Non-Coding RNA Search

Ss1.1-Pig4-TMW8024H06.3

Sequence:


               
               GCTATTGCAGAAGAAAGGTCAGCCAAGCGCTCTGGGCCTGATCGACTGTATATAGGAGCT
TCTGATTTCAACCAGAAGCTAACTCTCTCCGAAACAATGAGTTATACAACTTATTTCTTA
GCTTTTCAGCTTTGCGTGACTTTGTGTTTTTCTGGCTCTTACTGCCAGGCGCCCTTTTTT
AAAGAAATAACGATCCTAAAGGACTATTTTAATGCAAGTACCTCAGATGTACCTAATGGT
GGACCTCTTTTCTTAGAAATTTTGAAGAATTGGAAAGAGGAGAGTGACAAAAAAATAATT
CAGAGCCAAATTGTCTCCTTCTACTTCAAATTCTTTGAAATCTTCAAAGATAACCAGGCC
ATTCAAAGGAGCATGGATGTGATCAAGCAAGACATGTTTCAGAGGTTCCTAAATGGTAGC
TCTGGGAAACTGAATGACTTCGAAAAGCTGATTAAAATTCCGGTAGATAATCTGCAGATC
CAGCGCAAAGCCATCAGTGAACTCATCAAAGTGATGAATGATCTGTCACCAAGATCTAAC
CTAAGAAAGCGGAAGAGAAGTCAGACTATGTTCCAAGGCCAGAGAGCATCAAAATAATTG
TCATCCTGCCTGCAATATTTGAATTTTTAAATCTCAATCTATTTATTAATATTTAATATT
TTACATTATTTATATGGGGAATATTGATTCATTGATCAAAGTATTTATAATGTAACTTTT
ATGTGATGAAAATGGGTATCTATTAACATATGTGTTATTTATGATTCCTGTATCCTGTGA
CTATTTCACTTGACCCTCTATTTTCTCTGATTAACTAGGCAAATCTATGTTTTACAAGGC
TTTTTCTCAGGGGCCAACTAGGTAGCTGACCTAAGCAAGACTCTGTGGGTTGTGTGTTTA
TTTCACTTGATGGAATAATGAATGTTTATAAATGAAATGATGCCATCCCATTGCTGCCTA
TTTGAGACTATGTCTGTCTTCTGAGCCACTGCTTTGATGGCATGTCAGACAGCACTTGAA
TGTGTCAGGTGATATGACTTGTACCCTGATAAAAACATAGCATCTCATCTCATGCCTGGT
GCCTCAGAATATTACTGAAAACTGTGATTTCACCCAATGGAAAATAATACACTTGTTTAT
CAATATTTAATATGCACAAATAAAGTATAATTTCAGCACTAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTATTGCAGAAGAAAGGTCAGCCAAGCGCTCTGGGCCTGATCGACTGTATATAGGAGCT
TCTGATTTCAACCAGAAGCTAACTCTCTCCGAAACAATGAGTTATACAACTTATTTCTTA
GCTTTTCAGCTTTGCGTGACTTTGTGTTTTTCTGGCTCTTACTGCCAGGCGCCCTTTTTT
AAAGAAATAACGATCCTAAAGGACTATTTTAATGCAAGTACCTCAGATGTACCTAATGGT
GGACCTCTTTTCTTAGAAATTTTGAAGAATTGGAAAGAGGAGAGTGACAAAAAAATAATT
CAGAGCCAAATTGTCTCCTTCTACTTCAAATTCTTTGAAATCTTCAAAGATAACCAGGCC
ATTCAAAGGAGCATGGATGTGATCAAGCAAGACATGTTTCAGAGGTTCCTAAATGGTAGC
TCTGGGAAACTGAATGACTTCGAAAAGCTGATTAAAATTCCGGTAGATAATCTGCAGATC
CAGCGCAAAGCCATCAGTGAACTCATCAAAGTGATGAATGATCTGTCACCAAGATCTAAC
CTAAGAAAGCGGAAGAGAAGTCAGACTATGTTCCAAGGCCAGAGAGCATCAAAATAATTG
TCATCCTGCCTGCAATATTTGAATTTTTAAATCTCAATCTATTTATTAATATTTAATATT
TTACATTATTTATATGGGGAATATTGATTCATTGATCAAAGTATTTATAATGTAACTTTT
ATGTGATGAAAATGGGTATCTATTAACATATGTGTTATTTATGATTCCTGTATCCTGTGA
CTATTTCACTTGACCCTCTATTTTCTCTGATTAACTAGGCAAATCTATGTTTTACAAGGC
TTTTTCTCAGGGGCCAACTAGGTAGCTGACCTAAGCAAGACTCTGTGGGTTGTGTGTTTA
TTTCACTTGATGGAATAATGAATGTTTATAAATGAAATGATGCCATCCCATTGCTGCCTA
TTTGAGACTATGTCTGTCTTCTGAGCCACTGCTTTGATGGCATGTCAGACAGCACTTGAA
TGTGTCAGGTGATATGACTTGTACCCTGATAAAAACATAGCATCTCATCTCATGCCTGGT
GCCTCAGAATATTACTGAAAACTGTGATTTCACCCAATGGAAAATAATACACTTGTTTAT
CAATATTTAATATGCACAAATAAAGTATAATTTCAGCACTAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|33641700|gb|AAQ24335.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|33641700|gb|AAQ24335.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               12-122, - strand, RNAz p=0.92406
               

