Non-Coding RNA Search

Ss1.1-Pig4-TMW8024G12.3

Sequence:


               
               TATATGTAGAAGGTCCAGTAAACTTTCTCTCTCTCTTTTAAGCAAAATGACTCATTTTAG
GTCCAATATTGAGCTGACAGATCTACTGTGAGAATGAGCTGACGTATCTACTGTGAGAAT
AACATAATGATAGTTTATTTGAAAACTTCTGTACACAGTGGTGTTTATATATCCAGATAA
ATATATAAACACGTATGCATGCATGCATCACATCTCTCTACTGTAGAGGTAATGTGAATT
TTTAAATTTTAAATGGAATTGCAACCACAATCATTGCTAAAAGAACATTCACTCCTAGTG
AGGGTTTACAAAAGCCACTAAAAGAATAAGGTAGACAGATAAAAATGCAAAGGGCCATCA
TTTGGGGTTATTTTTATTTAAAAATTTATTGTGCTACTTTTGAAAGAGAATTGTTTTTAT
TACTACGTTCTTTGTGATTGGAAAGTCATCTAATAGTAAGCAGTGCAGTAATAGGAAGCT
ACTTTTTAATTGCTGGCAAACAGCTTTAAGTGCACTTTCTTTTATTACACTTCCATTTTT
TGTTAAACTTGAATTTTCTGAAGCCTTTTATGTACCACTAAGCAATTAACTTTAACTTTT
AATAAACCTGATTTACATCTTTATTATATTTCTAATTGCTAAAAAAACATACTTTCTAAA
GTTCAGTCCTCAAATATAGCTGGGAAACTTATGAGATAGAATCACTTGCTGTTTTTTTCT
TCTTTTATCTAATTAAGCACTAACAGATTTTAGTACTATATTGCCTTTATGTCGCTTATT
CTTATTGACTGAAATTTGTCCCTCATTCACTTTGTTTGAAATTTAAAGTTATTTTCTTAC
TGTATTTATCATACCTACTGTTTTAATAATCTGCATTCTTTAAATGCAATAAATCCCAAG
TGGATTGCATATTCTTTTTAATCAATGACTTCAGAGTTTTTCATTATTCGCCATCATCTT
ATTAAAAGTTTGGGATGCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATATGTAGAAGGTCCAGTAAACTTTCTCTCTCTCTTTTAAGCAAAATGACTCATTTTAG
GTCCAATATTGAGCTGACAGATCTACTGTGAGAATGAGCTGACGTATCTACTGTGAGAAT
AACATAATGATAGTTTATTTGAAAACTTCTGTACACAGTGGTGTTTATATATCCAGATAA
ATATATAAACACGTATGCATGCATGCATCACATCTCTCTACTGTAGAGGTAATGTGAATT
TTTAAATTTTAAATGGAATTGCAACCACAATCATTGCTAAAAGAACATTCACTCCTAGTG
AGGGTTTACAAAAGCCACTAAAAGAATAAGGTAGACAGATAAAAATGCAAAGGGCCATCA
TTTGGGGTTATTTTTATTTAAAAATTTATTGTGCTACTTTTGAAAGAGAATTGTTTTTAT
TACTACGTTCTTTGTGATTGGAAAGTCATCTAATAGTAAGCAGTGCAGTAATAGGAAGCT
ACTTTTTAATTGCTGGCAAACAGCTTTAAGTGCACTTTCTTTTATTACACTTCCATTTTT
TGTTAAACTTGAATTTTCTGAAGCCTTTTATGTACCACTAAGCAATTAACTTTAACTTTT
AATAAACCTGATTTACATCTTTATTATATTTCTAATTGCTAAAAAAACATACTTTCTAAA
GTTCAGTCCTCAAATATAGCTGGGAAACTTATGAGATAGAATCACTTGCTGTTTTTTTCT
TCTTTTATCTAATTAAGCACTAACAGATTTTAGTACTATATTGCCTTTATGTCGCTTATT
CTTATTGACTGAAATTTGTCCCTCATTCACTTTGTTTGAAATTTAAAGTTATTTTCTTAC
TGTATTTATCATACCTACTGTTTTAATAATCTGCATTCTTTAAATGCAATAAATCCCAAG
TGGATTGCATATTCTTTTTAATCAATGACTTCAGAGTTTTTCATTATTCGCCATCATCTT
ATTAAAAGTTTGGGATGCAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-981, gnl|bosTau2|chr19 (35909439-35908433)
               

               
               1-981, gnl|Hg17|chr4 (80193769-80194752)
               

               
               1-981, gnl|Mm7|chr5 (96304196-96305275)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-981, gnl|bosTau2|chr19 (35909439-35908433)
               

               
               1-981, gnl|Hg17|chr4 (80193769-80194752)
               

               
               1-981, gnl|Mm7|chr5 (96304196-96305275)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               tra (0.246184)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.246184)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	1-981, gnl\|bosTau2\|chr19 (35909439-35908433)
	1-981, gnl\|Hg17\|chr4 (80193769-80194752)
	1-981, gnl\|Mm7\|chr5 (96304196-96305275)

	tra (0.246184)
	ill (0.175593)
	eye (0.170503)
	liv (0.146284)
	hyp (0.142837)
	nca (0.136874)
	kid (0.129735)
	eru (0.120048)
	jej (0.0989218)