Non-Coding RNA Search

Ss1.1-Pig4-TMW8024I08.5

Sequence:


               
               CTAAGGGGACCTACAGACAGACAGACATTTGAAAATTAATAGCTTTTGATTCATATAATT
TTTTGTAATTTGGATAATAAAAATTGTAGCTTTTTATTAAACCAGGAAACATGAAGCATA
ATTTGTTTAAAATTCTCTTTGGTCATTAAACGACCAAAAAAGGAAATAAAATCAAATATA
TGAGGGTTTTTTCCCCCCCTCCTTAGATTAAACTTTAAAACTGTATTTAAGGAATCAAAT
CTTGGAAAATCATGGAAGGTTTTAGTAATGATACTGATAATTTCAGGGAAATTAATGAAG
TACCTATTGATTTTAAAGTATATTTTATTCAGTAGTTTTGGTATCTTGCCATGGAGGATA
CTAGCCCAGCCTAGCAGAAAAGTGCAATATGTATAGCATACTTTGACATTTTAAAAGTTA
TAATTAATTCCTTAACCATTTTGAAATGCTGGGCAAATGTTTAAAAAAATGGTACATAAA
GTATTTGCATTTAATTCATTTAATCAGGCATTTTGAAAGCTGATTGGATAAAACACGGTA
ATATGGTTGAAAATTTGGTAACATTTTAATGTTATTTTTACTCTACTGTGAAAAGTTTTT
TATATGACATACACACCCTAGTTTATTTTTGTGTCTTAGTGTGGACTCACCAATTTATTA
CAGGTATCCTGAGCCAGGAACACAATCAGGTTTCATGCCACTTTTGATACTGGCTATTCT
TAATTCTCATATGAGTGTAGGACTTAAGACTAAATGTTTCGTCAGTGGGACTGTGCTGTC
TGTGGAACTTAATAAATTACGTGATCATTTTCTTCAGACTTGAAGGAGAGTGATAAATAA
AATTTGGAGTCATAGGATATTGATGTACAATTTAAGGATTAAATTTTTTTATAAATCAGT
TGTAAACAATGGATTATTAAATTAAATGTTGACTTGCTAGTATAAAACTGCAAGAATAAA
AGTAAATTCTCCAGCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGGGGACCTACAGACAGACAGACATTTGAAAATTAATAGCTTTTGATTCATATAATT
TTTTGTAATTTGGATAATAAAAATTGTAGCTTTTTATTAAACCAGGAAACATGAAGCATA
ATTTGTTTAAAATTCTCTTTGGTCATTAAACGACCAAAAAAGGAAATAAAATCAAATATA
TGAGGGTTTTTTCCCCCCCTCCTTAGATTAAACTTTAAAACTGTATTTAAGGAATCAAAT
CTTGGAAAATCATGGAAGGTTTTAGTAATGATACTGATAATTTCAGGGAAATTAATGAAG
TACCTATTGATTTTAAAGTATATTTTATTCAGTAGTTTTGGTATCTTGCCATGGAGGATA
CTAGCCCAGCCTAGCAGAAAAGTGCAATATGTATAGCATACTTTGACATTTTAAAAGTTA
TAATTAATTCCTTAACCATTTTGAAATGCTGGGCAAATGTTTAAAAAAATGGTACATAAA
GTATTTGCATTTAATTCATTTAATCAGGCATTTTGAAAGCTGATTGGATAAAACACGGTA
ATATGGTTGAAAATTTGGTAACATTTTAATGTTATTTTTACTCTACTGTGAAAAGTTTTT
TATATGACATACACACCCTAGTTTATTTTTGTGTCTTAGTGTGGACTCACCAATTTATTA
CAGGTATCCTGAGCCAGGAACACAATCAGGTTTCATGCCACTTTTGATACTGGCTATTCT
TAATTCTCATATGAGTGTAGGACTTAAGACTAAATGTTTCGTCAGTGGGACTGTGCTGTC
TGTGGAACTTAATAAATTACGTGATCATTTTCTTCAGACTTGAAGGAGAGTGATAAATAA
AATTTGGAGTCATAGGATATTGATGTACAATTTAAGGATTAAATTTTTTTATAAATCAGT
TGTAAACAATGGATTATTAAATTAAATGTTGACTTGCTAGTATAAAACTGCAAGAATAAA
AGTAAATTCTCCAGCTAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               343-536, - strand, RNAz p=0.836275

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-536, - strand, RNAz p=0.836275

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr7 (27764498-27763550)
               

               
               1-984, gnl|Hg17|chr6 (100097938-100096987)
               

               
               1-984, gnl|Mm7|chr4 (21752056-21752991)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr7 (27764498-27763550)
               

               
               1-984, gnl|Hg17|chr6 (100097938-100096987)
               

               
               1-984, gnl|Mm7|chr4 (21752056-21752991)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               mgp (0.461361)
               

               
               lin (0.291206)
               

               
               pla (0.267344)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               sug (0.127291)

	1-984, gnl\|bosTau2\|chr7 (27764498-27763550)
	1-984, gnl\|Hg17\|chr6 (100097938-100096987)
	1-984, gnl\|Mm7\|chr4 (21752056-21752991)

	eye (0.511509)
	mgp (0.461361)
	lin (0.291206)
	pla (0.267344)
	lyg (0.266205)
	ret (0.257467)
	thg (0.253582)
	ece (0.229305)
	rec (0.17307)
	fco (0.157208)
	lun (0.150489)
	bfe (0.149858)
	fat (0.147427)
	kid (0.129735)
	ova (0.129132)
	sug (0.127291)