Ss1.1-Pig4-TMW8024I04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGGGGAGGCGCGGCTGGAGGAGGCAGTCAACCGCTGGGTGCTCAAGTTCTACTTCCAC GAGGCGCTGCGGGCCTTTCGGGGTAGCCGGTACGAGGACTTCAGGCAGATCCGGGACATC ATGCAGGCTTTGCTTGTCAGGCCCTTGGGGAAGGAGCATACCGTGTCTCGGCTGCTGCGG GTTATGCAGTGTCTGTCGCGCATTGAAGAAGGGGAGAATTTAGACTGTTCCTTTGATATG GAGGCTGAGCTCACACCACTGGAATCAGCTATCAATGTGCTGGAGATGATTAAAACGGAA TTTACACTGACAGAGGCAGTGGTGGAATCCAGTAGAAAACTGGTCAAGGAGGCTGCAGTC ATTATTTGTATCAAAAACAAAGAATTTGAAAAAGCTTCAAAAATTTTGAAAAAGCATATG TCCAAGGACCCCACAACTCAGAAGCTGAGAAATGATCTGCTGAACATTATCCGTGAAAAG AACTTGGCCCACCCCGTTATCCAGAACTTTTCCTACGAGACCTTCCAGCAAAAGATGCTG CGCTTCCTGGAGAGTCACTTGGATGATGCAGAGCCCTACCTCCTCACGATGGCCAAAAAG GCTTTGAAATCTGAGTCCTCCACTTCATCCACAGTGAAGGAAGATAAACAGCCAGCACCA GAACCTGTGGAAAAGCCACTCAGAGAACCTGCAAGGCAGCTACAGAATACTCCCACCACC ATTGGAATCATGACTTTGAAAGCAGCTTTCAAGACTCTGTCCAGTGCACAAGATTCTGAG GCAGCTTTCTCAAAATTGGACCAGAAAGATATGGTACTTCCTAGTAAAGTGTGCCCACCG TCACCAGCCCTCAAAAACAAGAGACCGAGGAAAGATGAAAATGAAAGTTCAGCCCCTGCT GAGGGTGAGGGTGGCTCTGAACTGCAGCCCAAGAACAAGCGCATGACAATAAGCAGATTG GTTCTGGAGGAGGACAGCCAGAGTACTGAGCCCACCGCAGGCCTCGACTCCTCCCAGGAG GGCATTCCGGCGTCACCACCCAAACCCACCATCCTCAACCAACCCCTCCCTGGGGAGAAG AATCCCAAAGTACCTAAAGGCAAGTGGAACAGCTCCAATGGGGTTGAAGAAAAAGAGACC TGGGTGGAAGAGGATGAACTGTTTCAAGTTCATGCAACACGAGATGAAGAGAGTGCAACC AATATAACAAGAAAGCAGAAGTGGACTGTAGAAGAAAGCGAGTGGGTCAAGGCTGGAGTG CAGAAGTATGGGGAAGGAAACTGGGCTGCCATTTCCAAAAACTACCCATTTGTTAACCGA ACAGCTGTGATGATTAAGGATCGCTGGCGGACCATGAAAAGACTTGGCATGAACTGAAAC TAGCTTTCACTGCCACAGAATTCACAGGAGCATGGTTCCTAATAATAGCCCCTGAGAGTC TGCTGTTTCTTTCCGAAGCTGGGCTGGGATGAGAATGTTGGGCATCCTCCTCCCATGTGG AGGAGGTCCCAGTTCCACGACATCATGTTGGAGATCATGAAGCTGAGAAAGCCAAGTCCA CCCCATGTCCTTGGCAGAGATGACAGGCACATAGCTTGTACAGTGCCAGAATACCATTAG TATTTCCCTTCTTTAGTGGTTTGCTTGAATTTAAATCCCCGGTAATCAGTAGAACCTTCT CCTAGGAAACAGTGGAGTCTGTTAGGAGCCACTTTTGACTCTATATGACCTGCTAAAACC AGCAACATGAGCATTATTTGGAGTGCATTTGTTCCAGGTAAAGTTTTGGCCTTCTGATGC AAATGCAAAGGTACTTCGTCTGTCCTGAGCCCAGGTTGATGAGACCAGTCCTGGTGGAAT CAGAGTCCCTTTAAAAACTGTTTAGCCACTTGTGACATCAACAGCTAGACCTGACTGCCT TGGCATTTGCGCTTTCTATTTGCTGGGCTATGTAGGCAGGTTTAACCTCCACTTCTCACG TGGTTGAACCAGTGTGTTTTTTTTGGTAAAATGGTGATTGTAGATAAGCTTAGCCCCTCC CCCTGTCCTCTCTTCCCAATTCCCTTCTTTATCCTGGACTTTTAAAGCTTAAAAATCCTG ATTGAGTATAAATGCCTAATTCCATTCTTTGTGAAATGGTTGCTTCCACCCGATTCCCTG