Non-Coding RNA Search

Ss1.1-Pig4-TMW8024K08.3

Sequence:


               
               AATTTTTCCTGCTAACCCAAAATGTTATTTGTAATCAAATGTGTAGTGATTACACTTGAA
TTGTGTATTTAGTGTGTATCTGATCCTCCAGTGTTACCCCCGGAGATGGGATTGATGTCT
CCATTGTATTTAAACCAAAATGAACTGATACTTGTTGGAATGTATGTGAACTAATTGCAA
CTATATTAGAGCATATTACTGTAGTGCTGAGTGAGCAGGGGCATTGCCTGCAAGGAGAGG
AGACCCTTGGAATTGTTTTGCACAGGTGTGTCTGGTGAGGAGTTGTTCAGTGTGTGTCTC
TTCCTTCCTTCTCTCCTCCTTCCCTTCTTGTAGTGCCTTATATGATAATGTAGTGGTTAA
TAGAGTTTACAGTGAGCTTGCCTTAGGATGGACCAGCAAGCCCCCGTGGACCCTGAGCTG
TTCACTGGGATTTATCAGAACAGGATTGATTAGTAGCTGTGTTGTGTATATGCATTGTTC
TCAGTTTCCCTGCCGACAGTGAAAAATAAAAACAGCAGCTTCTCTTTTTTACTGTCACCT
CTACCCCTTTCCATGTTGGAGTCTCAGCTGAGTTCTCACAGAAGCATTTTCCCCACGTGG
CTCTCTCACTGTGCGTTGCTACCTTGCTTCTGTGAGAATTTGGGAAGCAGGTGAGAGGAG
TCAAGCCAATATTAAATATGCATTTTTTTAAGTATGTGCAATCACTTTTAGATGAGATTT
ATTTTTTCCTTTATTCCATGTGGCAGTCCTTCCTGCAAATAGTTGACATTCCTAGTAAAA
TATTTGCTTGTTGACAAAACATGTAACAGATGTGTTTATACCAAAGAGCCTGTTGTATTG
CTTACCACGTCCCCATGCTATGAGGAAGAGTTTTGTGATGCCGCTGGTGACAGGGAACTC
ACAGAAAGGTTTCTTAGCCGGTGAAGAATATCGAGAAGGAACCAAAGCCTGTTGAGTCAT
TGGGCTCTTGAGGTTTCTTTGTAACAACTGTGGATTCTTGGGGCCCTTCAAATTGTGAAA
TTGTCCTTGTACTCTCAGCTCCTGCTCGGATCTGGGTCAGGTAGAGGGCACTAGGGATGG
CGAAGTTCCTGCCCGTGAAAGATTTAGGGGAAGAAGGTTAACCCTGAGATCTAAACGTGT
TCCATCTGAACTGAAAGTTATATATTTGAGGGATAAGTCTAGGACTGGTTCTTTGTAAAG
ATGGTGTCAAGGAGGTGCAGGATGGAGATGGGAGATTTCATGGAGCCTGGTCAGCAAGCT
CTGTACCAGGTTGAACACCGAGGAGCTGTCAAGGTATTTGGAATATCTTCATTGTAAGTA
GGAAGGGCTTTCAAGAGGGGACAGATAGTCAGTACAGCCGACCAGGAACATGTCGGCGTT
TTCTATATATATTTTTTATCATTATATTGAGTTGTGTTTTCAGCATTATTGGTCAAGATA
CCCAAGCAGTTTGTATAGTTTCTGTCACTAGTATTACATAGTTTTCTGGTCAGCGTGTGT
GATCTTTGTGTCTCTTTTTGCCAAGCACATTCTCATTTTCTTGCTCAAAGACAGATCTAG
TTTCTGATGGAAACATTTTTTGTTCCTTATCTTTCTTCTACAAGGGATAAGATTTGTTGT
TTTTGTAAGAAATGAGATGCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTTCCTGCTAACCCAAAATGTTATTTGTAATCAAATGTGTAGTGATTACACTTGAA
TTGTGTATTTAGTGTGTATCTGATCCTCCAGTGTTACCCCCGGAGATGGGATTGATGTCT
CCATTGTATTTAAACCAAAATGAACTGATACTTGTTGGAATGTATGTGAACTAATTGCAA
CTATATTAGAGCATATTACTGTAGTGCTGAGTGAGCAGGGGCATTGCCTGCAAGGAGAGG
AGACCCTTGGAATTGTTTTGCACAGGTGTGTCTGGTGAGGAGTTGTTCAGTGTGTGTCTC
TTCCTTCCTTCTCTCCTCCTTCCCTTCTTGTAGTGCCTTATATGATAATGTAGTGGTTAA
TAGAGTTTACAGTGAGCTTGCCTTAGGATGGACCAGCAAGCCCCCGTGGACCCTGAGCTG
TTCACTGGGATTTATCAGAACAGGATTGATTAGTAGCTGTGTTGTGTATATGCATTGTTC
TCAGTTTCCCTGCCGACAGTGAAAAATAAAAACAGCAGCTTCTCTTTTTTACTGTCACCT
CTACCCCTTTCCATGTTGGAGTCTCAGCTGAGTTCTCACAGAAGCATTTTCCCCACGTGG
CTCTCTCACTGTGCGTTGCTACCTTGCTTCTGTGAGAATTTGGGAAGCAGGTGAGAGGAG
TCAAGCCAATATTAAATATGCATTTTTTTAAGTATGTGCAATCACTTTTAGATGAGATTT
ATTTTTTCCTTTATTCCATGTGGCAGTCCTTCCTGCAAATAGTTGACATTCCTAGTAAAA
TATTTGCTTGTTGACAAAACATGTAACAGATGTGTTTATACCAAAGAGCCTGTTGTATTG
CTTACCACGTCCCCATGCTATGAGGAAGAGTTTTGTGATGCCGCTGGTGACAGGGAACTC
ACAGAAAGGTTTCTTAGCCGGTGAAGAATATCGAGAAGGAACCAAAGCCTGTTGAGTCAT
TGGGCTCTTGAGGTTTCTTTGTAACAACTGTGGATTCTTGGGGCCCTTCAAATTGTGAAA
TTGTCCTTGTACTCTCAGCTCCTGCTCGGATCTGGGTCAGGTAGAGGGCACTAGGGATGG
CGAAGTTCCTGCCCGTGAAAGATTTAGGGGAAGAAGGTTAACCCTGAGATCTAAACGTGT
TCCATCTGAACTGAAAGTTATATATTTGAGGGATAAGTCTAGGACTGGTTCTTTGTAAAG
ATGGTGTCAAGGAGGTGCAGGATGGAGATGGGAGATTTCATGGAGCCTGGTCAGCAAGCT
CTGTACCAGGTTGAACACCGAGGAGCTGTCAAGGTATTTGGAATATCTTCATTGTAAGTA
GGAAGGGCTTTCAAGAGGGGACAGATAGTCAGTACAGCCGACCAGGAACATGTCGGCGTT
TTCTATATATATTTTTTATCATTATATTGAGTTGTGTTTTCAGCATTATTGGTCAAGATA
CCCAAGCAGTTTGTATAGTTTCTGTCACTAGTATTACATAGTTTTCTGGTCAGCGTGTGT
GATCTTTGTGTCTCTTTTTGCCAAGCACATTCTCATTTTCTTGCTCAAAGACAGATCTAG
TTTCTGATGGAAACATTTTTTGTTCCTTATCTTTCTTCTACAAGGGATAAGATTTGTTGT
TTTTGTAAGAAATGAGATGCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|58567434|gb|AAW78948.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|58567434|gb|AAW78948.1|