               
               77-210, + strand, RNAz p=0.913321

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               12-122, - strand, RNAz p=0.92406
               

               
               77-210, + strand, RNAz p=0.913321

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_000619, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_000619, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-210, gnl|bosTau2|chr5 (27391869-27392078)
               

               
               1-210, gnl|canFam2|chr10 (13396023-13396670)
               

               
               1-210, gnl|dasNov1|scaffold_128456 (646-4)
               

               
               1-210, gnl|echTel1|scaffold_311997 (83956-84573)
               

               
               1-210, gnl|hg17|chr12 (66839357-66840006)
               

               
               1-210, gnl|Hg17|chr12 (66839761-66839549)
               

               
               1-210, gnl|loxAfr1|scaffold_10326 (4765-5401)
               

               
               1-210, gnl|mm7|chr10 (117836759-117836124)
               

               
               1-210, gnl|Mm7|chr10 (117836369-117836567)
               

               
               1-210, gnl|oryCun1|scaffold_165331 (14898-14245)
               

               
               1-210, gnl|panTro1|chr10 (68370880-68371529)
               

               
               1-210, gnl|rheMac2|chr11 (65147917-65148564)
               

               
               1-210, gnl|rn3|chr7 (57642783-57642154)
               


               
               462-1181, gnl|bosTau2|chr5 (27395966-27396696)
               

               
               462-1181, gnl|Hg17|chr12 (66835535-66834815)
               

               
               462-1181, gnl|Mm7|chr10 (117840455-117841195)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-210, gnl|bosTau2|chr5 (27391869-27392078)
               

               
               1-210, gnl|canFam2|chr10 (13396023-13396670)
               

               
               1-210, gnl|dasNov1|scaffold_128456 (646-4)
               

               
               1-210, gnl|echTel1|scaffold_311997 (83956-84573)
               

               
               1-210, gnl|hg17|chr12 (66839357-66840006)
               

               
               1-210, gnl|Hg17|chr12 (66839761-66839549)
               

               
               1-210, gnl|loxAfr1|scaffold_10326 (4765-5401)
               

               
               1-210, gnl|mm7|chr10 (117836759-117836124)
               

               
               1-210, gnl|Mm7|chr10 (117836369-117836567)
               

               
               1-210, gnl|oryCun1|scaffold_165331 (14898-14245)
               

               
               1-210, gnl|panTro1|chr10 (68370880-68371529)
               

               
               1-210, gnl|rheMac2|chr11 (65147917-65148564)
               

               
               1-210, gnl|rn3|chr7 (57642783-57642154)
               


               
               462-1181, gnl|bosTau2|chr5 (27395966-27396696)
               

               
               462-1181, gnl|Hg17|chr12 (66835535-66834815)
               

               
               462-1181, gnl|Mm7|chr10 (117840455-117841195)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               clu (0.598229)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.598229)
               

               
               lnt (0.142308)
               

               
               cty (0.10408)

	12-122, - strand, RNAz p=0.92406
	77-210, + strand, RNAz p=0.913321

	1-210, gnl\|bosTau2\|chr5 (27391869-27392078)
	1-210, gnl\|canFam2\|chr10 (13396023-13396670)
	1-210, gnl\|dasNov1\|scaffold_128456 (646-4)
	1-210, gnl\|echTel1\|scaffold_311997 (83956-84573)
	1-210, gnl\|hg17\|chr12 (66839357-66840006)
	1-210, gnl\|Hg17\|chr12 (66839761-66839549)
	1-210, gnl\|loxAfr1\|scaffold_10326 (4765-5401)
	1-210, gnl\|mm7\|chr10 (117836759-117836124)
	1-210, gnl\|Mm7\|chr10 (117836369-117836567)
	1-210, gnl\|oryCun1\|scaffold_165331 (14898-14245)
	1-210, gnl\|panTro1\|chr10 (68370880-68371529)
	1-210, gnl\|rheMac2\|chr11 (65147917-65148564)
	1-210, gnl\|rn3\|chr7 (57642783-57642154)

	462-1181, gnl\|bosTau2\|chr5 (27395966-27396696)
	462-1181, gnl\|Hg17\|chr12 (66835535-66834815)
	462-1181, gnl\|Mm7\|chr10 (117840455-117841195)