ATTGTGCTGTGTTAATGTCTTGCACTGGAATTCAACATTCCCTTCTCCTTTTGTACCGTG TTGTGCTTGCTGTCTCTCTCAGACATCCTTAAAGACTGTCTTTTTAGCGAAAAAAGAATT TCAGTAAAGTGTTTTCTGTAATCTTTTTTTAAAATGAGAACTAATTATTGTCCATAACTT GTAGCATTCATTAAAGTCTTGCTTCTCTCAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGGGGAGGCGCGGCTGGAGGAGGCAGTCAACCGCTGGGTGCTCAAGTTCTACTTCCAC GAGGCGCTGCGGGCCTTTCGGGGTAGCCGGTACGAGGACTTCAGGCAGATCCGGGACATC ATGCAGGCTTTGCTTGTCAGGCCCTTGGGGAAGGAGCATACCGTGTCTCGGCTGCTGCGG GTTATGCAGTGTCTGTCGCGCATTGAAGAAGGGGAGAATTTAGACTGTTCCTTTGATATG GAGGCTGAGCTCACACCACTGGAATCAGCTATCAATGTGCTGGAGATGATTAAAACGGAA TTTACACTGACAGAGGCAGTGGTGGAATCCAGTAGAAAACTGGTCAAGGAGGCTGCAGTC ATTATTTGTATCAAAAACAAAGAATTTGAAAAAGCTTCAAAAATTTTGAAAAAGCATATG TCCAAGGACCCCACAACTCAGAAGCTGAGAAATGATCTGCTGAACATTATCCGTGAAAAG AACTTGGCCCACCCCGTTATCCAGAACTTTTCCTACGAGACCTTCCAGCAAAAGATGCTG CGCTTCCTGGAGAGTCACTTGGATGATGCAGAGCCCTACCTCCTCACGATGGCCAAAAAG GCTTTGAAATCTGAGTCCTCCACTTCATCCACAGTGAAGGAAGATAAACAGCCAGCACCA GAACCTGTGGAAAAGCCACTCAGAGAACCTGCAAGGCAGCTACAGAATACTCCCACCACC ATTGGAATCATGACTTTGAAAGCAGCTTTCAAGACTCTGTCCAGTGCACAAGATTCTGAG GCAGCTTTCTCAAAATTGGACCAGAAAGATATGGTACTTCCTAGTAAAGTGTGCCCACCG TCACCAGCCCTCAAAAACAAGAGACCGAGGAAAGATGAAAATGAAAGTTCAGCCCCTGCT GAGGGTGAGGGTGGCTCTGAACTGCAGCCCAAGAACAAGCGCATGACAATAAGCAGATTG GTTCTGGAGGAGGACAGCCAGAGTACTGAGCCCACCGCAGGCCTCGACTCCTCCCAGGAG GGCATTCCGGCGTCACCACCCAAACCCACCATCCTCAACCAACCCCTCCCTGGGGAGAAG AATCCCAAAGTACCTAAAGGCAAGTGGAACAGCTCCAATGGGGTTGAAGAAAAAGAGACC TGGGTGGAAGAGGATGAACTGTTTCAAGTTCATGCAACACGAGATGAAGAGAGTGCAACC AATATAACAAGAAAGCAGAAGTGGACTGTAGAAGAAAGCGAGTGGGTCAAGGCTGGAGTG CAGAAGTATGGGGAAGGAAACTGGGCTGCCATTTCCAAAAACTACCCATTTGTTAACCGA ACAGCTGTGATGATTAAGGATCGCTGGCGGACCATGAAAAGACTTGGCATGAACTGAAAC TAGCTTTCACTGCCACAGAATTCACAGGAGCATGGTTCCTAATAATAGCCCCTGAGAGTC TGCTGTTTCTTTCCGAAGCTGGGCTGGGATGAGAATGTTGGGCATCCTCCTCCCATGTGG AGGAGGTCCCAGTTCCACGACATCATGTTGGAGATCATGAAGCTGAGAAAGCCAAGTCCA CCCCATGTCCTTGGCAGAGATGACAGGCACATAGCTTGTACAGTGCCAGAATACCATTAG TATTTCCCTTCTTTAGTGGTTTGCTTGAATTTAAATCCCCGGTAATCAGTAGAACCTTCT CCTAGGAAACAGTGGAGTCTGTTAGGAGCCACTTTTGACTCTATATGACCTGCTAAAACC AGCAACATGAGCATTATTTGGAGTGCATTTGTTCCAGGTAAAGTTTTGGCCTTCTGATGC AAATGCAAAGGTACTTCGTCTGTCCTGAGCCCAGGTTGATGAGACCAGTCCTGGTGGAAT CAGAGTCCCTTTAAAAACTGTTTAGCCACTTGTGACATCAACAGCTAGACCTGACTGCCT TGGCATTTGCGCTTTCTATTTGCTGGGCTATGTAGGCAGGTTTAACCTCCACTTCTCACG TGGTTGAACCAGTGTGTTTTTTTTGGTAAAATGGTGATTGTAGATAAGCTTAGCCCCTCC