Non-Coding RNA Search

Ss1.1-Pig4-TMW8024J07.3

Sequence:


               
               GCCCAGGACCTTTTAGGCTTGTCTTGGCCCCTTTGAAGATCAGGAAGTTGATAAATTGTG
AAGCTCGCTGTTGAAAGACGGTGGCTCGGGTGGGACAGTCGCCAGGGATGGCGGAGCGTG
AGAATGGAGCGGGTGTCCGGGCTGCTTTCCAGGACGCTGAACAGAGTCCTGTGGCTCTCC
GGCCTCTTTGAGCGCGGAGCTGCCCGGCAGCCCCGGATCATGGAAGAGAAAGCGCTAGAG
GTTTATGATTTGATTCGAACTATCCGGGACCCAGAGAAGCCCAATACTTTAGAAGAACTG
GAAGTGGTATCAGAAAGTTGTGTGGAGGTTCAGGAGATAAATGAAGAAGACTATCTGGTT
ATCATCAGGTTCACGCCAACAGTACCTCATTGCTCTTTGGCGACTCTTATTGGGCTGTGT
TTAAGGGTAAAACTTCAGCGGTGTTTACCATTTAAACATAAGTTGGAAATCTACATATCT
GAGGGAACCCACTCAACAGAGGAAGACATCAACAAGCAGATAAATGACAAAGAGCGAGTG
GCAGCTGCAATGGAGAACCCCAACTTAAGGGAAATCGTGGAACAGTGTGTCCTTGAACCT
GACTAATAGGTGTCTTAAGAGCCATTGAACTGCAGTCATTTGATATATTTGTTTAAACTC
TTTGTAAAATGTAAAAGTCTCATGTTTATTACATAGGTTATTTGTACCTCAGTATTTTTT
AAAAGGATGATTTCCAAGCAGGACTTAATTATAAGGTAGTACCTAGTTTGTTCAGTGTCT
AACATTCTCAGGATTTGTAACACTTAAATGATCAGACAGAAAATATTTTCTAGTTAATTA
TGTGTAAGATAAGTTGCTATTTTTCTGATGCCCATTCTGATACAACTGCTTTTCATGTCA
AATATTTACTGCCCATATGTATTCAATTTAAATCATTACTCTGTAAAATAAATAAAGATG
ATTCTTGTACATAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGGACCTTTTAGGCTTGTCTTGGCCCCTTTGAAGATCAGGAAGTTGATAAATTGTG
AAGCTCGCTGTTGAAAGACGGTGGCTCGGGTGGGACAGTCGCCAGGGATGGCGGAGCGTG
AGAATGGAGCGGGTGTCCGGGCTGCTTTCCAGGACGCTGAACAGAGTCCTGTGGCTCTCC
GGCCTCTTTGAGCGCGGAGCTGCCCGGCAGCCCCGGATCATGGAAGAGAAAGCGCTAGAG
GTTTATGATTTGATTCGAACTATCCGGGACCCAGAGAAGCCCAATACTTTAGAAGAACTG
GAAGTGGTATCAGAAAGTTGTGTGGAGGTTCAGGAGATAAATGAAGAAGACTATCTGGTT
ATCATCAGGTTCACGCCAACAGTACCTCATTGCTCTTTGGCGACTCTTATTGGGCTGTGT
TTAAGGGTAAAACTTCAGCGGTGTTTACCATTTAAACATAAGTTGGAAATCTACATATCT
GAGGGAACCCACTCAACAGAGGAAGACATCAACAAGCAGATAAATGACAAAGAGCGAGTG
GCAGCTGCAATGGAGAACCCCAACTTAAGGGAAATCGTGGAACAGTGTGTCCTTGAACCT
GACTAATAGGTGTCTTAAGAGCCATTGAACTGCAGTCATTTGATATATTTGTTTAAACTC
TTTGTAAAATGTAAAAGTCTCATGTTTATTACATAGGTTATTTGTACCTCAGTATTTTTT
AAAAGGATGATTTCCAAGCAGGACTTAATTATAAGGTAGTACCTAGTTTGTTCAGTGTCT
AACATTCTCAGGATTTGTAACACTTAAATGATCAGACAGAAAATATTTTCTAGTTAATTA
TGTGTAAGATAAGTTGCTATTTTTCTGATGCCCATTCTGATACAACTGCTTTTCATGTCA
AATATTTACTGCCCATATGTATTCAATTTAAATCATTACTCTGTAAAATAAATAAAGATG
ATTCTTGTACATAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               U195_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               U195_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-247, + strand, RNAz p=0.562701

