Ss1.1-Pig4-TMW8024I01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTACAATGCACTCAGATCTTGGGAAAATTATTCAGAGTCTCTTGGATGAGTTTTGGAAGA ATCCTCCAGTTTTAGCTCCCGCTTCAACAGCATTTCCATACCTGTATGGTAACCCAAGTG GGATGCCTCCTTATGCTTCTCAGGGTTTTCCATTTCTTCCTCCATATCCGCCACAAGAAG CTAACAGGACTATCAGTTCTTTATCTGTTGCTGACACTGTTTCTTCTTCAACGACAAGTT ATACAACAGCCAAACCTGCTGCTCCTTCATTTGGTGTCCTTTCAAATCTGCCATTGCCTG TTCCCACAACAGACACTTCAGCACCGATAAGCCAAAATGGTTCTGGTTACAAGATGCCTG ATGTCCCTGATGCATTTCCAGAACTCTCAGAACTAAGTGTTTCACAACTTACAGATATGA ATGAACAAGAGGAAGTATTACTAGAACAGTTTCTGACTTTGCCTCAACTAAAACAAATCA TTACTGACAAGGATGACTTAGTAAAAAATATTGAGGAGCTAGCAAGAAAAAATCTCCTTT TGGAGCCCAGCTTAGAAGCCAAAAGGCAAAGTGTTTTAGATAAGTATGAATTACTTACAC AAATGAAATCTACTTTTGAAAAGAAGATGCAGAGGCAGCATGAACTTAGTGAGAGCTGTA GTGCGAGTGCCCTACAGGCGAGATTGAAAGTAGCTGCACATGAAGCCGAGGAAGAATCTG ATAATATTGCGGAAGATTTCTTGGAGGGAAAAACTGATATAGATGATTTTCTCAGTAGCT TCATGGAAAAAAGAACAATTTACCACTGTAGAAGAGCCAAAGAAGAAAAGCTTCAACAAG TGATAGCAATGCACAGCCAGTTTCATGCTCCACTCTAGATTTTCCTGAAAACATGAACTG CCAAGAGAGGAATGGGACATGAAACAAAGCACATTTTATATATTTATGATTTGCAAATTG GCATTTCATCACAGTGGCTGAATTCATAGATGTACTATATAGATCGTGTACAGCACTGAA ACTGATTTTGTACAGATTAGAATGATTGCTGTGATCTTTGCTTTAGAAATTTTCTGCACT ATTTGCACTAAAAATGTTTATTTATTGTTGATAAATCCTATCATATTTAAGTTCCACCGC TATTCTTCTCATTGATTAAATACCTATGCATGTAATTTTAGCTAGTTTCAATATTTTAAA AAATTACTTCATTTAAATTTGTATTTTTAATTTGAAATTGCCTCATTTCTTTATCAAAGA GTGGTTTGTTTAGATTTTTTTCATTTCAACTTTTTTTGAAAAACTGCTATTTCAACTATA GAAAGACTCTATTTTTCCTCTTTCTTTCTGGATGATAAACCTTTCTTTTCGAACATAATT TGTTTTTACAACACCAAACCTGCCAATGTGCAATCTCAAGGAAGTAACTTTTAATACATA CAATAAATCAAAAGAATAAACCAGCTGTTTTTATATATTGTTTATTTTTAAAGTTAAAGA TACTAATAAAGGTAGATAAATATTTTACGTAATGGATAAAACTGCTTTTCACTTAAACTA GTGCAGCATAAACTTTCATGTTAACTTTCCAAATATAAGTATCTGATTGGTTTGTCGATA GATGAAGATATGCTCTCTAAATTCCCGATGTTAAAATTTAAAACAGTATTTTTGTTAATA AATAGTAAATCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTACAATGCACTCAGATCTTGGGAAAATTATTCAGAGTCTCTTGGATGAGTTTTGGAAGA ATCCTCCAGTTTTAGCTCCCGCTTCAACAGCATTTCCATACCTGTATGGTAACCCAAGTG GGATGCCTCCTTATGCTTCTCAGGGTTTTCCATTTCTTCCTCCATATCCGCCACAAGAAG CTAACAGGACTATCAGTTCTTTATCTGTTGCTGACACTGTTTCTTCTTCAACGACAAGTT ATACAACAGCCAAACCTGCTGCTCCTTCATTTGGTGTCCTTTCAAATCTGCCATTGCCTG TTCCCACAACAGACACTTCAGCACCGATAAGCCAAAATGGTTCTGGTTACAAGATGCCTG ATGTCCCTGATGCATTTCCAGAACTCTCAGAACTAAGTGTTTCACAACTTACAGATATGA ATGAACAAGAGGAAGTATTACTAGAACAGTTTCTGACTTTGCCTCAACTAAAACAAATCA TTACTGACAAGGATGACTTAGTAAAAAATATTGAGGAGCTAGCAAGAAAAAATCTCCTTT TGGAGCCCAGCTTAGAAGCCAAAAGGCAAAGTGTTTTAGATAAGTATGAATTACTTACAC