CCCTGTCCTCTCTTCCCAATTCCCTTCTTTATCCTGGACTTTTAAAGCTTAAAAATCCTG ATTGAGTATAAATGCCTAATTCCATTCTTTGTGAAATGGTTGCTTCCACCCGATTCCCTG ATTGTGCTGTGTTAATGTCTTGCACTGGAATTCAACATTCCCTTCTCCTTTTGTACCGTG TTGTGCTTGCTGTCTCTCTCAGACATCCTTAAAGACTGTCTTTTTAGCGAAAAAAGAATT TCAGTAAAGTGTTTTCTGTAATCTTTTTTTAAAATGAGAACTAATTATTGTCCATAACTT GTAGCATTCATTAAAGTCTTGCTTCTCTCAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 1-156, gnl|bosTau2|chr18 (13820262-13820413) | |
| 1-156, gnl|canFam2|chr5 (83286997-83286741) | |
| 1-156, gnl|dasNov1|scaffold_5707 (53506-53766) | |
| 1-156, gnl|echTel1|scaffold_325190 (84621-84883) | |
| 1-156, gnl|hg17|chr16 (67976947-67977207) | |
| 1-156, gnl|Hg17|chr16 (67977123-67976972) | |
| 1-156, gnl|mm7|chr8 (105696218-105696469) | |
| 1-156, gnl|Mm7|chr8 (105696385-105696245) | |
| 1-156, gnl|monDom2|scaffold_23 (4883701-4883448) | |
| 1-156, gnl|oryCun1|scaffold_124918 (3604-3843) | |
| 1-156, gnl|panTro1|chr18 (62319326-62319586) | |
| 1-156, gnl|rheMac2|chr20 (67763155-67763415) | |
| 1-156, gnl|rn3|chr19 (36963143-36963391) | |
| 221-370, gnl|bosTau2|chr18 (13821246-13821396) | |
| 221-370, gnl|canFam2|chr5 (83288086-83287710) | |
| 221-370, gnl|hg17|chr16 (67975811-67976200) | |
| 221-370, gnl|Hg17|chr16 (67976117-67975968) | |
| 221-370, gnl|loxAfr1|scaffold_13715 (1153-741) | |
| 221-370, gnl|mm7|chr8 (105694812-105695173) | |
| 221-370, gnl|Mm7|chr8 (105695092-105694935) | |
| 221-370, gnl|monDom2|scaffold_23 (4886434-4886072) | |
| 221-370, gnl|oryCun1|scaffold_137805 (21209-20833) | |
| 221-370, gnl|panTro1|chr18 (62318191-62318579) | |
| 221-370, gnl|rheMac2|chr20 (67761977-67762363) | |
| 221-370, gnl|rn3|chr19 (36961717-36962117) | |
| 440-592, gnl|bosTau2|chr18 (13832294-13832446) | |
| 440-592, gnl|canFam2|chr5 (83300297-83300194) | |
| 440-592, gnl|dasNov1|scaffold_5707 (41290-41393) | |
| 440-592, gnl|echTel1|scaffold_319253 (101919-102021) | |
| 440-592, gnl|hg17|chr16 (67961877-67961980) | |
| 440-592, gnl|Hg17|chr16 (67962035-67961883) | |
| 440-592, gnl|loxAfr1|scaffold_13715 (11361-11259) | |
| 440-592, gnl|mm7|chr8 (105681216-105681323) | |
| 440-592, gnl|Mm7|chr8 (105681378-105681226) | |
| 440-592, gnl|monDom2|scaffold_23 (4896087-4895990) | |
| 440-592, gnl|oryCun1|scaffold_205766 (2906-2797) | |