Predicted RNA structure(s): 5 entry(ies)

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Predicted RNA structure(s): 5 entry(ies)

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               40-159, - strand, RNAz p=0.60249
               

               
               319-476, - strand, RNAz p=0.658928
               

               
               516-704, - strand, RNAz p=0.982028
               

               
               873-990, - strand, RNAz p=0.855452
               

               
               1515-1632, + strand, RNAz p=0.977586

Predicted RNA structure(s): 5 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.60249
               

               
               319-476, - strand, RNAz p=0.658928
               

               
               516-704, - strand, RNAz p=0.982028
               

               
               873-990, - strand, RNAz p=0.855452
               

               
               1515-1632, + strand, RNAz p=0.977586

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_181358, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_181358, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1632, gnl|bosTau2|chr3 (27186766-27185138)
               

               
               1-1632, gnl|Hg17|chr1 (114229470-114231104)
               

               
               1-1632, gnl|Mm7|chr3 (103536738-103535103)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1632, gnl|bosTau2|chr3 (27186766-27185138)
               

               
               1-1632, gnl|Hg17|chr1 (114229470-114231104)
               

               
               1-1632, gnl|Mm7|chr3 (103536738-103535103)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cbl (1.03318)
               

               
               ste (0.270416)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (1.03318)
               

               
               ste (0.270416)
               

               
               nms (0.213858)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               lun (0.150489)
               

               
               nca (0.136874)
               

               
               ret (0.128733)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)

	40-159, - strand, RNAz p=0.60249
	319-476, - strand, RNAz p=0.658928
	516-704, - strand, RNAz p=0.982028
	873-990, - strand, RNAz p=0.855452
	1515-1632, + strand, RNAz p=0.977586

	1-1632, gnl\|bosTau2\|chr3 (27186766-27185138)
	1-1632, gnl\|Hg17\|chr1 (114229470-114231104)
	1-1632, gnl\|Mm7\|chr3 (103536738-103535103)

	cbl (1.03318)
	ste (0.270416)
	nms (0.213858)
	cty (0.20816)
	tes (0.207814)
	cmu (0.186393)
	cut (0.169924)
	nje (0.16592)
	lun (0.150489)
	nca (0.136874)
	ret (0.128733)
	eru (0.120048)
	clu (0.119646)
	pgl (0.118483)
	spc (0.113366)