Ss1.1-Pig4-TMW8024I06.3
|
AGTGGCCTCAGCCCCCAGCCTGCCACGCTCCGGCTCCCGCTCCCTCCCCCACCTCTCCTG
TGCTCCCGGCCGGCATGGGTCCCCGGCTGGGCTCGCTGCTCTCTGCCCTCCTGCTGCTTC
TTTACGTCGCGGGCACCGCGCACTGTGACACTCCTGCCAACTGCACCTATCCTGACCTGC
TGGGCACCTGGATCTTCCACGTGGGCCCTGGTGGTTCCCAGCGCGACGTCAACTGCTCGG
TTATGGGACCACCAGAAAAAAAAGTAGTGGTGCACCTTAAGAAGTTGGATACAGCATATG
ATGACTTTGGCAATTCTGGACGTTTCACCATCATTTACAATCAAGGTTTTGAGATTGTGC
TGAATGACTACAAGTGGTTTGCCTTTTTTAAGTATAAAGAAGAGGGCAGAAAGGTAACCA
GCTACTGCAATGAGACCATGACTGGCTGGGTGCATGACGTGCTGGGCCGGAACTGGGCTT
GCTTCACTGGAGAGAAGGCGGGAAATACCTTTGAAAAAGTGAACGTGAACACAGCACACC
TTAAGAGTCGCCAGAAAAAGTATTCTAATAGGCTCTACAAATACAACCATGACTTTGTGA
AAGCTATCAATGGCATTCAGAAGTCTTGGACTGCCACTGCGTACATGGAATATGAGACTC
TTACCCTGAAAGAGATGACTCAGAGAGGTGGTGGCTACAACCAGAGACTCCCACGGCCCA
AACCTGCACCAATAACTGCTGAAATACAGGAAAAGAGTTTGCATTTGCCAGCCTCCTGGG
ACTGGAGGAATGTTCGTGGTACCAATTTTGTTACTCCTGTTCGAAACCAAGCATCTTGTG
GGAGCTGCTACTCATTTGCTTCTATGGGGATGATGGAAGCAAGAATCCGTATACTAACCA
ACAATACTCAGACCCCAATCTTGAGTCCTCAGGAGGTTGTGTCATGCAGCCAGTATGCTC
AAGGCTGTGCAGGAGGCTTCCCATACCTCATCGCAGGAAAGTACGCCCAAGATTTTGGGC
TGGTGGAAGAGGCCTGCTTCCCCTACACAGGCACGGATTCACCATGCACAGTCAAAGAAG
GCTGCTTTCGTTACTACTCCTCTGAGTACCACTATGTGGGTGGTTTCTATGGGGGCTGCA
ATGAAGCCCTGATGAAGCTTGAGCTGGTCCATCATGGGCCCATGGCAGTTGCCTTTGAGG
TCTATGATGACTTCCTCCACTACCGCAAGGGGATCTACCACCACACTGGTCTGAGAGACC
CTTTCAACCCCTTTGAGTTGACCAATCACGCTGTCCTGCTGGTGGGCTATGGCACTGACT
TGGCCTCTGGAATGGATTACTGGATTGTTAAAAACAGCTGGGGCACTAGCTGGGGTGAGG
ATGGTTACTTCCGGATCCGCAGAGGAACTGATGAGTGTGCAATTGAAAGCATAGCGGTGG
CGGCCACACCAATTCCTAAATTGTAGAGTGTACCTCCCAGCATTTCATACTGACCACATC
AGTCATCAAACGAGACTGAGTTATTCACAGACTGTAGACTTTTACACTTAACATTTTCAG
ATTTCAGATAGATTCCTATGAAGATTTTGTGCTTTAAAATTAAAACTGCCCTTAATTTTA
ATATACCTTCCCATCAAACACCAGCACGTGATTAAGTGAGATTTTTGTGGATGATGGTGA
ATTGTAAGGTAATGAATTTTGAGAATCATTTGTAATTCAGATGCTATATTTTAAAAAATC
TATGTGAAAGTACAGCCTTATTTTTAAATTGTATAAACCATGAGAAAATATGGCAATGAT
TATTAAAATAAAAAACCTTTTGTAAATAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGTGGCCTCAGCCCCCAGCCTGCCACGCTCCGGCTCCCGCTCCCTCCCCCACCTCTCCTG
TGCTCCCGGCCGGCATGGGTCCCCGGCTGGGCTCGCTGCTCTCTGCCCTCCTGCTGCTTC
TTTACGTCGCGGGCACCGCGCACTGTGACACTCCTGCCAACTGCACCTATCCTGACCTGC
TGGGCACCTGGATCTTCCACGTGGGCCCTGGTGGTTCCCAGCGCGACGTCAACTGCTCGG
TTATGGGACCACCAGAAAAAAAAGTAGTGGTGCACCTTAAGAAGTTGGATACAGCATATG
ATGACTTTGGCAATTCTGGACGTTTCACCATCATTTACAATCAAGGTTTTGAGATTGTGC
TGAATGACTACAAGTGGTTTGCCTTTTTTAAGTATAAAGAAGAGGGCAGAAAGGTAACCA
GCTACTGCAATGAGACCATGACTGGCTGGGTGCATGACGTGCTGGGCCGGAACTGGGCTT
GCTTCACTGGAGAGAAGGCGGGAAATACCTTTGAAAAAGTGAACGTGAACACAGCACACC
TTAAGAGTCGCCAGAAAAAGTATTCTAATAGGCTCTACAAATACAACCATGACTTTGTGA
AAGCTATCAATGGCATTCAGAAGTCTTGGACTGCCACTGCGTACATGGAATATGAGACTC
TTACCCTGAAAGAGATGACTCAGAGAGGTGGTGGCTACAACCAGAGACTCCCACGGCCCA
AACCTGCACCAATAACTGCTGAAATACAGGAAAAGAGTTTGCATTTGCCAGCCTCCTGGG
