Non-Coding RNA Search

Ss1.1-Pig4-TMW8024J04.3

Sequence:


               
               CCAACTTGGACAGTTCAAAAAAACCCAGATCTTGGTGGGGGTTAATAAAGATGAAGGAAC
GGCATTTTTAGTATATGGTGCTCCTGGCTTCAGCAAAGATAACAACAGTATTATAACTAG
AAAAGAATTTGAAGAAGGTTTGAAAATATTTTTTCCAGGAGTGAGTGAATTTGGAAAGGA
ATCGATCCTTTTCCACTACATGGACTGGACAGATGATCAGAGGGCTGAAAATTACCGTGA
TGCTTTGGATGATGTTGTTGGGGATTATGATATCATATGCCCAGCCTTGGAGTTCACTAA
AAAGTTCTCAGAAATGGGAAATAATGCCTTTTTCTACTATTTTGAACACCGATCCTCCAA
ACTCCCTTGGCCAGAATGGATGGGAGTGATGCATGGTTATGAGATTGAATTTGTCTTCGG
TTTACCTCTGGAAAGAAGAGCTAATTACACAAAAGCTGAGGAAATTTTGAGTAGATCCAT
TATGAAACGCTGGGCAAACTTTGCAAAATATGGAAATCCAAATGGGACCCAGAACAATAG
TACAAGATGGCCGGTCTTCAAAAGCAATGAACAAAAATATTTAACCTTGAATGCTGAGTC
ACCACGAGTATACACTAAACTACGTGCCCAGCAATGCCGATTCTGGACATTATTTTTTCC
TAAAGTCTTGGAAATGACAGGAAATATTGATGAAGCAGAACGAGAATGGAAAGCAGGATT
CCATCGCTGGAACAATTACATGATGGATTGGAAAAATCAATTTAACGATTACACTAGCAA
GAAAGAAAGCTGCGCAGATCTCTAATTAATAGATTTACCCTTTATAGAACTTCATTTTCC
TGTAGATCAAGGCAAAAATATCAGTGGCTCTCTTACACACCTGGTAGGAAAGCTATTATA
TAGTTGAAACAAAAATGCCAGAAGGATAATATTGATTCCTCACATCTTTCACTATTATAC
CTAGCATTTCAAAAACCAAACGGCTAGAACAAGTTTAATTAAATTTCACATTATAAAGTT
TGACAATTAATTATATGCATATTAAAACAATTTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAACTTGGACAGTTCAAAAAAACCCAGATCTTGGTGGGGGTTAATAAAGATGAAGGAAC
GGCATTTTTAGTATATGGTGCTCCTGGCTTCAGCAAAGATAACAACAGTATTATAACTAG
AAAAGAATTTGAAGAAGGTTTGAAAATATTTTTTCCAGGAGTGAGTGAATTTGGAAAGGA
ATCGATCCTTTTCCACTACATGGACTGGACAGATGATCAGAGGGCTGAAAATTACCGTGA
TGCTTTGGATGATGTTGTTGGGGATTATGATATCATATGCCCAGCCTTGGAGTTCACTAA
AAAGTTCTCAGAAATGGGAAATAATGCCTTTTTCTACTATTTTGAACACCGATCCTCCAA
ACTCCCTTGGCCAGAATGGATGGGAGTGATGCATGGTTATGAGATTGAATTTGTCTTCGG
TTTACCTCTGGAAAGAAGAGCTAATTACACAAAAGCTGAGGAAATTTTGAGTAGATCCAT
TATGAAACGCTGGGCAAACTTTGCAAAATATGGAAATCCAAATGGGACCCAGAACAATAG
TACAAGATGGCCGGTCTTCAAAAGCAATGAACAAAAATATTTAACCTTGAATGCTGAGTC
ACCACGAGTATACACTAAACTACGTGCCCAGCAATGCCGATTCTGGACATTATTTTTTCC
TAAAGTCTTGGAAATGACAGGAAATATTGATGAAGCAGAACGAGAATGGAAAGCAGGATT
CCATCGCTGGAACAATTACATGATGGATTGGAAAAATCAATTTAACGATTACACTAGCAA
GAAAGAAAGCTGCGCAGATCTCTAATTAATAGATTTACCCTTTATAGAACTTCATTTTCC
TGTAGATCAAGGCAAAAATATCAGTGGCTCTCTTACACACCTGGTAGGAAAGCTATTATA
TAGTTGAAACAAAAATGCCAGAAGGATAATATTGATTCCTCACATCTTTCACTATTATAC
CTAGCATTTCAAAAACCAAACGGCTAGAACAAGTTTAATTAAATTTCACATTATAAAGTT
TGACAATTAATTATATGCATATTAAAACAATTTGCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               513-681, gnl|bosTau2|chr21 (11581926-11581758)
               

               
               513-681, gnl|Hg17|chr3 (166986802-166986634)
               

               
               513-681, gnl|Mm7|chr3 (73752675-73752507)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               513-681, gnl|bosTau2|chr21 (11581926-11581758)
               

               
               513-681, gnl|Hg17|chr3 (166986802-166986634)
               

               
               513-681, gnl|Mm7|chr3 (73752675-73752507)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               lyg (1.33103)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (1.33103)
               

               
               mgm (0.360685)
               

               
               vin (0.332557)
               

               
               sag (0.182715)
               

               
               sto (0.179824)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               mga (0.160205)
               

               
               fco (0.157208)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               tra (0.123092)

	513-681, gnl\|bosTau2\|chr21 (11581926-11581758)
	513-681, gnl\|Hg17\|chr3 (166986802-166986634)
	513-681, gnl\|Mm7\|chr3 (73752675-73752507)

	lyg (1.33103)
	mgm (0.360685)
	vin (0.332557)
	sag (0.182715)
	sto (0.179824)
	sin (0.174948)
	rec (0.17307)
	mga (0.160205)
	fco (0.157208)
	lin (0.145603)
	spl (0.143184)
	pty (0.142714)
	ret (0.128733)
	bla (0.124347)
	tra (0.123092)