| 440-592, gnl|panTro1|chr18 (62304143-62304246) | |
| 440-592, gnl|rheMac2|chr20 (67747906-67748009) | |
| 440-592, gnl|rn3|chr19 (36949067-36949170) | |
| 694-1088, gnl|bosTau2|chr18 (13834245-13834639) | |
| 694-1088, gnl|canFam2|chr5 (83305012-83304438) | |
| 694-1088, gnl|dasNov1|scaffold_5707 (38429-38996) | |
| 694-1088, gnl|echTel1|scaffold_325190 (69651-70265) | |
| 694-1088, gnl|hg17|chr16 (67958115-67958696) | |
| 694-1088, gnl|Hg17|chr16 (67958605-67958211) | |
| 694-1088, gnl|loxAfr1|scaffold_13715 (16348-15775) | |
| 694-1088, gnl|mm7|chr8 (105676651-105677227) | |
| 694-1088, gnl|Mm7|chr8 (105677135-105676747) | |
| 694-1088, gnl|monDom2|scaffold_23 (4899436-4898843) | |
| 694-1088, gnl|oryCun1|scaffold_205766 (9413-8840) | |
| 694-1088, gnl|panTro1|chr18 (62300259-62300840) | |
| 694-1088, gnl|rheMac2|chr20 (67744036-67744617) | |
| 694-1088, gnl|rn3|chr19 (36943861-36944440) | |
| 1215-2372, gnl|bosTau2|chr18 (13841111-13842270) | |
| 1215-2372, gnl|Hg17|chr16 (67948464-67946970) | |
| 1215-2372, gnl|Mm7|chr8 (105670706-105669536) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-156, gnl|bosTau2|chr18 (13820262-13820413) | |
| 1-156, gnl|canFam2|chr5 (83286997-83286741) | |
| 1-156, gnl|dasNov1|scaffold_5707 (53506-53766) | |
| 1-156, gnl|echTel1|scaffold_325190 (84621-84883) | |
| 1-156, gnl|hg17|chr16 (67976947-67977207) | |
| 1-156, gnl|Hg17|chr16 (67977123-67976972) | |
| 1-156, gnl|mm7|chr8 (105696218-105696469) | |
| 1-156, gnl|Mm7|chr8 (105696385-105696245) | |
| 1-156, gnl|monDom2|scaffold_23 (4883701-4883448) | |
| 1-156, gnl|oryCun1|scaffold_124918 (3604-3843) | |
| 1-156, gnl|panTro1|chr18 (62319326-62319586) | |
| 1-156, gnl|rheMac2|chr20 (67763155-67763415) | |
| 1-156, gnl|rn3|chr19 (36963143-36963391) | |
| 221-370, gnl|bosTau2|chr18 (13821246-13821396) | |
| 221-370, gnl|canFam2|chr5 (83288086-83287710) | |
| 221-370, gnl|hg17|chr16 (67975811-67976200) | |
| 221-370, gnl|Hg17|chr16 (67976117-67975968) | |
| 221-370, gnl|loxAfr1|scaffold_13715 (1153-741) | |
| 221-370, gnl|mm7|chr8 (105694812-105695173) | |
| 221-370, gnl|Mm7|chr8 (105695092-105694935) | |
| 221-370, gnl|monDom2|scaffold_23 (4886434-4886072) | |
| 221-370, gnl|oryCun1|scaffold_137805 (21209-20833) | |
| 221-370, gnl|panTro1|chr18 (62318191-62318579) | |
