Ss1.1-Pig4-TMW8024H13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTTGGCTTCTCGACTCGGTCCTGTTTCGACAGCGAACATGTCTCGGCCTGTCAGAAAT AGGAAGGTCGTTCAGCGGCCCTATCGGCCGAAGTTGGGGGGGGTGGGGCGCCGAGCGCGC GGGGTGGGGGGGGTCCTGGTCTTTGGCTTCTCGACTCGGTCCTGTTTCGACAGCGAACAT GTCTCGGCCTGTCAGAAATAGGAAGGTCGTTGATTATTCACAATTTCAGGAATCTGATGA TGCTGATGAAGATTATGGGAGAGATTCGGGCCCTCCCGCTAAGAAAATTCGATCATCTCC CCGAGAAGCTAAAAATAAGAGACGATCCGGAAAGAATTCCCAGGAAGATAGTGAGGACTC CGAAGAAAAAGATGTGAAGACCAAGAAGGATGATTCTCATTCGGCAGAGGACAGTGAAGA TGAAAAAGAAGATCATAAAAATGTGCGCCAGCAACGGCAGGCAGCCTCTAAAGCAGCCTC TAAACAGAGGGAGATGCTTATGGAGGATGTGGGCAGCGAAGAAGAGCAAGAAGAAGAGGA TGAGGCGCCCTTCCAGGAGAAAGATTCCGGCAGTGATGAGGATTTCCTAATGGAAGACGA TGATGATAGTGACTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCCAA ACCTGAGAGAAAAGAAAAGAAAATGCCCAAACCCAGGCTAAAGGCCACAGTGACGCCAAG TCCTGTGAAAGGCAAAGGGAAAGCGGGTCGTCCCACAGCTTCAAAGGCATCAAAGGAAAA GACTCCTTCTCCCAAAGAAGAAGACGAGGAGCCGGAAAGCCCTCCAGAAAAGAAGACATC TGCAAGCCCTCCACCTGAGAAATCTGGAGATGAAGGGTCTGAAGATGAAGCCCAGTCTGG GGAGGATTAAAAGTGATGATGGTTTGGGGAGAGATTTTATTAAAAAAAAAAAAGAGAGAA AAAAAAAAGAAAAAAGAAAAAAGAGGGAAAAAAAAAAAGAAAACCTACTTAAGATAGAAT ATGGTTTTGGCTATGGCTTGACTCATGGGCTTTCAGTGCTTTTTTTTTTTCCTTTTATCG AAAATAACATTTTCTCTTTCTCTCTCTTTTTTTAAGAAAACCATTGTATGTTTAATTTAC CTTTTTTTGTCTATTGGTCTTCTCTTTGTCACTCCCCCCTCTTCCCCCTCCCCCCCTTCC CAATGAAAGCCATGTTAAATTAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTTGGCTTCTCGACTCGGTCCTGTTTCGACAGCGAACATGTCTCGGCCTGTCAGAAAT AGGAAGGTCGTTCAGCGGCCCTATCGGCCGAAGTTGGGGGGGGTGGGGCGCCGAGCGCGC GGGGTGGGGGGGGTCCTGGTCTTTGGCTTCTCGACTCGGTCCTGTTTCGACAGCGAACAT GTCTCGGCCTGTCAGAAATAGGAAGGTCGTTGATTATTCACAATTTCAGGAATCTGATGA TGCTGATGAAGATTATGGGAGAGATTCGGGCCCTCCCGCTAAGAAAATTCGATCATCTCC CCGAGAAGCTAAAAATAAGAGACGATCCGGAAAGAATTCCCAGGAAGATAGTGAGGACTC CGAAGAAAAAGATGTGAAGACCAAGAAGGATGATTCTCATTCGGCAGAGGACAGTGAAGA TGAAAAAGAAGATCATAAAAATGTGCGCCAGCAACGGCAGGCAGCCTCTAAAGCAGCCTC TAAACAGAGGGAGATGCTTATGGAGGATGTGGGCAGCGAAGAAGAGCAAGAAGAAGAGGA TGAGGCGCCCTTCCAGGAGAAAGATTCCGGCAGTGATGAGGATTTCCTAATGGAAGACGA TGATGATAGTGACTATGGCAGTTCAAAAAAGAAAAACAAAAAGATGGTTAAGAAGTCCAA ACCTGAGAGAAAAGAAAAGAAAATGCCCAAACCCAGGCTAAAGGCCACAGTGACGCCAAG TCCTGTGAAAGGCAAAGGGAAAGCGGGTCGTCCCACAGCTTCAAAGGCATCAAAGGAAAA GACTCCTTCTCCCAAAGAAGAAGACGAGGAGCCGGAAAGCCCTCCAGAAAAGAAGACATC TGCAAGCCCTCCACCTGAGAAATCTGGAGATGAAGGGTCTGAAGATGAAGCCCAGTCTGG GGAGGATTAAAAGTGATGATGGTTTGGGGAGAGATTTTATTAAAAAAAAAAAAGAGAGAA AAAAAAAAGAAAAAAGAAAAAAGAGGGAAAAAAAAAAAGAAAACCTACTTAAGATAGAAT ATGGTTTTGGCTATGGCTTGACTCATGGGCTTTCAGTGCTTTTTTTTTTTCCTTTTATCG AAAATAACATTTTCTCTTTCTCTCTCTTTTTTTAAGAAAACCATTGTATGTTTAATTTAC CTTTTTTTGTCTATTGGTCTTCTCTTTGTCACTCCCCCCTCTTCCCCCTCCCCCCCTTCC CAATGAAAGCCATGTTAAATTAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 676-938, - strand, RNAz p=0.932982 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 676-938, - strand, RNAz p=0.932982 |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 73-195, gnl|bosTau2|chr16 (3006848-3006726) | |
| 73-195, gnl|canFam2|chr38 (5188130-5188252) | |
| 73-195, gnl|dasNov1|scaffold_4410 (9452-9325) | |
| 73-195, gnl|echTel1|scaffold_279977 (40406-40528) | |
| 73-195, gnl|galGal2|chr26 (874038-874210) | |