AAATGAAATCTACTTTTGAAAAGAAGATGCAGAGGCAGCATGAACTTAGTGAGAGCTGTA GTGCGAGTGCCCTACAGGCGAGATTGAAAGTAGCTGCACATGAAGCCGAGGAAGAATCTG ATAATATTGCGGAAGATTTCTTGGAGGGAAAAACTGATATAGATGATTTTCTCAGTAGCT TCATGGAAAAAAGAACAATTTACCACTGTAGAAGAGCCAAAGAAGAAAAGCTTCAACAAG TGATAGCAATGCACAGCCAGTTTCATGCTCCACTCTAGATTTTCCTGAAAACATGAACTG CCAAGAGAGGAATGGGACATGAAACAAAGCACATTTTATATATTTATGATTTGCAAATTG GCATTTCATCACAGTGGCTGAATTCATAGATGTACTATATAGATCGTGTACAGCACTGAA ACTGATTTTGTACAGATTAGAATGATTGCTGTGATCTTTGCTTTAGAAATTTTCTGCACT ATTTGCACTAAAAATGTTTATTTATTGTTGATAAATCCTATCATATTTAAGTTCCACCGC TATTCTTCTCATTGATTAAATACCTATGCATGTAATTTTAGCTAGTTTCAATATTTTAAA AAATTACTTCATTTAAATTTGTATTTTTAATTTGAAATTGCCTCATTTCTTTATCAAAGA GTGGTTTGTTTAGATTTTTTTCATTTCAACTTTTTTTGAAAAACTGCTATTTCAACTATA GAAAGACTCTATTTTTCCTCTTTCTTTCTGGATGATAAACCTTTCTTTTCGAACATAATT TGTTTTTACAACACCAAACCTGCCAATGTGCAATCTCAAGGAAGTAACTTTTAATACATA CAATAAATCAAAAGAATAAACCAGCTGTTTTTATATATTGTTTATTTTTAAAGTTAAAGA TACTAATAAAGGTAGATAAATATTTTACGTAATGGATAAAACTGCTTTTCACTTAAACTA GTGCAGCATAAACTTTCATGTTAACTTTCCAAATATAAGTATCTGATTGGTTTGTCGATA GATGAAGATATGCTCTCTAAATTCCCGATGTTAAAATTTAAAACAGTATTTTTGTTAATA AATAGTAAATCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 678-797, + strand, RNAz p=0.967932 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 678-797, + strand, RNAz p=0.967932 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AL834189, + |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 101-326, gnl|bosTau2|chr27 (12663690-12663465) | |
| 101-326, gnl|canFam2|chr16 (43569222-43569447) | |
| 101-326, gnl|canFam2|chr16 (43569226-43569382) | |
| 101-326, gnl|dasNov1|scaffold_6801 (1374-1601) | |
| 101-326, gnl|dasNov1|scaffold_6801 (1377-1533) | |
| 101-326, gnl|echTel1|scaffold_274006 (655-503) | |
| 101-326, gnl|echTel1|scaffold_293710 (13015-12788) | |
| 101-326, gnl|fr1|chrUn (213058721-213058507) | |
| 101-326, gnl|galGal2|chr4 (63639427-63639195) | |
| 101-326, gnl|galGal2|chr4 (63639424-63639277) | |
| 101-326, gnl|hg17|chr5 (153853725-153853882) | |
| 101-326, gnl|hg17|chr8 (17176608-17176838) | |
| 101-326, gnl|Hg17|chr8 (17176613-17176838) | |
| 101-326, gnl|mm7|chr8 (39327394-39327624) | |
| 101-326, gnl|mm7|chr8 (39327400-39327556) | |
| 101-326, gnl|Mm7|chr8 (39327399-39327624) | |
| 101-326, gnl|monDom2|scaffold_32 (13456957-13456732) | |
| 101-326, gnl|monDom2|scaffold_32 (13456953-13456800) | |
| 101-326, gnl|oryCun1|scaffold_190192 (20111-19877) | |
| 101-326, gnl|oryCun1|scaffold_190192 (20101-19945) | |
