Non-Coding RNA Search

Ss1.1-Pig4-TMW8024J18.5

Sequence:


               
               GTGTGATGGTGCCGGGAGGAAGGAAGCGCCGTGACAGCGCCTTGGTCGGAGCCGGGGTTC
CGGGGTTGAGGAGGCCCGGGAACGGAGGATCTGCCGAGCTGGCCGCTGGCTGGGCGAGCG
GTCACAATAGGAGGCGGCGGCCCAGCGAGGAACCGCGGGAGTAGCCCCGCAGGGCGGAGC
CTCTCCTCGCAGAGTGAAGATAGTCCAAGTCCCAAGAGACAGCGCCTCTCTCATTCAGTC
TTTGATTATACATCAGCATCACCAGCTCCCTCACCACCAATGCGACCATGGGAGATGACA
TCAAATAGGCAGCCCCCTTCAGTTCGACCAAGCCAACATCACTTCTCAGGGGAACGATGC
AACACACCTGCACGCAACAGAAGAAGTCCTCCTGTCAGGCGCCAGAGAGGAAGAAGGGAT
CGTCTGTCTCGACATAATTCCATTAGTCAAGATGAAAACTATCACCATCTCCCTTATGCA
CAACAGCAAGCAATAGAGGAACCTCGAGCCTTCCACCCTCCGAATGTATCTCCCCGTCTG
TTACACCCTGCTGCTCATCCACCCCAGCAGAATGCAGTAATGGTTGACATACATGATCAG
CTCCATCAGGGCACTGTTCCTGTTTCTTACACAGTAACAACAGTGGCACCACATGGGATT
CCACTCTGCACAGGCCAGCACATCCCTGCTTGCAGTACACAACAGGTCCCAGGATGCTCT
GTGGTTTTCAGTGGCCAGCACCTCCCTGTCTGTAGTGTGCCTCCTCCCATGCTTCAAGCA
TGCTCAGTTCAGCACTTGCCAGTACCGTATGCTGCATTCCCACCCCTTATTTCTAGCGAT
CCATTTCTTTTACATCCTCCTCACCTTTCTCCCCATCATCCTCCTCATTTGCCACCTCCA
GGCCAGTTTGTCCCTTTCCAAACACAGCAGTCACGATCGCCTCTGCAAAGAATAGAAAAT
GAAGTGGAACTCTTAGGAGAACATCTTCCTGTAGGAGGTTTTACTTACCCTCCATCAGCC
CATCCCCCAACATTACCTCCATCAGCTCCTTTGCAGTTCTTAACACATGATCCTTTGCAT
CAGGAGGTTTCCTTTGGAGTACCTTATCCTCCATTTATGCCTCGAAGACTCACAGGACGT
AGTAGATATCGATCCCAGCAGCCAATACCACCTCCTCCTTATCATCCCAGCTTACTACCT
TATGTGTTATCAATGCTCCCAGTGCCACCTGCAGTGGGCCCAACTTTCAGCTTTGAATTG
GATGTAGAAGATGGAGAAGTAGAGAATTACGAGGCCCTGTTAAACCTAGCAGAGCGACTG
GGAGAGGCCAAGCCTCGAGGACTAACTAAAGCAGATATTGAACAACTTCCTTCTTACAGG
TTCAATCCTAACAACCACCAGTCAGAACAGACTTTGTGTGTAGTATGCATGTGTGATTTT
GAGTCAAGGCAGCTACTTAGAGTTTTACCCTGTAACCACGAGTTCCATGCCAAGTGTGTC
GACAAATGGCTTAAGGCAAATCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTGATGGTGCCGGGAGGAAGGAAGCGCCGTGACAGCGCCTTGGTCGGAGCCGGGGTTC
CGGGGTTGAGGAGGCCCGGGAACGGAGGATCTGCCGAGCTGGCCGCTGGCTGGGCGAGCG
GTCACAATAGGAGGCGGCGGCCCAGCGAGGAACCGCGGGAGTAGCCCCGCAGGGCGGAGC
CTCTCCTCGCAGAGTGAAGATAGTCCAAGTCCCAAGAGACAGCGCCTCTCTCATTCAGTC
TTTGATTATACATCAGCATCACCAGCTCCCTCACCACCAATGCGACCATGGGAGATGACA
TCAAATAGGCAGCCCCCTTCAGTTCGACCAAGCCAACATCACTTCTCAGGGGAACGATGC
AACACACCTGCACGCAACAGAAGAAGTCCTCCTGTCAGGCGCCAGAGAGGAAGAAGGGAT
CGTCTGTCTCGACATAATTCCATTAGTCAAGATGAAAACTATCACCATCTCCCTTATGCA