| 73-195, gnl|hg17|chr1 (202450722-202450845) | |
| 73-195, gnl|Hg17|chr1 (202450865-202450742) | |
| 73-195, gnl|loxAfr1|scaffold_5402 (49232-49355) | |
| 73-195, gnl|mm7|chr1 (131806236-131806118) | |
| 73-195, gnl|Mm7|chr1 (131806096-131806214) | |
| 73-195, gnl|monDom2|scaffold_13 (7606275-7606397) | |
| 73-195, gnl|oryCun1|scaffold_109924 (1857-1772) | |
| 73-195, gnl|panTro1|chr1 (185411243-185411316) | |
| 73-195, gnl|rheMac2|chr1 (164665580-164665457) | |
| 73-195, gnl|rn3|chr6 (142910441-142910344) | |
| 245-351, gnl|bosTau2|chr16 (2988371-2988265) | |
| 245-351, gnl|canFam2|chr38 (5167826-5167936) | |
| 245-351, gnl|danRer3|chr11 (41060671-41060567) | |
| 245-351, gnl|dasNov1|scaffold_15018 (3492-3391) | |
| 245-351, gnl|echTel1|scaffold_317787 (52873-52983) | |
| 245-351, gnl|galGal2|chr26 (865889-865999) | |
| 245-351, gnl|hg17|chr1 (202428486-202428596) | |
| 245-351, gnl|Hg17|chr1 (202428591-202428485) | |
| 245-351, gnl|loxAfr1|scaffold_99291 (4893-4991) | |
| 245-351, gnl|mm7|chr1 (131817514-131817404) | |
| 245-351, gnl|Mm7|chr1 (131817407-131817513) | |
| 245-351, gnl|monDom2|scaffold_13 (7575977-7576087) | |
| 245-351, gnl|oryCun1|scaffold_210492 (100032-99922) | |
| 245-351, gnl|panTro1|chr1 (185388997-185389107) | |
| 245-351, gnl|rheMac2|chr1 (164687366-164687256) | |
| 245-351, gnl|rn3|chr6 (142910597-142910492) | |
| 245-351, gnl|xenTro1|scaffold_19 (3838830-3838937) | |
| 404-560, gnl|bosTau2|chr16 (2983001-2982845) | |
| 404-560, gnl|canFam2|chr38 (5162835-5162999) | |
| 404-560, gnl|danRer3|chr11 (41065054-41064890) | |
| 404-560, gnl|dasNov1|scaffold_4410 (31971-31807) | |
| 404-560, gnl|echTel1|scaffold_302507 (39121-39243) | |
| 404-560, gnl|fr1|chrUn (172994689-172994850) | |
| 404-560, gnl|galGal2|chr26 (862842-862999) | |
| 404-560, gnl|hg17|chr1 (202421280-202421444) | |
| 404-560, gnl|Hg17|chr1 (202421442-202421286) | |
| 404-560, gnl|loxAfr1|scaffold_5402 (22143-22277) | |
| 404-560, gnl|mm7|chr1 (131823689-131823525) | |
| 404-560, gnl|Mm7|chr1 (131823525-131823681) | |
| 404-560, gnl|monDom2|scaffold_13 (7564987-7565151) | |
| 404-560, gnl|oryCun1|scaffold_199578 (46632-46796) | |
| 404-560, gnl|panTro1|chr1 (185381761-185381925) | |
| 404-560, gnl|rheMac2|chr1 (164694608-164694444) | |
| 404-560, gnl|rn3|chr6 (142910806-142910654) | |
| 404-560, gnl|tetNig1|chrUn_random (106012588-106012427) | |
| 404-560, gnl|xenTro1|scaffold_19 (3836703-3836861) | |
| 596-1224, gnl|bosTau2|chr14 (18863335-18862707) | |
| 596-1224, gnl|Hg17|chr1 (223905354-223904722) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 73-195, gnl|bosTau2|chr16 (3006848-3006726) | |
| 73-195, gnl|canFam2|chr38 (5188130-5188252) | |
| 73-195, gnl|dasNov1|scaffold_4410 (9452-9325) | |
| 73-195, gnl|echTel1|scaffold_279977 (40406-40528) | |
| 73-195, gnl|galGal2|chr26 (874038-874210) | |
| 73-195, gnl|hg17|chr1 (202450722-202450845) | |
| 73-195, gnl|Hg17|chr1 (202450865-202450742) | |
| 73-195, gnl|loxAfr1|scaffold_5402 (49232-49355) | |
| 73-195, gnl|mm7|chr1 (131806236-131806118) | |
| 73-195, gnl|Mm7|chr1 (131806096-131806214) | |
| 73-195, gnl|monDom2|scaffold_13 (7606275-7606397) | |