| 101-326, gnl|panTro1|chr4 (160777284-160777441) | |
| 101-326, gnl|panTro1|chr7 (17936300-17936530) | |
| 101-326, gnl|rheMac2|chr6 (150864153-150864377) | |
| 101-326, gnl|rheMac2|chr6 (150864153-150864309) | |
| 101-326, gnl|rn3|chr16 (55088828-55088595) | |
| 101-326, gnl|rn3|chr16 (55088822-55088663) | |
| 101-326, gnl|xenTro1|scaffold_979 (318551-318357) | |
| 101-326, gnl|xenTro1|scaffold_979 (318543-318407) | |
| 396-526, gnl|bosTau2|chr27 (12660304-12660174) | |
| 396-526, gnl|canFam2|chr16 (43574533-43574663) | |
| 396-526, gnl|dasNov1|scaffold_6801 (5045-5174) | |
| 396-526, gnl|echTel1|scaffold_274006 (364-237) | |
| 396-526, gnl|fr1|chrUn (213058242-213058092) | |
| 396-526, gnl|galGal2|chr4 (63636069-63635939) | |
| 396-526, gnl|hg17|chr5 (153854021-153854151) | |
| 396-526, gnl|Hg17|chr8 (17181906-17182036) | |
| 396-526, gnl|loxAfr1|scaffold_21912 (23019-22889) | |
| 396-526, gnl|mm7|chr8 (39331207-39331337) | |
| 396-526, gnl|Mm7|chr8 (39331206-39331336) | |
| 396-526, gnl|monDom2|scaffold_32 (13447183-13447053) | |
| 396-526, gnl|oryCun1|scaffold_190192 (12684-12554) | |
| 396-526, gnl|panTro1|chr4 (160777580-160777710) | |
| 396-526, gnl|rheMac2|chr6 (150864448-150864577) | |
| 396-526, gnl|rn3|chr16 (55085399-55085269) | |
| 396-526, gnl|tetNig1|chr18 (5149351-5149122) | |
| 396-526, gnl|xenTro1|scaffold_979 (317607-317477) | |
| 645-797, gnl|bosTau2|chr27 (12657518-12657366) | |
| 645-797, gnl|Hg17|chr8 (17186344-17186496) | |
| 645-797, gnl|Mm7|chr8 (39334324-39334482) | |
| 877-1689, gnl|bosTau2|chr27 (12653894-12653069) | |
| 877-1689, gnl|Hg17|chr8 (17196865-17197666) | |
| 877-1689, gnl|Mm7|chr8 (39336803-39337788) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-326, gnl|bosTau2|chr27 (12663690-12663465) | |
| 101-326, gnl|canFam2|chr16 (43569222-43569447) | |
| 101-326, gnl|canFam2|chr16 (43569226-43569382) | |
| 101-326, gnl|dasNov1|scaffold_6801 (1374-1601) | |
| 101-326, gnl|dasNov1|scaffold_6801 (1377-1533) | |
| 101-326, gnl|echTel1|scaffold_274006 (655-503) | |
| 101-326, gnl|echTel1|scaffold_293710 (13015-12788) | |
| 101-326, gnl|fr1|chrUn (213058721-213058507) | |
| 101-326, gnl|galGal2|chr4 (63639427-63639195) | |
| 101-326, gnl|galGal2|chr4 (63639424-63639277) | |
| 101-326, gnl|hg17|chr5 (153853725-153853882) | |
| 101-326, gnl|hg17|chr8 (17176608-17176838) | |
| 101-326, gnl|Hg17|chr8 (17176613-17176838) | |
| 101-326, gnl|mm7|chr8 (39327394-39327624) | |
| 101-326, gnl|mm7|chr8 (39327400-39327556) | |
