Non-Coding RNA Search

Ss1.1-Pig4-TMW8024J20.3

Sequence:


               
               GAGGCCGGGCTACGCGGTGCCCTGCGCGTGAGCAGCTGCGGCGGCGGCGGCAGCATCCAG
CGGCCGTGCCAGCAGTACCAGCCCGTCGCTTTACTTTTTAGCTGCACGAACACAGTCATT
ATGCCGAAAAGACAGCTGCGGCGGCGGCGGCAGCATCCAGCGGCCGTGCCAGCAGTACCA
GCCCGTCGCTTTACTTTTTAGCTGCACGAACACAGTCATTATGCCGAAAAGAAAGTCTCC
GGAGAATACAGAGGGAAAGGATGGTTCCAAAGTAACTAAACAGGAGCCCACCAGACGGTC
TGCCAGGTTGTCAGCGAAACCTGCTCCACCAAAACCTGAACCTAAACCAAGAAAAACATC
TGCTAAGAAAGAACCTGGAACAAAGATGAACAAAGGTGCTAAAGGGAAGAAGGAGGAAAA
GCACGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAATGGTGAAACTAAAGCTGAAGA
GGCACAGAAAACTGAATCTGTAGCTAACGAGGGCGAATGAATTGTCATGAAAATTGGGGT
TGATTTTATGTACCTCTTGGGACAACTTTTAAAAGCTATTTTTACCGAGGATTTTGTAAA
TGCTAATTTTTTTAGGACTCTACTAGTTGGCATACAAAAATATATAAGGATGGACATTTT
ACCTTCTCGTAGTCATGCTTTTTGGAAATTTCCATCATCCTGGAGTAAAATAAATATCAA
TTTCATATTGGAAGCTGTCTGTAAGATTGATTCAGCATTCCATGCACTTGCTTTAAAAAT
GTAGTCCTGTGCATACAGTGGTGTTTTTACTGTGCGTATTTGAATTTTTTCATGCAGTTT
TTCTAGAGCAATAATCAGTGGTGCTTTTGTACCTAGGTTTTATGTGATTTTAATGAAACA
TGGATAGTTGTGGCCACCTGCTGACTATTTGTGGTTTAAAATAAAAGGTTTTCTTGCCTG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCGGGCTACGCGGTGCCCTGCGCGTGAGCAGCTGCGGCGGCGGCGGCAGCATCCAG
CGGCCGTGCCAGCAGTACCAGCCCGTCGCTTTACTTTTTAGCTGCACGAACACAGTCATT
ATGCCGAAAAGACAGCTGCGGCGGCGGCGGCAGCATCCAGCGGCCGTGCCAGCAGTACCA
GCCCGTCGCTTTACTTTTTAGCTGCACGAACACAGTCATTATGCCGAAAAGAAAGTCTCC
GGAGAATACAGAGGGAAAGGATGGTTCCAAAGTAACTAAACAGGAGCCCACCAGACGGTC
TGCCAGGTTGTCAGCGAAACCTGCTCCACCAAAACCTGAACCTAAACCAAGAAAAACATC
TGCTAAGAAAGAACCTGGAACAAAGATGAACAAAGGTGCTAAAGGGAAGAAGGAGGAAAA
GCACGAAGCTGGAAAGGAAGGTACTGCACCATCTGAAAATGGTGAAACTAAAGCTGAAGA
GGCACAGAAAACTGAATCTGTAGCTAACGAGGGCGAATGAATTGTCATGAAAATTGGGGT
TGATTTTATGTACCTCTTGGGACAACTTTTAAAAGCTATTTTTACCGAGGATTTTGTAAA
TGCTAATTTTTTTAGGACTCTACTAGTTGGCATACAAAAATATATAAGGATGGACATTTT
ACCTTCTCGTAGTCATGCTTTTTGGAAATTTCCATCATCCTGGAGTAAAATAAATATCAA
TTTCATATTGGAAGCTGTCTGTAAGATTGATTCAGCATTCCATGCACTTGCTTTAAAAAT
GTAGTCCTGTGCATACAGTGGTGTTTTTACTGTGCGTATTTGAATTTTTTCATGCAGTTT
TTCTAGAGCAATAATCAGTGGTGCTTTTGTACCTAGGTTTTATGTGATTTTAATGAAACA
TGGATAGTTGTGGCCACCTGCTGACTATTTGTGGTTTAAAATAAAAGGTTTTCTTGCCTG
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5EI55_GECJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5EI55_GECJA