| 73-195, gnl|oryCun1|scaffold_109924 (1857-1772) | |
| 73-195, gnl|panTro1|chr1 (185411243-185411316) | |
| 73-195, gnl|rheMac2|chr1 (164665580-164665457) | |
| 73-195, gnl|rn3|chr6 (142910441-142910344) | |
| 245-351, gnl|bosTau2|chr16 (2988371-2988265) | |
| 245-351, gnl|canFam2|chr38 (5167826-5167936) | |
| 245-351, gnl|danRer3|chr11 (41060671-41060567) | |
| 245-351, gnl|dasNov1|scaffold_15018 (3492-3391) | |
| 245-351, gnl|echTel1|scaffold_317787 (52873-52983) | |
| 245-351, gnl|galGal2|chr26 (865889-865999) | |
| 245-351, gnl|hg17|chr1 (202428486-202428596) | |
| 245-351, gnl|Hg17|chr1 (202428591-202428485) | |
| 245-351, gnl|loxAfr1|scaffold_99291 (4893-4991) | |
| 245-351, gnl|mm7|chr1 (131817514-131817404) | |
| 245-351, gnl|Mm7|chr1 (131817407-131817513) | |
| 245-351, gnl|monDom2|scaffold_13 (7575977-7576087) | |
| 245-351, gnl|oryCun1|scaffold_210492 (100032-99922) | |
| 245-351, gnl|panTro1|chr1 (185388997-185389107) | |
| 245-351, gnl|rheMac2|chr1 (164687366-164687256) | |
| 245-351, gnl|rn3|chr6 (142910597-142910492) | |
| 245-351, gnl|xenTro1|scaffold_19 (3838830-3838937) | |
| 404-560, gnl|bosTau2|chr16 (2983001-2982845) | |
| 404-560, gnl|canFam2|chr38 (5162835-5162999) | |
| 404-560, gnl|danRer3|chr11 (41065054-41064890) | |
| 404-560, gnl|dasNov1|scaffold_4410 (31971-31807) | |
| 404-560, gnl|echTel1|scaffold_302507 (39121-39243) | |
| 404-560, gnl|fr1|chrUn (172994689-172994850) | |
| 404-560, gnl|galGal2|chr26 (862842-862999) | |
| 404-560, gnl|hg17|chr1 (202421280-202421444) | |
| 404-560, gnl|Hg17|chr1 (202421442-202421286) | |
| 404-560, gnl|loxAfr1|scaffold_5402 (22143-22277) | |
| 404-560, gnl|mm7|chr1 (131823689-131823525) | |
| 404-560, gnl|Mm7|chr1 (131823525-131823681) | |
| 404-560, gnl|monDom2|scaffold_13 (7564987-7565151) | |
| 404-560, gnl|oryCun1|scaffold_199578 (46632-46796) | |
| 404-560, gnl|panTro1|chr1 (185381761-185381925) | |
| 404-560, gnl|rheMac2|chr1 (164694608-164694444) | |
| 404-560, gnl|rn3|chr6 (142910806-142910654) | |
| 404-560, gnl|tetNig1|chrUn_random (106012588-106012427) | |
| 404-560, gnl|xenTro1|scaffold_19 (3836703-3836861) | |
| 596-1224, gnl|bosTau2|chr14 (18863335-18862707) | |
| 596-1224, gnl|Hg17|chr1 (223905354-223904722) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| pro (0.512033) | |
| che (0.408942) | |
| ste (0.405625) | |
| elu (0.385356) | |
| sto (0.359648) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| cut (0.339847) | |
| cty (0.31224) | |
| lun (0.300978) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| med (0.116252) | |
| jej (0.0989218) | |
| ldo (0.0970026) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (0.512033) | |
| che (0.408942) | |
| ste (0.405625) | |
| elu (0.385356) | |
| sto (0.359648) | |
| pgl (0.35545) | |
| ebs (0.354904) | |
| cut (0.339847) | |
| cty (0.31224) | |
| lun (0.300978) | |
| fce (0.271592) | |
| ecc (0.23007) | |
| tes (0.207814) | |
| fli (0.202881) | |
| eje (0.197668) | |
| fty (0.17584) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| bla (0.124347) | |
| med (0.116252) | |
| jej (0.0989218) | |
| ldo (0.0970026) |