| 101-326, gnl|Mm7|chr8 (39327399-39327624) | |
| 101-326, gnl|monDom2|scaffold_32 (13456957-13456732) | |
| 101-326, gnl|monDom2|scaffold_32 (13456953-13456800) | |
| 101-326, gnl|oryCun1|scaffold_190192 (20111-19877) | |
| 101-326, gnl|oryCun1|scaffold_190192 (20101-19945) | |
| 101-326, gnl|panTro1|chr4 (160777284-160777441) | |
| 101-326, gnl|panTro1|chr7 (17936300-17936530) | |
| 101-326, gnl|rheMac2|chr6 (150864153-150864377) | |
| 101-326, gnl|rheMac2|chr6 (150864153-150864309) | |
| 101-326, gnl|rn3|chr16 (55088828-55088595) | |
| 101-326, gnl|rn3|chr16 (55088822-55088663) | |
| 101-326, gnl|xenTro1|scaffold_979 (318551-318357) | |
| 101-326, gnl|xenTro1|scaffold_979 (318543-318407) | |
| 396-526, gnl|bosTau2|chr27 (12660304-12660174) | |
| 396-526, gnl|canFam2|chr16 (43574533-43574663) | |
| 396-526, gnl|dasNov1|scaffold_6801 (5045-5174) | |
| 396-526, gnl|echTel1|scaffold_274006 (364-237) | |
| 396-526, gnl|fr1|chrUn (213058242-213058092) | |
| 396-526, gnl|galGal2|chr4 (63636069-63635939) | |
| 396-526, gnl|hg17|chr5 (153854021-153854151) | |
| 396-526, gnl|Hg17|chr8 (17181906-17182036) | |
| 396-526, gnl|loxAfr1|scaffold_21912 (23019-22889) | |
| 396-526, gnl|mm7|chr8 (39331207-39331337) | |
| 396-526, gnl|Mm7|chr8 (39331206-39331336) | |
| 396-526, gnl|monDom2|scaffold_32 (13447183-13447053) | |
| 396-526, gnl|oryCun1|scaffold_190192 (12684-12554) | |
| 396-526, gnl|panTro1|chr4 (160777580-160777710) | |
| 396-526, gnl|rheMac2|chr6 (150864448-150864577) | |
| 396-526, gnl|rn3|chr16 (55085399-55085269) | |
| 396-526, gnl|tetNig1|chr18 (5149351-5149122) | |
| 396-526, gnl|xenTro1|scaffold_979 (317607-317477) | |
| 645-797, gnl|bosTau2|chr27 (12657518-12657366) | |
| 645-797, gnl|Hg17|chr8 (17186344-17186496) | |
| 645-797, gnl|Mm7|chr8 (39334324-39334482) | |
| 877-1689, gnl|bosTau2|chr27 (12653894-12653069) | |
| 877-1689, gnl|Hg17|chr8 (17196865-17197666) | |
| 877-1689, gnl|Mm7|chr8 (39336803-39337788) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| kid (0.389206) | |
| sug (0.381874) | |
| lin (0.291206) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| tes (0.207814) | |
| sto (0.179824) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (0.389206) | |
| sug (0.381874) | |
| lin (0.291206) | |
| mgp (0.230681) | |
| spc (0.226732) | |
| tes (0.207814) | |
| sto (0.179824) | |
| eli (0.151814) | |
| cag (0.151194) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) |