Non-Coding RNA Search

Ss1.1-Pig4-TMW8024I14.3

Sequence:


               
               GCTCTGAACGCCCGGGCTGGACGGCTCGACGTCATGACCCAGAACCCTTACAATGCCGTC
GTCCACCTCGGACACAGCAACGGGACTGTGTCTTTATGGAGCCCTGCAGTGAAGGAACCG
CTGGCAAAGATTCTGTGTCACCGCGGTGGGGTGCGGGCCGTGGCAGTCGATCCTACAGGC
ACGCACATGGCTACCTCTGGCCTGGACCACCAGCTGAAGATCTTTGACTTGCGGGGAACG
TTCCAGCCCCTGAGTGCACGGACCCTGCCCCAGGGGGCGGGGCATCTGGCCTTCTCCCAG
CGTGGGCTGCTGGCTGCAGGACTGGGCGATGTGGTCAACGTGTGGGCAGGGCCGGGTGGG
GCCGGTGCCCCCTGCCTGGAGCGGCCCTACCTCACCCACCGGCTCACTGGCCACGTGCAC
GGCCTGCAGTTCTGCCCCTTTGAGGATGTGCTCGGGGTGGGACACAGCGGGGGCGTCACC
AGCATGCTGGTCCCTGGGGCTGCTGAGCCCAACTTTGATGGGCTGGAGAGTAATCCTTAC
CGGAGCCGCAAGCAGCGCCAGGAGTGGGAGGTGAAGGCCCTGCTGGAGAAGGTGCCAGCA
GAGCTCATCTGCCTGGACCCCCGAGCCCTCGCAGAGGTAGATGTGGTCTCCTTGGAGCAG
GAGAAGAAGGAACGGATCGAGAGGCTGGGCTATGATCCCGAGGCCAAGGCTCCCTTCCAG
CCAAAGCCAAAGCAGAAGGGCCGCAGCTCCACAGCAAGTCTAGTGAAGAGGAAGAAGAAG
GTCATGGATGAAGAACACAGGGACAAAGTCCGGCAGAGCCTTAAACAGCAGCAGCAGCAG
AAGCAAGAGAAGGCCAAGCCCACAGGGGCCCGGCCATCTGCCCTGGACCGATTTGTGCGC
TGAGCCCCGCTCCAAGGTGGCCTGAGAACAATGTTCTCCCACCAGTGGGGAATGACCTGT
TCCCTGGAACGCGCAGAGAGCATTGAGCCCTTCCCCATTGGGCCGGGGGTTGGAGGGGTG
AGGGGGGTGGCCAGCTGGCTCTGGGTGGATGGGTATTAAAGAGGAAGGAGGGCGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGAACGCCCGGGCTGGACGGCTCGACGTCATGACCCAGAACCCTTACAATGCCGTC
GTCCACCTCGGACACAGCAACGGGACTGTGTCTTTATGGAGCCCTGCAGTGAAGGAACCG
CTGGCAAAGATTCTGTGTCACCGCGGTGGGGTGCGGGCCGTGGCAGTCGATCCTACAGGC
ACGCACATGGCTACCTCTGGCCTGGACCACCAGCTGAAGATCTTTGACTTGCGGGGAACG
TTCCAGCCCCTGAGTGCACGGACCCTGCCCCAGGGGGCGGGGCATCTGGCCTTCTCCCAG
CGTGGGCTGCTGGCTGCAGGACTGGGCGATGTGGTCAACGTGTGGGCAGGGCCGGGTGGG
GCCGGTGCCCCCTGCCTGGAGCGGCCCTACCTCACCCACCGGCTCACTGGCCACGTGCAC
GGCCTGCAGTTCTGCCCCTTTGAGGATGTGCTCGGGGTGGGACACAGCGGGGGCGTCACC
AGCATGCTGGTCCCTGGGGCTGCTGAGCCCAACTTTGATGGGCTGGAGAGTAATCCTTAC
CGGAGCCGCAAGCAGCGCCAGGAGTGGGAGGTGAAGGCCCTGCTGGAGAAGGTGCCAGCA
GAGCTCATCTGCCTGGACCCCCGAGCCCTCGCAGAGGTAGATGTGGTCTCCTTGGAGCAG
GAGAAGAAGGAACGGATCGAGAGGCTGGGCTATGATCCCGAGGCCAAGGCTCCCTTCCAG
CCAAAGCCAAAGCAGAAGGGCCGCAGCTCCACAGCAAGTCTAGTGAAGAGGAAGAAGAAG
GTCATGGATGAAGAACACAGGGACAAAGTCCGGCAGAGCCTTAAACAGCAGCAGCAGCAG
AAGCAAGAGAAGGCCAAGCCCACAGGGGCCCGGCCATCTGCCCTGGACCGATTTGTGCGC
TGAGCCCCGCTCCAAGGTGGCCTGAGAACAATGTTCTCCCACCAGTGGGGAATGACCTGT
TCCCTGGAACGCGCAGAGAGCATTGAGCCCTTCCCCATTGGGCCGGGGGTTGGAGGGGTG
AGGGGGGTGGCCAGCTGGCTCTGGGTGGATGGGTATTAAAGAGGAAGGAGGGCGGCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q96KL3_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q96KL3_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               801-938, - strand, RNAz p=0.836255

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               801-938, - strand, RNAz p=0.836255

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               180-497, gnl|bosTau2|chr23 (5818459-5818142)
               

               
               180-497, gnl|Hg17|chr6 (33356745-33356428)
               

               
               180-497, gnl|Mm7|chr17 (32026247-32026564)
               


               
               801-1030, gnl|bosTau2|chr23 (5817325-5817090)
               

               
               801-1030, gnl|Hg17|chr6 (33355130-33354894)
               

               
               801-1030, gnl|Mm7|chr17 (32027307-32027703)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-497, gnl|bosTau2|chr23 (5818459-5818142)
               

               
               180-497, gnl|Hg17|chr6 (33356745-33356428)
               

               
               180-497, gnl|Mm7|chr17 (32026247-32026564)
               


               
               801-1030, gnl|bosTau2|chr23 (5817325-5817090)
               

               
               801-1030, gnl|Hg17|chr6 (33355130-33354894)
               

               
               801-1030, gnl|Mm7|chr17 (32027307-32027703)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ill (0.351185)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.351185)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               jej (0.0989218)

	180-497, gnl\|bosTau2\|chr23 (5818459-5818142)
	180-497, gnl\|Hg17\|chr6 (33356745-33356428)
	180-497, gnl\|Mm7\|chr17 (32026247-32026564)

	801-1030, gnl\|bosTau2\|chr23 (5817325-5817090)
	801-1030, gnl\|Hg17\|chr6 (33355130-33354894)
	801-1030, gnl\|Mm7\|chr17 (32027307-32027703)

	ill (0.351185)
	fcc (0.197785)
	nco (0.161734)
	cag (0.151194)
	ste (0.135208)
	pla (0.133672)
	jej (0.0989218)