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-247, + strand, RNAz p=0.562701

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_032231, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032231, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-247, gnl|bosTau2|chr10 (30092671-30092427)
               

               
               2-247, gnl|Hg17|chr15 (62173137-62172897)
               

               
               2-247, gnl|Mm7|chr9 (66156370-66156611)
               


               
               509-971, gnl|bosTau2|chr10 (30077629-30077173)
               

               
               509-971, gnl|Hg17|chr15 (62152280-62151813)
               

               
               509-971, gnl|Mm7|chr9 (66167978-66168603)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-247, gnl|bosTau2|chr10 (30092671-30092427)
               

               
               2-247, gnl|Hg17|chr15 (62173137-62172897)
               

               
               2-247, gnl|Mm7|chr9 (66156370-66156611)
               


               
               509-971, gnl|bosTau2|chr10 (30077629-30077173)
               

               
               509-971, gnl|Hg17|chr15 (62152280-62151813)
               

               
               509-971, gnl|Mm7|chr9 (66167978-66168603)

Expressed library(ies): 42 entry(ies)

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Expressed library(ies): 42 entry(ies)

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               cbe (1.67464)
               

               
               che (0.817884)
               

               
               lin (0.728014)
               

               
               sin (0.69979)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               pan (0.471921)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               csk (0.422238)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (1.67464)
               

               
               che (0.817884)
               

               
               lin (0.728014)
               

               
               sin (0.69979)
               

               
               sug (0.509165)
               

               
               cki (0.495704)
               

               
               pan (0.471921)
               

               
               fco (0.471624)
               

               
               mgp (0.461361)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               csk (0.422238)
               

               
               thg (0.380373)
               

               
               rec (0.346141)
               

               
               vin (0.332557)
               

               
               spl (0.286369)
               

               
               ssp (0.271039)
               

               
               lyg (0.266205)
               

               
               kid (0.259471)
               

               
               eep (0.245128)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               ldo (0.194005)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	2-247, gnl\|bosTau2\|chr10 (30092671-30092427)
	2-247, gnl\|Hg17\|chr15 (62173137-62172897)
	2-247, gnl\|Mm7\|chr9 (66156370-66156611)

	509-971, gnl\|bosTau2\|chr10 (30077629-30077173)
	509-971, gnl\|Hg17\|chr15 (62152280-62151813)
	509-971, gnl\|Mm7\|chr9 (66167978-66168603)

	cbe (1.67464)
	che (0.817884)
	lin (0.728014)
	sin (0.69979)
	sug (0.509165)
	cki (0.495704)
	pan (0.471921)
	fco (0.471624)
	mgp (0.461361)
	spc (0.453463)
	fat (0.442282)
	csk (0.422238)
	thg (0.380373)
	rec (0.346141)
	vin (0.332557)
	spl (0.286369)
	ssp (0.271039)
	lyg (0.266205)
	kid (0.259471)
	eep (0.245128)
	hea (0.204499)
	col (0.195008)
	ldo (0.194005)
	cmu (0.186393)
	sto (0.179824)
	cut (0.169924)
	nco (0.161734)
	mga (0.160205)
	tbr (0.154178)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	lnt (0.142308)
	cst (0.140036)
	ste (0.135208)
	nmm (0.132802)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	ecc (0.115035)
	jej (0.0989218)