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               134-400, gnl|bosTau2|chr2 (86528452-86528175)
               

               
               134-400, gnl|Hg17|chr1 (149185036-149185304)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-400, gnl|bosTau2|chr2 (86528452-86528175)
               

               
               134-400, gnl|Hg17|chr1 (149185036-149185304)

Expressed library(ies): 67 entry(ies)

More info

Expressed library(ies): 67 entry(ies)

Help | Less info


               
               mgp (1.84544)
               

               
               isp (1.80451)
               

               
               ret (1.5448)
               

               
               bfe (1.49858)
               

               
               thg (1.26791)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               med (1.04627)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               ldo (0.679018)
               

               
               vin (0.665115)
               

               
               pgl (0.592417)
               

               
               liv (0.585137)
               

               
               lyg (0.532411)
               

               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               ecc (0.46014)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 67 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgp (1.84544)
               

               
               isp (1.80451)
               

               
               ret (1.5448)
               

               
               bfe (1.49858)
               

               
               thg (1.26791)
               

               
               cbe (1.19617)
               

               
               tbr (1.07925)
               

               
               med (1.04627)
               

               
               elu (0.770713)
               

               
               ese (0.759013)
               

               
               ldo (0.679018)
               

               
               vin (0.665115)
               

               
               pgl (0.592417)
               

               
               liv (0.585137)
               

               
               lyg (0.532411)
               

               
               tra (0.492368)
               

               
               fco (0.471624)
               

               
               ecc (0.46014)
               

               
               spc (0.453463)
               

               
               fat (0.442282)
               

               
               lin (0.436808)
               

               
               hea (0.408998)
               

               
               kid (0.389206)
               

               
               gul (0.355177)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spl (0.286369)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               eli (0.151814)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	134-400, gnl\|bosTau2\|chr2 (86528452-86528175)
	134-400, gnl\|Hg17\|chr1 (149185036-149185304)

	mgp (1.84544)
	isp (1.80451)
	ret (1.5448)
	bfe (1.49858)
	thg (1.26791)
	cbe (1.19617)
	tbr (1.07925)
	med (1.04627)
	elu (0.770713)
	ese (0.759013)
	ldo (0.679018)
	vin (0.665115)
	pgl (0.592417)
	liv (0.585137)
	lyg (0.532411)
	tra (0.492368)
	fco (0.471624)
	ecc (0.46014)
	spc (0.453463)
	fat (0.442282)
	lin (0.436808)
	hea (0.408998)
	kid (0.389206)
	gul (0.355177)
	cut (0.339847)
	cje (0.330469)
	sme (0.305437)
	cte (0.29274)
	spl (0.286369)
	csk (0.281492)
	che (0.272628)
	fce (0.271592)
	ste (0.270416)
	pla (0.267344)
	nmm (0.265604)
	ova (0.258264)
	sug (0.254582)
	ebs (0.236602)
	ece (0.229305)
	nms (0.213858)
	mas (0.210305)
	tes (0.207814)
	fli (0.202881)
	aor (0.195274)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	mcp (0.170648)
	cki (0.165235)
	eli (0.151814)
	lun (0.150489)
	ski (0.146735)
	hyp (0.142837)
	pty (0.142714)
	lnt (0.142308)
	hlv (0.139256)
	ssp (0.13552)
	bla (0.124347)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)