ACTGGAGGAATGTTCGTGGTACCAATTTTGTTACTCCTGTTCGAAACCAAGCATCTTGTG
GGAGCTGCTACTCATTTGCTTCTATGGGGATGATGGAAGCAAGAATCCGTATACTAACCA
ACAATACTCAGACCCCAATCTTGAGTCCTCAGGAGGTTGTGTCATGCAGCCAGTATGCTC
AAGGCTGTGCAGGAGGCTTCCCATACCTCATCGCAGGAAAGTACGCCCAAGATTTTGGGC
TGGTGGAAGAGGCCTGCTTCCCCTACACAGGCACGGATTCACCATGCACAGTCAAAGAAG
GCTGCTTTCGTTACTACTCCTCTGAGTACCACTATGTGGGTGGTTTCTATGGGGGCTGCA
ATGAAGCCCTGATGAAGCTTGAGCTGGTCCATCATGGGCCCATGGCAGTTGCCTTTGAGG
TCTATGATGACTTCCTCCACTACCGCAAGGGGATCTACCACCACACTGGTCTGAGAGACC
CTTTCAACCCCTTTGAGTTGACCAATCACGCTGTCCTGCTGGTGGGCTATGGCACTGACT
TGGCCTCTGGAATGGATTACTGGATTGTTAAAAACAGCTGGGGCACTAGCTGGGGTGAGG
ATGGTTACTTCCGGATCCGCAGAGGAACTGATGAGTGTGCAATTGAAAGCATAGCGGTGG
CGGCCACACCAATTCCTAAATTGTAGAGTGTACCTCCCAGCATTTCATACTGACCACATC
AGTCATCAAACGAGACTGAGTTATTCACAGACTGTAGACTTTTACACTTAACATTTTCAG
ATTTCAGATAGATTCCTATGAAGATTTTGTGCTTTAAAATTAAAACTGCCCTTAATTTTA
ATATACCTTCCCATCAAACACCAGCACGTGATTAAGTGAGATTTTTGTGGATGATGGTGA
ATTGTAAGGTAATGAATTTTGAGAATCATTTGTAATTCAGATGCTATATTTTAAAAAATC
TATGTGAAAGTACAGCCTTATTTTTAAATTGTATAAACCATGAGAAAATATGGCAATGAT
TATTAAAATAAAAAACCTTTTGTAAATAAAAAAAAAAAAAAAAAAAAA
|
|
gi|61845459|ref|XP_581440.1| |
Protein identifier
|
gi|61845459|ref|XP_581440.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
Human gene identifier and UTR site,
human gene reading direction
|
246-392, gnl|bosTau2|chr29 (1857853-1857999) |
|
246-392, gnl|canFam2|chr21 (14656444-14656286) |
|
246-392, gnl|danRer3|chr24 (14024860-14024702) |
|
246-392, gnl|dasNov1|scaffold_132899 (367-530) |
|
246-392, gnl|echTel1|scaffold_266431 (7100-7263) |
|
246-392, gnl|fr1|chrUn (278268413-278268247) |
|
246-392, gnl|hg17|chr11 (87707752-87707918) |
|
246-392, gnl|Hg17|chr11 (87707899-87707753) |
|
246-392, gnl|loxAfr1|scaffold_438 (131231-131069) |
|
246-392, gnl|mm7|chr7 (84218599-84218436) |
|
246-392, gnl|Mm7|chr7 (84218450-84218596) |
|
246-392, gnl|monDom2|scaffold_118 (1939491-1939331) |
|
246-392, gnl|oryCun1|scaffold_213737 (122678-122841) |
|
246-392, gnl|panTro1|chr9 (89540803-89540968) |
|
246-392, gnl|rheMac2|chr14 (86527354-86527520) |
|
246-392, gnl|rn3|chr1 (144710928-144710765) |
|
246-392, gnl|tetNig1|chrUn_random (114691000-114690833) |
| |
|
560-716, gnl|bosTau2|chr29 (1881392-1881548) |
|
560-716, gnl|Hg17|chr11 (87682134-87681978) |
|
560-716, gnl|Mm7|chr7 (84236509-84236662) |
| |
|
962-1846, gnl|bosTau2|chr29 (1894282-1895208) |
|
962-1846, gnl|Hg17|chr11 (87667326-87666425) |
|
962-1846, gnl|Mm7|chr7 (84246462-84247359) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
246-392, gnl|bosTau2|chr29 (1857853-1857999) |
|
246-392, gnl|canFam2|chr21 (14656444-14656286) |
|
246-392, gnl|danRer3|chr24 (14024860-14024702) |
|
246-392, gnl|dasNov1|scaffold_132899 (367-530) |
|
246-392, gnl|echTel1|scaffold_266431 (7100-7263) |
|