CAACAGCAAGCAATAGAGGAACCTCGAGCCTTCCACCCTCCGAATGTATCTCCCCGTCTG
TTACACCCTGCTGCTCATCCACCCCAGCAGAATGCAGTAATGGTTGACATACATGATCAG
CTCCATCAGGGCACTGTTCCTGTTTCTTACACAGTAACAACAGTGGCACCACATGGGATT
CCACTCTGCACAGGCCAGCACATCCCTGCTTGCAGTACACAACAGGTCCCAGGATGCTCT
GTGGTTTTCAGTGGCCAGCACCTCCCTGTCTGTAGTGTGCCTCCTCCCATGCTTCAAGCA
TGCTCAGTTCAGCACTTGCCAGTACCGTATGCTGCATTCCCACCCCTTATTTCTAGCGAT
CCATTTCTTTTACATCCTCCTCACCTTTCTCCCCATCATCCTCCTCATTTGCCACCTCCA
GGCCAGTTTGTCCCTTTCCAAACACAGCAGTCACGATCGCCTCTGCAAAGAATAGAAAAT
GAAGTGGAACTCTTAGGAGAACATCTTCCTGTAGGAGGTTTTACTTACCCTCCATCAGCC
CATCCCCCAACATTACCTCCATCAGCTCCTTTGCAGTTCTTAACACATGATCCTTTGCAT
CAGGAGGTTTCCTTTGGAGTACCTTATCCTCCATTTATGCCTCGAAGACTCACAGGACGT
AGTAGATATCGATCCCAGCAGCCAATACCACCTCCTCCTTATCATCCCAGCTTACTACCT
TATGTGTTATCAATGCTCCCAGTGCCACCTGCAGTGGGCCCAACTTTCAGCTTTGAATTG
GATGTAGAAGATGGAGAAGTAGAGAATTACGAGGCCCTGTTAAACCTAGCAGAGCGACTG
GGAGAGGCCAAGCCTCGAGGACTAACTAAAGCAGATATTGAACAACTTCCTTCTTACAGG
TTCAATCCTAACAACCACCAGTCAGAACAGACTTTGTGTGTAGTATGCATGTGTGATTTT
GAGTCAAGGCAGCTACTTAGAGTTTTACCCTGTAACCACGAGTTCCATGCCAAGTGTGTC
GACAAATGGCTTAAGGCAAATCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7LB33_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7LB33_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               357-475, - strand, RNAz p=0.557339

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               357-475, - strand, RNAz p=0.557339

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               175-1522, gnl|bosTau2|chr14 (5052309-5053654)
               

               
               175-1522, gnl|Hg17|chr9 (36366131-36329805)
               

               
               175-1522, gnl|Mm7|chr4 (44166374-44143464)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-1522, gnl|bosTau2|chr14 (5052309-5053654)
               

               
               175-1522, gnl|Hg17|chr9 (36366131-36329805)
               

               
               175-1522, gnl|Mm7|chr4 (44166374-44143464)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.415628)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)

	175-1522, gnl\|bosTau2\|chr14 (5052309-5053654)
	175-1522, gnl\|Hg17\|chr9 (36366131-36329805)
	175-1522, gnl\|Mm7\|chr4 (44166374-44143464)