Non-Coding RNA Search

Ss1.1-Pig4-TMW8024J12.3

Sequence:


               
               AGACTGCGCCACAATCCGGAAATGGCTTACGAAGTGTGCAGACGACTCTGAAACAGCCAA
CTACATTAGTGCTCACACTAAAGATTGTCCCAAGTGCAACATCTGCATTGAGAAGAACGG
AGGCTGCAATCACATGCAATGCTCCAAGTGTAAACATGACTTCTGCTGGATGTGTCTAGG
AGATTGGAAGACCCATGGCAGCGAGTACTATGAGTGCAGTCGGTACAAGGAGAACCCAGA
CATTGTCAATCAGAGCCAGCAAGCCCAGGCCAGGGAGGCCCTCAAGAAGTACTTGTTCTA
CTTTGAGAGGTGGGAAAACCACAACAAGAGTTTGCAGCTGGAGGCACAGACATACCAGCG
GATTCATGAGAAGATTCAGGAGAGGGTCATGAATAATCTGGGGACATGGATTGACTGGCA
GTATCTACAGAACGCTGCCAAGCTCTTGGCCAAGTGTCGATACACCCTGCAGTACACGTA
CCCATATGCATACTACATGGAGTCTGGACCCAGGAAAAAGCTGTTTGAATACCAGCAGGC
TCAACTGGAGGCTGAGATCGAAAACCTGTCATGGAAGGTGGAGCGTGCGGACAGCTATGA
CAGAGGGGACTTAGAAAACCAGATGCACATAGCAGAGCAGCGGAGGAGAACCCTGCTGAA
GGATTTCCATGACACCTAGATTGGAACGTGGACATGCCGGAGTGAAGAAGATGTGGCTGC
GAGGTCTCCCGGCTGCCATACTGCATGCTGCAGGCTCTGCCTTTCACGATCCCAGGCAAC
AGCCAGGGCCCCACTCCTGAGAGACACTGGCCCCACACTTCTTAGTCAATTTTCGTTTTT
TTCTCATCTTTTTTGCTTTTTGTTTTTACCAGGGTAGAGGCCATGTTGAATTGGCCTCTT
TTCAGGACCTTTAATTCCCCCTGGATGGTTGTTGGGAGGGTGGGAAAGTTTTTTTCTGAA
TGACTATTAATAGTATTAGATCATTACAACTTATGTAATTTTCAAAAGTTGCACAATTAT
ATAAAAAAAAAGGGGGACAAACCAACCATAGAATTACACAGAACCCTTTTTAAAAATAAA
TTGGCATTGGAGTGTTTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACTGCGCCACAATCCGGAAATGGCTTACGAAGTGTGCAGACGACTCTGAAACAGCCAA
CTACATTAGTGCTCACACTAAAGATTGTCCCAAGTGCAACATCTGCATTGAGAAGAACGG
AGGCTGCAATCACATGCAATGCTCCAAGTGTAAACATGACTTCTGCTGGATGTGTCTAGG
AGATTGGAAGACCCATGGCAGCGAGTACTATGAGTGCAGTCGGTACAAGGAGAACCCAGA
CATTGTCAATCAGAGCCAGCAAGCCCAGGCCAGGGAGGCCCTCAAGAAGTACTTGTTCTA
CTTTGAGAGGTGGGAAAACCACAACAAGAGTTTGCAGCTGGAGGCACAGACATACCAGCG
GATTCATGAGAAGATTCAGGAGAGGGTCATGAATAATCTGGGGACATGGATTGACTGGCA
GTATCTACAGAACGCTGCCAAGCTCTTGGCCAAGTGTCGATACACCCTGCAGTACACGTA
CCCATATGCATACTACATGGAGTCTGGACCCAGGAAAAAGCTGTTTGAATACCAGCAGGC
TCAACTGGAGGCTGAGATCGAAAACCTGTCATGGAAGGTGGAGCGTGCGGACAGCTATGA
CAGAGGGGACTTAGAAAACCAGATGCACATAGCAGAGCAGCGGAGGAGAACCCTGCTGAA
GGATTTCCATGACACCTAGATTGGAACGTGGACATGCCGGAGTGAAGAAGATGTGGCTGC
GAGGTCTCCCGGCTGCCATACTGCATGCTGCAGGCTCTGCCTTTCACGATCCCAGGCAAC
AGCCAGGGCCCCACTCCTGAGAGACACTGGCCCCACACTTCTTAGTCAATTTTCGTTTTT
TTCTCATCTTTTTTGCTTTTTGTTTTTACCAGGGTAGAGGCCATGTTGAATTGGCCTCTT
TTCAGGACCTTTAATTCCCCCTGGATGGTTGTTGGGAGGGTGGGAAAGTTTTTTTCTGAA
TGACTATTAATAGTATTAGATCATTACAACTTATGTAATTTTCAAAAGTTGCACAATTAT
ATAAAAAAAAAGGGGGACAAACCAACCATAGAATTACACAGAACCCTTTTTAAAAATAAA
TTGGCATTGGAGTGTTTTACCCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62087294|dbj|BAD92094.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62087294|dbj|BAD92094.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               858-985, + strand, RNAz p=0.999234

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               858-985, + strand, RNAz p=0.999234

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-309, gnl|bosTau2|chr16 (16216410-16216725)
               

               
               1-309, gnl|Hg17|chr18 (24486497-24486837)
               

               
               1-309, gnl|Mm7|chr11 (59556507-59556167)
               


               
               341-985, gnl|bosTau2|chr16 (16216725-16217335)
               

               
               341-985, gnl|Hg17|chr18 (24486837-24487469)
               

               
               341-985, gnl|Mm7|chr11 (59556167-59555532)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-309, gnl|bosTau2|chr16 (16216410-16216725)
               

               
               1-309, gnl|Hg17|chr18 (24486497-24486837)
               

               
               1-309, gnl|Mm7|chr11 (59556507-59556167)
               


               
               341-985, gnl|bosTau2|chr16 (16216725-16217335)
               

               
               341-985, gnl|Hg17|chr18 (24486837-24487469)
               

               
               341-985, gnl|Mm7|chr11 (59556167-59555532)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               sme (0.610874)
               

               
               hlv (0.278513)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               hlv (0.278513)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	1-309, gnl\|bosTau2\|chr16 (16216410-16216725)
	1-309, gnl\|Hg17\|chr18 (24486497-24486837)
	1-309, gnl\|Mm7\|chr11 (59556507-59556167)

	341-985, gnl\|bosTau2\|chr16 (16216725-16217335)
	341-985, gnl\|Hg17\|chr18 (24486837-24487469)
	341-985, gnl\|Mm7\|chr11 (59556167-59555532)

	sme (0.610874)
	hlv (0.278513)
	jca (0.22792)
	fcc (0.197785)
	fty (0.17584)
	csp (0.161186)
	spl (0.143184)
	hyp (0.142837)
	cov (0.132153)
	cly (0.120642)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)