246-392, gnl|fr1|chrUn (278268413-278268247) |
|
246-392, gnl|hg17|chr11 (87707752-87707918) |
|
246-392, gnl|Hg17|chr11 (87707899-87707753) |
|
246-392, gnl|loxAfr1|scaffold_438 (131231-131069) |
|
246-392, gnl|mm7|chr7 (84218599-84218436) |
|
246-392, gnl|Mm7|chr7 (84218450-84218596) |
|
246-392, gnl|monDom2|scaffold_118 (1939491-1939331) |
|
246-392, gnl|oryCun1|scaffold_213737 (122678-122841) |
|
246-392, gnl|panTro1|chr9 (89540803-89540968) |
|
246-392, gnl|rheMac2|chr14 (86527354-86527520) |
|
246-392, gnl|rn3|chr1 (144710928-144710765) |
|
246-392, gnl|tetNig1|chrUn_random (114691000-114690833) |
| |
|
560-716, gnl|bosTau2|chr29 (1881392-1881548) |
|
560-716, gnl|Hg17|chr11 (87682134-87681978) |
|
560-716, gnl|Mm7|chr7 (84236509-84236662) |
| |
|
962-1846, gnl|bosTau2|chr29 (1894282-1895208) |
|
962-1846, gnl|Hg17|chr11 (87667326-87666425) |
|
962-1846, gnl|Mm7|chr7 (84246462-84247359) |
|
cbl (1.72196) |
|
mga (1.60205) |
|
kid (1.16762) |
|
rec (1.03842) |
|
sug (0.891039) |
|
nje (0.8296) |
|
fat (0.737137) |
|
cov (0.660764) |
|
ova (0.645661) |
|
hea (0.613497) |
|
sag (0.548145) |
|
thg (0.507164) |
|
tra (0.492368) |
|
med (0.465008) |
|
ski (0.440205) |
|
liv (0.438853) |
|
lin (0.436808) |
|
spl (0.429553) |
|
lnt (0.426925) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
mgm (0.360685) |
|
sto (0.359648) |
|
fty (0.351679) |
|
cki (0.330469) |
|
nco (0.323468) |
|
csp (0.322373) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
jej (0.296765) |
|
hlv (0.278513) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
fli (0.202881) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
cag (0.151194) |
|
lun (0.150489) |
|
isp (0.150376) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ebs (0.118301) |
|
cbl (1.72196) |
|
mga (1.60205) |
|
kid (1.16762) |
|
rec (1.03842) |
|
sug (0.891039) |
|
nje (0.8296) |
|
fat (0.737137) |
|
cov (0.660764) |
|
ova (0.645661) |
|
hea (0.613497) |
|
sag (0.548145) |
|
thg (0.507164) |
|
tra (0.492368) |
|
med (0.465008) |
|
ski (0.440205) |
|
liv (0.438853) |
|
lin (0.436808) |
|
spl (0.429553) |
|
lnt (0.426925) |
|
cmu (0.372787) |
|
cly (0.361925) |
|
mgm (0.360685) |
|
sto (0.359648) |
|
fty (0.351679) |
|
cki (0.330469) |
|
nco (0.323468) |
|
csp (0.322373) |
|
cty (0.31224) |
|
bfe (0.299715) |
|
jej (0.296765) |
|
hlv (0.278513) |
|
lyg (0.266205) |
|
ret (0.257467) |
|
pgl (0.236967) |
|
mgp (0.230681) |
|
spc (0.226732) |
|
fli (0.202881) |
|
nbm (0.198649) |
|
aor (0.195274) |
|
sin (0.174948) |
|
duo (0.172801) |
|
mcp (0.170648) |
|
cje (0.165235) |
|
cag (0.151194) |
|
lun (0.150489) |
|
isp (0.150376) |
|
pty (0.142714) |
|
csk (0.140746) |
|
cst (0.140036) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
ute (0.132784) |
|
ebs (0.118301) |