| 221-370, gnl|rheMac2|chr20 (67761977-67762363) | |
| 221-370, gnl|rn3|chr19 (36961717-36962117) | |
| 440-592, gnl|bosTau2|chr18 (13832294-13832446) | |
| 440-592, gnl|canFam2|chr5 (83300297-83300194) | |
| 440-592, gnl|dasNov1|scaffold_5707 (41290-41393) | |
| 440-592, gnl|echTel1|scaffold_319253 (101919-102021) | |
| 440-592, gnl|hg17|chr16 (67961877-67961980) | |
| 440-592, gnl|Hg17|chr16 (67962035-67961883) | |
| 440-592, gnl|loxAfr1|scaffold_13715 (11361-11259) | |
| 440-592, gnl|mm7|chr8 (105681216-105681323) | |
| 440-592, gnl|Mm7|chr8 (105681378-105681226) | |
| 440-592, gnl|monDom2|scaffold_23 (4896087-4895990) | |
| 440-592, gnl|oryCun1|scaffold_205766 (2906-2797) | |
| 440-592, gnl|panTro1|chr18 (62304143-62304246) | |
| 440-592, gnl|rheMac2|chr20 (67747906-67748009) | |
| 440-592, gnl|rn3|chr19 (36949067-36949170) | |
| 694-1088, gnl|bosTau2|chr18 (13834245-13834639) | |
| 694-1088, gnl|canFam2|chr5 (83305012-83304438) | |
| 694-1088, gnl|dasNov1|scaffold_5707 (38429-38996) | |
| 694-1088, gnl|echTel1|scaffold_325190 (69651-70265) | |
| 694-1088, gnl|hg17|chr16 (67958115-67958696) | |
| 694-1088, gnl|Hg17|chr16 (67958605-67958211) | |
| 694-1088, gnl|loxAfr1|scaffold_13715 (16348-15775) | |
| 694-1088, gnl|mm7|chr8 (105676651-105677227) | |
| 694-1088, gnl|Mm7|chr8 (105677135-105676747) | |
| 694-1088, gnl|monDom2|scaffold_23 (4899436-4898843) | |
| 694-1088, gnl|oryCun1|scaffold_205766 (9413-8840) | |
| 694-1088, gnl|panTro1|chr18 (62300259-62300840) | |
| 694-1088, gnl|rheMac2|chr20 (67744036-67744617) | |
| 694-1088, gnl|rn3|chr19 (36943861-36944440) | |
| 1215-2372, gnl|bosTau2|chr18 (13841111-13842270) | |
| 1215-2372, gnl|Hg17|chr16 (67948464-67946970) | |
| 1215-2372, gnl|Mm7|chr8 (105670706-105669536) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| cty (0.5204) | |
| spl (0.429553) | |
| col (0.390016) | |
| ebs (0.354904) | |
| jej (0.197844) | |
| fty (0.17584) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.5204) | |
| spl (0.429553) | |
| col (0.390016) | |
| ebs (0.354904) | |
| jej (0.197844) | |
| fty (0.17584) | |
| rec (0.17307) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lun (0.150489) | |
| ssp (0.13552) | |
| ese (0.126502) | |
| bla (0.124347) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| nbm (0.0993246) |