gnl|rn3|chr19 (34878908-34878712) |
|
1297-1587, gnl|xenTro1|scaffold_1880 (69639-69416) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-1135, gnl|bosTau2|chr1 (80253238-80252092) |
|
1-1135, gnl|Hg17|chr3 (142180254-142181215) |
|
1-1135, gnl|Mm7|chr9 (96718596-96717472) |
| |
|
1297-1587, gnl|bosTau2|chr1 (80252107-80251823) |
|
1297-1587, gnl|canFam2|chr23 (40006693-40006907) |
|
1297-1587, gnl|echTel1|scaffold_317498 (33191-32980) |
|
1297-1587, gnl|hg17|chr19 (61591044-61591246) |
|
1297-1587, gnl|Hg17|chr3 (142181200-142181479) |
|
1297-1587, gnl|loxAfr1|scaffold_27072 (19506-19293) |
|
1297-1587, gnl|mm7|chr9 (96717494-96717291) |
|
1297-1587, gnl|Mm7|chr9 (96717487-96717214) |
|
1297-1587, gnl|oryCun1|scaffold_206101 (7640-7425) |
|
1297-1587, gnl|panTro1|chr20 (59140266-59140468) |
|
1297-1587, gnl|rheMac2|chr19 (62376523-62376728) |
|
1297-1587, gnl|rn3|chr19 (34878908-34878712) |
|
1297-1587, gnl|xenTro1|scaffold_1880 (69639-69416) |
|
csk (0.422238) |
|
tbr (0.308356) |
|
fat (0.294855) |
|
spl (0.286369) |
|
ova (0.258264) |
|
sug (0.254582) |
|
thg (0.253582) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
eye (0.170503) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
csk (0.422238) |
|
tbr (0.308356) |
|
fat (0.294855) |
|
spl (0.286369) |
|
ova (0.258264) |
|
sug (0.254582) |
|
thg (0.253582) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
sto (0.179824) |
|
gul (0.177588) |
|
eye (0.170503) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
hyp (0.142837) |
|
lnt (0.142308) |
|
nmm (0.132802) |
|
kid (0.129735) |
|
clu (0.119646) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
